>BXDC2_XENLA (Q8UVY2) Brix domain-containing protein 2 (Ribosome biogenesis|
           protein Brix) (Bx24)
          Length = 339

 Score = 70.9 bits (172), Expect = 2e-12
 Identities = 37/67 (55%), Positives = 41/67 (61%)
 Frame = -1

Query: 516 IWFRNYQISVPHNEIDKVDKGGLDKMTLVEVGPRFCLNPIKIFGGSFGGPTLFENPFYVS 337
           IWFRNYQI               +   LVE+GPRF LN IKIF GSFGGPTL+ENP Y S
Sbjct: 208 IWFRNYQIIE-------------EDAALVEIGPRFVLNLIKIFKGSFGGPTLYENPHYQS 254

Query: 336 PNQIRAL 316
           PN  R +
Sbjct: 255 PNMHRRM 261

>BXDC2_MOUSE (Q9DCA5) Brix domain-containing protein 2 (Ribosome biogenesis|
           protein Brix)
          Length = 276

 Score = 68.9 bits (167), Expect = 8e-12
 Identities = 36/65 (55%), Positives = 40/65 (61%)
 Frame = -1

Query: 516 IWFRNYQISVPHNEIDKVDKGGLDKMTLVEVGPRFCLNPIKIFGGSFGGPTLFENPFYVS 337
           IWFRN+QI               +   LVE+GPRF LN IKIF GSFGGPTL+ENP Y S
Sbjct: 138 IWFRNFQIIE-------------EDAALVEIGPRFVLNLIKIFQGSFGGPTLYENPHYQS 184

Query: 336 PNQIR 322
           PN  R
Sbjct: 185 PNMHR 189

>BXDC2_HUMAN (Q8TDN6) Brix domain-containing protein 2 (Ribosome biogenesis|
           protein Brix)
          Length = 353

 Score = 68.9 bits (167), Expect = 8e-12
 Identities = 36/65 (55%), Positives = 40/65 (61%)
 Frame = -1

Query: 516 IWFRNYQISVPHNEIDKVDKGGLDKMTLVEVGPRFCLNPIKIFGGSFGGPTLFENPFYVS 337
           IWFRN+QI               +   LVE+GPRF LN IKIF GSFGGPTL+ENP Y S
Sbjct: 215 IWFRNFQIIE-------------EDAALVEIGPRFVLNLIKIFQGSFGGPTLYENPHYQS 261

Query: 336 PNQIR 322
           PN  R
Sbjct: 262 PNMHR 266

>BRX1_YEAST (Q08235) Ribosome biogenesis protein BRX1|
          Length = 291

 Score = 65.1 bits (157), Expect = 1e-10
 Identities = 38/103 (36%), Positives = 54/103 (52%), Gaps = 1/103 (0%)
 Frame = -1

Query: 516 IWFRNYQISVPHNEIDKVD-KGGLDKMTLVEVGPRFCLNPIKIFGGSFGGPTLFENPFYV 340
           IW R Y+IS  H+  +K + + G + ++LVE+GPRF +  I I  GSFGGP ++EN  YV
Sbjct: 186 IWVRTYEIS--HSTKNKEEYEDGEEDISLVEIGPRFVMTVILILEGSFGGPKIYENKQYV 243

Query: 339 SPNQIRALEXXXXXXXXXXXXXXXXXXKMHEMENTLEPDEFAD 211
           SPN +RA                    K+   EN L  D  ++
Sbjct: 244 SPNVVRAQIKQQAAEEAKSRAEAAVERKIKRRENVLAADPLSN 286

>BXDC2_DROME (Q9VZE6) Brix domain-containing protein 2 homolog (Ribosome|
           biogenesis protein Brix homolog)
          Length = 359

 Score = 62.8 bits (151), Expect = 5e-10
 Identities = 33/65 (50%), Positives = 42/65 (64%)
 Frame = -1

Query: 516 IWFRNYQISVPHNEIDKVDKGGLDKMTLVEVGPRFCLNPIKIFGGSFGGPTLFENPFYVS 337
           IWFRN+QI          + GGL      EVGPR+ +NP+KIF GSF G T++ENP YVS
Sbjct: 207 IWFRNFQILS--------EDGGLS-----EVGPRYVMNPVKIFDGSFTGKTIWENPDYVS 253

Query: 336 PNQIR 322
           P++ R
Sbjct: 254 PSKQR 258

>BRX1_SCHPO (Q9HGL6) Ribosome biogenesis protein Brix homolog|
          Length = 295

 Score = 60.1 bits (144), Expect = 4e-09
 Identities = 30/66 (45%), Positives = 41/66 (62%)
 Frame = -1

Query: 516 IWFRNYQISVPHNEIDKVDKGGLDKMTLVEVGPRFCLNPIKIFGGSFGGPTLFENPFYVS 337
           IWFRNY+I       +  DK   D +TL+E+GPRF +  I I  GSFGGP +++N  +VS
Sbjct: 198 IWFRNYEIR------ENEDKSK-DPVTLIEIGPRFVMTIINILEGSFGGPVIYKNDTFVS 250

Query: 336 PNQIRA 319
              +RA
Sbjct: 251 STMVRA 256

>YM63_CAEEL (P34524) Hypothetical protein K12H4.3 in chromosome III|
          Length = 352

 Score = 60.1 bits (144), Expect = 4e-09
 Identities = 32/65 (49%), Positives = 40/65 (61%)
 Frame = -1

Query: 516 IWFRNYQISVPHNEIDKVDKGGLDKMTLVEVGPRFCLNPIKIFGGSFGGPTLFENPFYVS 337
           IWFRN+QI         VD    + + L EVGPRF L  +++F GSF G  L++NP YVS
Sbjct: 219 IWFRNFQI---------VD----ESLQLQEVGPRFVLEMVRLFAGSFEGAVLYDNPNYVS 265

Query: 336 PNQIR 322
           PN IR
Sbjct: 266 PNVIR 270

>YDD3_SCHPO (O14206) Hypothetical protein C1B9.03c in chromosome I|
          Length = 389

 Score = 31.2 bits (69), Expect = 1.8
 Identities = 14/38 (36%), Positives = 22/38 (57%)
 Frame = -1

Query: 435 LVEVGPRFCLNPIKIFGGSFGGPTLFENPFYVSPNQIR 322
           L+E+GPR  L  IKI   + GG  L+ +  + S  +I+
Sbjct: 289 LIEIGPRMTLELIKITEDAMGGKVLYHSHVHKSKEEIK 326

>RHSC_ECOLI (P16918) Protein rhsC precursor|
          Length = 1397

 Score = 28.9 bits (63), Expect = 8.7
 Identities = 16/50 (32%), Positives = 24/50 (48%), Gaps = 2/50 (4%)
 Frame = -1

Query: 486  PHNEIDKVDKGGLDKMTLVEVGPRFCLNPIKIFGGSF--GGPTLFENPFY 343
            P N I  +D  GL+ +         C+ P+   GG+    GP ++ NPFY
Sbjct: 1235 PLNPISNIDPLGLETLK--------CIKPLHSMGGTGERSGPDIWGNPFY 1276


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 67,617,249
Number of Sequences: 219361
Number of extensions: 1199961
Number of successful extensions: 3127
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 3015
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3120
length of database: 80,573,946
effective HSP length: 104
effective length of database: 57,760,402
effective search space used: 3869946934
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)