ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbart23f04
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1GSTX1_TOBAC (Q03662) Probable glutathione S-transferase (EC 2.5.... 37 0.024
2GSTX6_SOYBN (P32110) Probable glutathione S-transferase (EC 2.5.... 37 0.031
3GLSA_STRCO (P57755) Glutaminase (EC 3.5.1.2) 33 0.34
4GSTX3_TOBAC (Q03664) Probable glutathione S-transferase (EC 2.5.... 33 0.45
5GSTXA_ARATH (P46421) Glutathione S-transferase 103-1A (EC 2.5.1.18) 32 0.77
6DUT_MYCTU (P0A552) Deoxyuridine 5'-triphosphate nucleotidohydrol... 32 1.3
7DUT_MYCBO (P0A553) Deoxyuridine 5'-triphosphate nucleotidohydrol... 32 1.3
8HEY1_HUMAN (Q9Y5J3) Hairy/enhancer-of-split related with YRPW mo... 31 2.2
9VGLG_HHV2H (P13290) Glycoprotein G 30 2.9
10MYF5_XENLA (P24700) Myogenic factor 5 (Myf-5) 30 2.9
11PGBM_HUMAN (P98160) Basement membrane-specific heparan sulfate p... 29 6.5
12DUT_MYCPA (P61910) Deoxyuridine 5'-triphosphate nucleotidohydrol... 29 6.5
13ICP4_HHV11 (P08392) Trans-acting transcriptional protein ICP4 (T... 29 6.5
14GR65_HUMAN (Q9BQQ3) Golgi reassembly-stacking protein 1 (Golgi r... 29 6.5
15YGR5_YEAST (P53106) Hypothetical 21.9 kDa protein in ACE1-RAD54 ... 29 8.5
16TRI37_MOUSE (Q6PCX9) Tripartite motif protein 37 29 8.5
17PDLI2_MACFA (Q9GKU1) PDZ and LIM domain protein 2 29 8.5
18ELA1_BOVIN (Q28153) Elastase-1 precursor (EC 3.4.21.36) (Elastas... 29 8.5

>GSTX1_TOBAC (Q03662) Probable glutathione S-transferase (EC 2.5.1.18)|
           (Auxin-induced protein PGNT1/PCNT110)
          Length = 223

 Score = 37.4 bits (85), Expect = 0.024
 Identities = 16/37 (43%), Positives = 22/37 (59%)
 Frame = -1

Query: 509 VFEEMAGVQLLTEEAHPALCRWAREYRADETVRQCLP 399
           VFEE +GV L+T E  P  C+W  EY     +++ LP
Sbjct: 163 VFEEASGVVLVTSEKFPNFCKWRGEYINCSQIKESLP 199



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>GSTX6_SOYBN (P32110) Probable glutathione S-transferase (EC 2.5.1.18) (Heat|
           shock protein 26A) (G2-4)
          Length = 225

 Score = 37.0 bits (84), Expect = 0.031
 Identities = 15/37 (40%), Positives = 24/37 (64%)
 Frame = -1

Query: 509 VFEEMAGVQLLTEEAHPALCRWAREYRADETVRQCLP 399
           +F+E+AG+QL T E  P L +W++E+     V + LP
Sbjct: 169 IFQEIAGLQLFTSEKFPILYKWSQEFLNHPFVHEVLP 205



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>GLSA_STRCO (P57755) Glutaminase (EC 3.5.1.2)|
          Length = 307

 Score = 33.5 bits (75), Expect = 0.34
 Identities = 29/108 (26%), Positives = 49/108 (45%), Gaps = 3/108 (2%)
 Frame = +1

Query: 148 HFNENSKL*HRLLSF*SIDDPLPICIDMYT*P*FRQP*RVRHGDKHIYPLTHHEMSYFCA 327
           H + N+ L H + S+ +ID+P+P+ +D Y    FRQ                  ++  CA
Sbjct: 164 HGDRNAALAHFMASYGNIDNPVPVLLDQY----FRQ----------------CSVAASCA 203

Query: 328 AMALAMET*RSFLA---AKAASTRALSGRHCRTVSSALYSLAQRQSAG 462
            +ALA      FLA    +A  TR LS    + +++ + +     +AG
Sbjct: 204 DLALA----TGFLARHGIRADGTRLLSRSRAKQINAVMLTCGTYDAAG 247



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>GSTX3_TOBAC (Q03664) Probable glutathione S-transferase (EC 2.5.1.18)|
           (Auxin-induced protein PCNT103)
          Length = 223

 Score = 33.1 bits (74), Expect = 0.45
 Identities = 17/37 (45%), Positives = 20/37 (54%)
 Frame = -1

Query: 509 VFEEMAGVQLLTEEAHPALCRWAREYRADETVRQCLP 399
           VFEE  GV L+T E  P   RW  EY     V++ LP
Sbjct: 163 VFEEGYGVVLVTSEKFPNFSRWRDEYINCSQVKESLP 199



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>GSTXA_ARATH (P46421) Glutathione S-transferase 103-1A (EC 2.5.1.18)|
          Length = 224

 Score = 32.3 bits (72), Expect = 0.77
 Identities = 13/34 (38%), Positives = 19/34 (55%)
 Frame = -1

Query: 500 EMAGVQLLTEEAHPALCRWAREYRADETVRQCLP 399
           E  G++++TEE  P   RW R     E V+ C+P
Sbjct: 172 EGIGLEVITEEKFPEFKRWVRNLEKVEIVKDCVP 205



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>DUT_MYCTU (P0A552) Deoxyuridine 5'-triphosphate nucleotidohydrolase (EC|
           3.6.1.23) (dUTPase) (dUTP pyrophosphatase)
          Length = 154

 Score = 31.6 bits (70), Expect = 1.3
 Identities = 18/41 (43%), Positives = 23/41 (56%)
 Frame = +3

Query: 348 DIEVLPGRQGSQHAGPVREALPHGLVGPVLPRPAAERRVRL 470
           D+E+ PGR+     G V  A+P G+VG V PR     RV L
Sbjct: 34  DVELAPGRRALVRTG-VAVAVPFGMVGLVHPRSGLATRVGL 73



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>DUT_MYCBO (P0A553) Deoxyuridine 5'-triphosphate nucleotidohydrolase (EC|
           3.6.1.23) (dUTPase) (dUTP pyrophosphatase)
          Length = 154

 Score = 31.6 bits (70), Expect = 1.3
 Identities = 18/41 (43%), Positives = 23/41 (56%)
 Frame = +3

Query: 348 DIEVLPGRQGSQHAGPVREALPHGLVGPVLPRPAAERRVRL 470
           D+E+ PGR+     G V  A+P G+VG V PR     RV L
Sbjct: 34  DVELAPGRRALVRTG-VAVAVPFGMVGLVHPRSGLATRVGL 73



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>HEY1_HUMAN (Q9Y5J3) Hairy/enhancer-of-split related with YRPW motif 1 (Hairy|
           and enhancer of split related 1) (HESR-1)
           (Cardiovascular helix-loop-helix factor 2) (HES-related
           repressor protein 2) (HERP2)
          Length = 304

 Score = 30.8 bits (68), Expect = 2.2
 Identities = 21/49 (42%), Positives = 23/49 (46%), Gaps = 7/49 (14%)
 Frame = +3

Query: 315 LLLCSHGLGNGDIEVLP------GRQGSQHA-GPVREALPHGLVGPVLP 440
           LLL  +G GN      P      GR GS H   P   A P G +GPVLP
Sbjct: 194 LLLPQNGHGNAGTTASPTEPHHQGRLGSAHPEAPALRAPPSGSLGPVLP 242



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>VGLG_HHV2H (P13290) Glycoprotein G|
          Length = 699

 Score = 30.4 bits (67), Expect = 2.9
 Identities = 15/49 (30%), Positives = 24/49 (48%), Gaps = 3/49 (6%)
 Frame = +3

Query: 363 PGRQGSQHAGPVREALPHGLVGPV---LPRPAAERRVRLLGEQLHPGHL 500
           P +      GP+R  LP G++GP+    PRP A+   + +     P H+
Sbjct: 589 PNKPPPARPGPIRPTLPPGILGPLAPNTPRPPAQAPAKDMPSGPTPQHI 637



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>MYF5_XENLA (P24700) Myogenic factor 5 (Myf-5)|
          Length = 255

 Score = 30.4 bits (67), Expect = 2.9
 Identities = 18/43 (41%), Positives = 24/43 (55%)
 Frame = +2

Query: 161 IQSCNTDFFLFSPSMIHFPYASTCIHSPDFGSLDEYATATSIY 289
           + SC+     FSPS   F Y S+CI SP+ G  ++Y    SIY
Sbjct: 4   VDSCH-----FSPS--EFFYDSSCIPSPEEGYTEDYEHGMSIY 39



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>PGBM_HUMAN (P98160) Basement membrane-specific heparan sulfate proteoglycan core|
            protein precursor (HSPG) (Perlecan) (PLC)
          Length = 4391

 Score = 29.3 bits (64), Expect = 6.5
 Identities = 13/26 (50%), Positives = 13/26 (50%)
 Frame = -3

Query: 396  QGPRAGCLGGQEGPLCLHCQGHGCTE 319
            QG R  CL G  GP C    GHG  E
Sbjct: 4160 QGTRCLCLPGFSGPRCQQGSGHGIAE 4185



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>DUT_MYCPA (P61910) Deoxyuridine 5'-triphosphate nucleotidohydrolase (EC|
           3.6.1.23) (dUTPase) (dUTP pyrophosphatase)
          Length = 154

 Score = 29.3 bits (64), Expect = 6.5
 Identities = 17/41 (41%), Positives = 22/41 (53%)
 Frame = +3

Query: 348 DIEVLPGRQGSQHAGPVREALPHGLVGPVLPRPAAERRVRL 470
           D+ + PGR+     G V  A+P G+VG V PR     RV L
Sbjct: 34  DVRLEPGRRALVRTG-VAVAIPFGMVGLVHPRSGLAARVGL 73



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>ICP4_HHV11 (P08392) Trans-acting transcriptional protein ICP4 (Transcriptional|
           activator IE175) (Alpha-4 protein)
          Length = 1298

 Score = 29.3 bits (64), Expect = 6.5
 Identities = 14/35 (40%), Positives = 19/35 (54%)
 Frame = +3

Query: 342 NGDIEVLPGRQGSQHAGPVREALPHGLVGPVLPRP 446
           +GD+  +PG  G++ A P R   P G  GP  P P
Sbjct: 584 DGDLAAVPGLAGARPASPPR---PEGPAGPASPPP 615



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>GR65_HUMAN (Q9BQQ3) Golgi reassembly-stacking protein 1 (Golgi|
           reassembly-stacking protein of 65 kDa) (GRASP65) (Golgi
           peripheral membrane protein p65) (Golgi phosphoprotein
           5) (GOLPH5)
          Length = 439

 Score = 29.3 bits (64), Expect = 6.5
 Identities = 13/40 (32%), Positives = 20/40 (50%)
 Frame = +3

Query: 339 GNGDIEVLPGRQGSQHAGPVREALPHGLVGPVLPRPAAER 458
           G+   + LPG     H+ P  + LPH +  P+ P P  +R
Sbjct: 261 GSSMEDPLPGPGSPSHSAPDPDGLPHFMETPLQPPPPVQR 300



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>YGR5_YEAST (P53106) Hypothetical 21.9 kDa protein in ACE1-RAD54 intergenic|
           region
          Length = 192

 Score = 28.9 bits (63), Expect = 8.5
 Identities = 13/23 (56%), Positives = 16/23 (69%)
 Frame = -2

Query: 376 PWRPGRTSMSPLPRPWLHRSSSF 308
           P+RP RTS S +PRP    +SSF
Sbjct: 152 PFRPKRTSRSAIPRPLTCAASSF 174



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>TRI37_MOUSE (Q6PCX9) Tripartite motif protein 37|
          Length = 961

 Score = 28.9 bits (63), Expect = 8.5
 Identities = 15/39 (38%), Positives = 23/39 (58%), Gaps = 6/39 (15%)
 Frame = +3

Query: 345 GDIEVLP------GRQGSQHAGPVREALPHGLVGPVLPR 443
           GD +VL        + GS+H+ P   AL HG++G +LP+
Sbjct: 787 GDCQVLAEGSSGSSQSGSRHSSP--RALTHGIIGDLLPK 823



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>PDLI2_MACFA (Q9GKU1) PDZ and LIM domain protein 2|
          Length = 352

 Score = 28.9 bits (63), Expect = 8.5
 Identities = 20/47 (42%), Positives = 21/47 (44%)
 Frame = +3

Query: 318 LLCSHGLGNGDIEVLPGRQGSQHAGPVREALPHGLVGPVLPRPAAER 458
           L CS GL   D     GR GSQ AG  R      LV P  P P + R
Sbjct: 158 LACSPGLPAADRLSYSGRPGSQQAGLGRAGDSAVLVLPPSPGPRSSR 204



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>ELA1_BOVIN (Q28153) Elastase-1 precursor (EC 3.4.21.36) (Elastase I)|
          Length = 266

 Score = 28.9 bits (63), Expect = 8.5
 Identities = 22/65 (33%), Positives = 27/65 (41%)
 Frame = -3

Query: 399 GQGPRAGCLGGQEGPLCLHCQGHGCTEVAHFMMSKGIYMLVAVAYSSRLPKSGLCIHVDA 220
           G G RAGC G   GP  LHC  +G   V       G+   V+    +   K  +   V A
Sbjct: 203 GDGVRAGCQGDSGGP--LHCLVNGQYAV------HGVTSFVSSLGCNVSKKPTVFTRVSA 254

Query: 219 YGKWI 205
           Y  WI
Sbjct: 255 YISWI 259


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 72,838,487
Number of Sequences: 219361
Number of extensions: 1539112
Number of successful extensions: 5259
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 4951
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5256
length of database: 80,573,946
effective HSP length: 104
effective length of database: 57,760,402
effective search space used: 3754426130
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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