ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbart23e11
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1CSK2A_MAIZE (P28523) Casein kinase II subunit alpha (EC 2.7.11.1... 38 0.005
2CSK22_ARATH (Q08466) Casein kinase II subunit alpha-2 (EC 2.7.11... 36 0.020
3CSK21_ARATH (Q08467) Casein kinase II subunit alpha-1 (EC 2.7.11... 33 0.17
4CSK23_ARATH (O64817) Probable casein kinase II subunit alpha (EC... 33 0.22
5BACB_BACLI (O68007) Bacitracin synthetase 2 (BA2) [Includes: ATP... 30 1.9
6PPID_CRYNE (Q5KFV5) Peptidyl-prolyl cis-trans isomerase D (EC 5.... 28 4.2
7PSBC_SYNP7 (P11004) Photosystem II 44 kDa reaction center protei... 28 5.5

>CSK2A_MAIZE (P28523) Casein kinase II subunit alpha (EC 2.7.11.1) (CK II)|
           (CK2-alpha)
          Length = 332

 Score = 38.1 bits (87), Expect = 0.005
 Identities = 17/19 (89%), Positives = 17/19 (89%)
 Frame = -1

Query: 361 MAHPYFLQVRAAENSRTRA 305
           M HPYF QVRAAENSRTRA
Sbjct: 314 MTHPYFQQVRAAENSRTRA 332



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>CSK22_ARATH (Q08466) Casein kinase II subunit alpha-2 (EC 2.7.11.1) (CK II)|
          Length = 333

 Score = 36.2 bits (82), Expect = 0.020
 Identities = 16/20 (80%), Positives = 17/20 (85%)
 Frame = -1

Query: 361 MAHPYFLQVRAAENSRTRAQ 302
           MAHPYF QVRAAE+SR R Q
Sbjct: 314 MAHPYFAQVRAAESSRMRTQ 333



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>CSK21_ARATH (Q08467) Casein kinase II subunit alpha-1 (EC 2.7.11.1) (CK II)|
          Length = 333

 Score = 33.1 bits (74), Expect = 0.17
 Identities = 15/20 (75%), Positives = 16/20 (80%)
 Frame = -1

Query: 361 MAHPYFLQVRAAENSRTRAQ 302
           MAH YF QVRAAE SR R+Q
Sbjct: 314 MAHAYFAQVRAAETSRMRSQ 333



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>CSK23_ARATH (O64817) Probable casein kinase II subunit alpha (EC 2.7.11.1) (CK|
           II)
          Length = 333

 Score = 32.7 bits (73), Expect = 0.22
 Identities = 14/20 (70%), Positives = 16/20 (80%)
 Frame = -1

Query: 361 MAHPYFLQVRAAENSRTRAQ 302
           M HPYF QV+AAE+SR R Q
Sbjct: 314 MDHPYFAQVKAAESSRLRTQ 333



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>BACB_BACLI (O68007) Bacitracin synthetase 2 (BA2) [Includes: ATP-dependent|
            lysine adenylase (LysA) (Lysine activase); ATP-dependent
            D-ornithine adenylase (D-OrnA) (D-ornithine activase);
            Ornithine racemase (EC 5.1.1.12)]
          Length = 2607

 Score = 29.6 bits (65), Expect = 1.9
 Identities = 11/37 (29%), Positives = 22/37 (59%)
 Frame = +2

Query: 95   SINQVSIHKQQEQITVLFPLDDRGTHHTGSYLSQLIQ 205
            ++N +S+  ++E+ TVL+  +D  T H     S+L +
Sbjct: 1521 TLNDISMLSEEERHTVLYQFNDTNTEHPSGIFSELFE 1557



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>PPID_CRYNE (Q5KFV5) Peptidyl-prolyl cis-trans isomerase D (EC 5.2.1.8) (PPIase|
           D) (Rotamase D)
          Length = 375

 Score = 28.5 bits (62), Expect = 4.2
 Identities = 18/64 (28%), Positives = 30/64 (46%), Gaps = 6/64 (9%)
 Frame = +3

Query: 24  KDILYKQSRTILPNTLHEKWVANFQSIRFPYTNNKSKSQFFSP------STIEAHTTQAL 185
           K + Y     +LPN    + V +F+S+R P   N +      P      S + + T++AL
Sbjct: 242 KALRYLDVHPVLPNDSPAELVESFRSLRLPLLTNAALCALKLPASPNTSSLVVSLTSRAL 301

Query: 186 TFPS 197
           T P+
Sbjct: 302 TLPN 305



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>PSBC_SYNP7 (P11004) Photosystem II 44 kDa reaction center protein (P6 protein)|
           (CP43)
          Length = 461

 Score = 28.1 bits (61), Expect = 5.5
 Identities = 12/26 (46%), Positives = 15/26 (57%)
 Frame = +3

Query: 114 YTNNKSKSQFFSPSTIEAHTTQALTF 191
           Y N    S+FF P+  EA  +QA TF
Sbjct: 280 YNNTVYPSEFFGPTAAEASQSQAFTF 305


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 48,718,086
Number of Sequences: 219361
Number of extensions: 849825
Number of successful extensions: 2452
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 2409
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2452
length of database: 80,573,946
effective HSP length: 95
effective length of database: 59,734,651
effective search space used: 1433631624
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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