Clone Information

BLAST Search Result

Clone Name	rbart23e03
Clone Library Name	barley_pub

No.	Definition	Score (bits)	E Value
1	SYP51_ARATH (Q9SA23) Syntaxin-51 (AtSYP51)	149	5e-36
2	SYP52_ARATH (Q94KK7) Syntaxin-52 (AtSYP52)	140	2e-33
3	SYP61_ARATH (Q946Y7) Syntaxin-61 (AtSYP61) (Osmotic stress-sensi...	54	3e-07
4	VAM7_YEAST (P32912) Vacuolar morphogenesis protein VAM7	47	3e-05
5	TLG1_SCHPO (Q9HGN3) t-SNARE affecting a late Golgi compartment p...	47	4e-05
6	STX8_RAT (Q9Z2Q7) Syntaxin-8	45	1e-04
7	STX8_MOUSE (O88983) Syntaxin-8 (Syntaxin-like protein 3I35)	45	1e-04
8	STX8_HUMAN (Q9UNK0) Syntaxin-8	45	2e-04
9	STX5_CAEEL (P83528) Putative syntaxin C15C7.1	44	3e-04
10	STX6_CHICK (Q5ZL19) Syntaxin-6	42	0.001
11	FSV1_SCHPO (O14222) Syntaxin-like protein fsv1	42	0.001
12	STX10_HUMAN (O60499) Syntaxin-10 (Syn10)	41	0.002
13	SYP72_ARATH (Q94KK6) Syntaxin-72 (AtSYP72)	41	0.002
14	TLG1_YEAST (Q03322) T-SNARE affecting a late Golgi compartment p...	40	0.004
15	STX6_RAT (Q63635) Syntaxin-6	40	0.004
16	STX6_MOUSE (Q9JKK1) Syntaxin-6	40	0.004
17	SYP71_ARATH (Q9SF29) Syntaxin-71 (AtSYP71)	38	0.019
18	ATX2L_MOUSE (Q7TQH0) Ataxin-2-like protein	37	0.043
19	SNP30_ARATH (Q9LMG8) Putative SNAP25 homologous protein SNAP30 (...	37	0.043
20	SYP22_ARATH (P93654) Syntaxin-22 (AtSYP22) (AtVAM3)	36	0.056
21	BET12_ARATH (Q94CG2) Bet1-like SNARE 1-2 (AtBET12) (Bet1/Sft1-li...	35	0.16
22	SEC9_CANGA (Q6FY22) Protein transport protein SEC9	34	0.21
23	MUKB_HAEDU (Q7VL96) Chromosome partition protein mukB (Structura...	34	0.28
24	BET11_ARATH (Q9M2J9) Bet1-like SNARE 1-1 (AtBET11) (Bet1/Sft1-li...	34	0.28
25	SNP33_ARATH (Q9S7P9) SNAP25 homologous protein SNAP33 (AtSNAP33)...	33	0.62
26	NOP14_YEAST (Q99207) Nucleolar complex protein 14 (U3 small nucl...	33	0.62
27	Y1680_MANSM (Q65RX3) UPF0054 protein MS1680	32	0.81
28	ARFH_ARATH (Q9FGV1) Auxin response factor 8	32	1.1
29	FLIF_TREPA (O83414) Flagellar M-ring protein	32	1.4
30	BRO1_NEUCR (Q7SAN9) Vacuolar protein-sorting protein bro-1 (BRO ...	32	1.4
31	RB6I2_HUMAN (Q8IUD2) RAB6-interacting protein 2 (ERC protein 1)	30	4.0
32	ARFC_ARATH (O23661) Auxin response factor 3 (Protein ETTIN)	30	4.0
33	CING_HUMAN (Q9P2M7) Cingulin	30	4.0
34	ISPH_PROAC (Q6AA89) 4-hydroxy-3-methylbut-2-enyl diphosphate red...	30	5.3
35	BRO1_GIBZE (Q4IBS9) Vacuolar protein-sorting protein BRO1 (BRO d...	30	5.3
36	ARFG_ARATH (P93022) Auxin response factor 7 (Non-phototropic hyp...	30	5.3
37	FUT4_ARATH (Q9SJP2) Probable fucosyltransferase 4 (EC 2.4.1.-) (...	29	6.9
38	ATX2L_HUMAN (Q8WWM7) Ataxin-2-like protein (Ataxin-2 domain prot...	29	6.9
39	KIFC3_MOUSE (O35231) Kinesin-like protein KIFC3	29	6.9
40	RB6I2_MOUSE (Q99MI1) RAB6-interacting protein 2 (ERC protein 1) ...	29	9.0
41	TNR19_HUMAN (Q9NS68) Tumor necrosis factor receptor superfamily ...	29	9.0
42	ARFS_ARATH (Q8RYC8) Auxin response factor 19 (Auxin-responsive p...	29	9.0
43	NBP1_YEAST (P52919) NAP1-binding protein	29	9.0
44	RB6I2_RAT (Q811U3) RAB6-interacting protein 2 (ERC protein 1) (E...	29	9.0
45	KIFC3_HUMAN (Q9BVG8) Kinesin-like protein KIFC3	29	9.0
46	ARFD_ARATH (Q9ZTX9) Auxin response factor 4	29	9.0
47	PTH_BORPE (Q7VUH3) Peptidyl-tRNA hydrolase (EC 3.1.1.29) (PTH)	29	9.0
48	I27RA_MOUSE (O70394) Interleukin-27 receptor alpha chain precurs...	29	9.0

>SYP51_ARATH (Q9SA23) Syntaxin-51 (AtSYP51)|
          Length = 232

 Score =  149 bits (376), Expect = 5e-36
 Identities = 75/106 (70%), Positives = 87/106 (82%)
 Frame = -1

Query: 524 LLGQSKKAADDMSRVAGLDNQGIVGLQRQIMKEQDEGLEKLEQTVLSAKHVALAVNEEPD 345
           LLG   K  D MSRV G+DNQGIVG QRQ+M+EQDEGLE+LE TV+S KH+ALAV+EE D
Sbjct: 109 LLGPDIKPDDSMSRVTGMDNQGIVGYQRQVMREQDEGLEQLEGTVMSTKHIALAVSEELD 168

Query: 344 LHARLIDDLDDHVDGTNSRLQRVQKRLAVLNKRAKGGCSCMSLLLS 207
           L  RLIDDLD HVD T+SRL+RVQK LAV+NK  + GCSCMS+LLS
Sbjct: 169 LQTRLIDDLDYHVDVTDSRLRRVQKSLAVMNKNMRSGCSCMSMLLS 214

to top

>SYP52_ARATH (Q94KK7) Syntaxin-52 (AtSYP52)|
          Length = 233

 Score =  140 bits (354), Expect = 2e-33
 Identities = 74/124 (59%), Positives = 89/124 (71%)
 Frame = -1

Query: 524 LLGQSKKAADDMSRVAGLDNQGIVGLQRQIMKEQDEGLEKLEQTVLSAKHVALAVNEEPD 345
           L G   K  D ++RV+G+DNQGIV  QRQ+M+EQDEGLEKLE+TV+S KH+ALAVNEE  
Sbjct: 110 LFGTDLKPDDAINRVSGMDNQGIVVFQRQVMREQDEGLEKLEETVMSTKHIALAVNEELT 169

Query: 344 LHARLIDDLDDHVDGTNSRLQRVQKRLAVLNKRAKGGCSCMSLLLSTXXXXXXXXXXXXX 165
           L  RLIDDLD  VD T+SRL+RVQK LA++NK  K GCSCMS+LLS              
Sbjct: 170 LQTRLIDDLDYDVDITDSRLRRVQKSLALMNKSMKSGCSCMSMLLSVLGIVGLALVIWLL 229

Query: 164 IKYL 153
           +KYL
Sbjct: 230 VKYL 233

to top

>SYP61_ARATH (Q946Y7) Syntaxin-61 (AtSYP61) (Osmotic stress-sensitive mutant 1)|
          Length = 245

 Score = 53.9 bits (128), Expect = 3e-07
 Identities = 34/103 (33%), Positives = 57/103 (55%), Gaps = 6/103 (5%)
 Frame = -1

Query: 500 ADDMSRVAGLDNQGIV----GLQRQIMKEQDEGLEKLEQTVLSAKHVALAVNEEPDLHAR 333
           A    +  G D+ G V      Q  ++K+QDE L++L ++V     V L +++E     R
Sbjct: 130 ASRYDQYGGRDDDGFVQSESDRQMLLIKQQDEELDELSKSVQRIGGVGLTIHDELVAQER 189

Query: 332 LIDDLDDHVDGTNSRLQRVQKRLAVLNKR--AKGGCSCMSLLL 210
           +ID+LD  +D T +RL+ VQK++ ++ K+  AKG    +  LL
Sbjct: 190 IIDELDTEMDSTKNRLEFVQKKVGMVMKKAGAKGQMMMICFLL 232

to top

>VAM7_YEAST (P32912) Vacuolar morphogenesis protein VAM7|
          Length = 316

 Score = 47.0 bits (110), Expect = 3e-05
 Identities = 28/94 (29%), Positives = 46/94 (48%)
 Frame = -1

Query: 524 LLGQSKKAADDMSRVAGLDNQGIVGLQRQIMKEQDEGLEKLEQTVLSAKHVALAVNEEPD 345
           LLG +       + V G  N  +   Q Q++++Q++ L  L + + + + +AL +NEE  
Sbjct: 223 LLGVATSDNSSTTEVQGRTNNDLQQGQMQMVRDQEQELVALHRIIQAQRGLALEMNEELQ 282

Query: 344 LHARLIDDLDDHVDGTNSRLQRVQKRLAVLNKRA 243
               L+  L+D VD T  RLQ   K+    N  A
Sbjct: 283 TQNELLTALEDDVDNTGRRLQIANKKARHFNNSA 316

to top

>TLG1_SCHPO (Q9HGN3) t-SNARE affecting a late Golgi compartment protein 1|
           (Syntaxin tlg1)
          Length = 225

 Score = 46.6 bits (109), Expect = 4e-05
 Identities = 27/82 (32%), Positives = 49/82 (59%), Gaps = 3/82 (3%)
 Frame = -1

Query: 446 QRQIMKEQDEGLEKLEQTVLSAKHVALAVNEEPDLHARLIDDLDDHVDGTNSRLQRVQKR 267
           Q Q+ ++QD  L+ +  T+ + +  A  + EE    A L+D LD+ ++ TNS+L+R  KR
Sbjct: 132 QEQLYQQQDVMLDGVYDTIGNIRGQAALMGEELGQQADLLDTLDNSIETTNSKLRRGMKR 191

Query: 266 L---AVLNKRAKGGCSCMSLLL 210
           L    + +  +K GC C+++L+
Sbjct: 192 LKDFTIASADSKSGC-CITVLI 212

to top

>STX8_RAT (Q9Z2Q7) Syntaxin-8|
          Length = 236

 Score = 45.1 bits (105), Expect = 1e-04
 Identities = 25/96 (26%), Positives = 50/96 (52%)
 Frame = -1

Query: 497 DDMSRVAGLDNQGIVGLQRQIMKEQDEGLEKLEQTVLSAKHVALAVNEEPDLHARLIDDL 318
           ++     GL    I   Q++I++EQD GL+ L   +   K +   +  E D    +IDDL
Sbjct: 127 EEPEETRGLGFDEIRQQQQKIIQEQDAGLDALSSIISRQKQMGQEIGNELDEQNEIIDDL 186

Query: 317 DDHVDGTNSRLQRVQKRLAVLNKRAKGGCSCMSLLL 210
            + V+ T+ +L+   +R+ ++++++      M +LL
Sbjct: 187 ANLVENTDEKLRTEARRVTLVDRKSASCGMIMVILL 222

to top

>STX8_MOUSE (O88983) Syntaxin-8 (Syntaxin-like protein 3I35)|
          Length = 236

 Score = 45.1 bits (105), Expect = 1e-04
 Identities = 25/96 (26%), Positives = 50/96 (52%)
 Frame = -1

Query: 497 DDMSRVAGLDNQGIVGLQRQIMKEQDEGLEKLEQTVLSAKHVALAVNEEPDLHARLIDDL 318
           ++     GL    I   Q++I++EQD GL+ L   +   K +   +  E D    +IDDL
Sbjct: 127 EEPEETRGLGFDEIRQQQQKIIQEQDAGLDALSSIISRQKQMGQEIGNELDEQNEIIDDL 186

Query: 317 DDHVDGTNSRLQRVQKRLAVLNKRAKGGCSCMSLLL 210
            + V+ T+ +L+   +R+ ++++++      M +LL
Sbjct: 187 ANLVENTDEKLRTEARRVTLVDRKSTSCGMIMVILL 222

to top

>STX8_HUMAN (Q9UNK0) Syntaxin-8|
          Length = 236

 Score = 44.7 bits (104), Expect = 2e-04
 Identities = 25/96 (26%), Positives = 50/96 (52%)
 Frame = -1

Query: 497 DDMSRVAGLDNQGIVGLQRQIMKEQDEGLEKLEQTVLSAKHVALAVNEEPDLHARLIDDL 318
           ++     GL    I   Q++I++EQD GL+ L   +   K +   +  E D    +IDDL
Sbjct: 127 EEPEETRGLGFDEIRQQQQKIIQEQDAGLDALSSIISRQKQMGQEIGNELDEQNEIIDDL 186

Query: 317 DDHVDGTNSRLQRVQKRLAVLNKRAKGGCSCMSLLL 210
            + V+ T+ +L+   +R+ ++++++      M +LL
Sbjct: 187 ANLVENTDEKLRNETRRVNMVDRKSASCGMIMVILL 222

to top

>STX5_CAEEL (P83528) Putative syntaxin C15C7.1|
          Length = 122

 Score = 43.9 bits (102), Expect = 3e-04
 Identities = 27/104 (25%), Positives = 55/104 (52%)
 Frame = -1

Query: 521 LGQSKKAADDMSRVAGLDNQGIVGLQRQIMKEQDEGLEKLEQTVLSAKHVALAVNEEPDL 342
           L + + + +DM   A   NQ I+  Q QI++EQD+ LE +  +V + + ++  + +E D 
Sbjct: 9   LNEEEISLEDMPSSA---NQ-ILTRQEQIIQEQDDELELVGNSVRTLRGMSSMIGDELDQ 64

Query: 341 HARLIDDLDDHVDGTNSRLQRVQKRLAVLNKRAKGGCSCMSLLL 210
            + ++DDL   ++ + +RL    K++A L         C  +++
Sbjct: 65  QSTMLDDLGQEMEYSETRLDTAMKKMAKLTHLEDESSQCKMIMV 108

to top

>STX6_CHICK (Q5ZL19) Syntaxin-6|
          Length = 254

 Score = 42.0 bits (97), Expect = 0.001
 Identities = 21/62 (33%), Positives = 38/62 (61%)
 Frame = -1

Query: 446 QRQIMKEQDEGLEKLEQTVLSAKHVALAVNEEPDLHARLIDDLDDHVDGTNSRLQRVQKR 267
           Q+ I+++QDE LE +  ++   K+++  +  E +  A ++DD    +D T+SRL  V K+
Sbjct: 161 QQLIVEQQDEQLELVSGSIGVLKNMSQRIGGELEEQAVMLDDFSHELDSTHSRLDNVMKK 220

Query: 266 LA 261
           LA
Sbjct: 221 LA 222

to top

>FSV1_SCHPO (O14222) Syntaxin-like protein fsv1|
          Length = 247

 Score = 41.6 bits (96), Expect = 0.001
 Identities = 22/80 (27%), Positives = 42/80 (52%)
 Frame = -1

Query: 449 LQRQIMKEQDEGLEKLEQTVLSAKHVALAVNEEPDLHARLIDDLDDHVDGTNSRLQRVQK 270
           + +Q++ EQ+E L  +E +V   K +  A+N E      L+D++++  D    R    + 
Sbjct: 157 MHQQMLNEQEESLGGIEASVQRQKRMGYAMNTELSEQNVLLDNMNNDADRIERRFDHAKN 216

Query: 269 RLAVLNKRAKGGCSCMSLLL 210
           RL  ++++AK    C  +LL
Sbjct: 217 RLNKVSRKAKQYPRCFIILL 236

to top

>STX10_HUMAN (O60499) Syntaxin-10 (Syn10)|
          Length = 249

 Score = 40.8 bits (94), Expect = 0.002
 Identities = 22/62 (35%), Positives = 35/62 (56%)
 Frame = -1

Query: 446 QRQIMKEQDEGLEKLEQTVLSAKHVALAVNEEPDLHARLIDDLDDHVDGTNSRLQRVQKR 267
           Q+ IM EQD+ LE +  ++   KH++  V EE D    ++D     +D T SR+  V ++
Sbjct: 156 QQLIMDEQDQQLEMVSGSIQVLKHMSGRVGEELDEQGIMLDAFAQEMDHTQSRMDGVLRK 215

Query: 266 LA 261
           LA
Sbjct: 216 LA 217

to top

>SYP72_ARATH (Q94KK6) Syntaxin-72 (AtSYP72)|
          Length = 267

 Score = 40.8 bits (94), Expect = 0.002
 Identities = 20/56 (35%), Positives = 35/56 (62%)
 Frame = -1

Query: 431 KEQDEGLEKLEQTVLSAKHVALAVNEEPDLHARLIDDLDDHVDGTNSRLQRVQKRL 264
           K+QDEGL+ + + + + K++A  +NEE D    L+++++  VDG  S L+    RL
Sbjct: 177 KKQDEGLDIISEGLDALKNLARDMNEELDKQVPLMEEMETKVDGATSDLKNTNVRL 232

to top

>TLG1_YEAST (Q03322) T-SNARE affecting a late Golgi compartment protein 1|
           (Syntaxin TLG1)
          Length = 224

 Score = 40.0 bits (92), Expect = 0.004
 Identities = 23/82 (28%), Positives = 48/82 (58%), Gaps = 3/82 (3%)
 Frame = -1

Query: 446 QRQIMKEQDEGLEKLEQTVLSAKHVALAVNEEPDLHARLIDDLDDHVDGTNSRLQRVQKR 267
           Q Q+++EQD  L+ + +T+ +    A  + +E +   +L+D++D+ +DG  ++L R +++
Sbjct: 131 QEQMLREQDVHLDGIHKTMQNLHIQAQTMGDELENQGQLLDNMDEGMDGVVNKLARGRRQ 190

Query: 266 LAVL---NKRAKGGCSCMSLLL 210
           L  +   NK     C C+ LL+
Sbjct: 191 LEWVYEKNKEKYDDC-CIGLLI 211

to top

>STX6_RAT (Q63635) Syntaxin-6|
          Length = 255

 Score = 40.0 bits (92), Expect = 0.004
 Identities = 20/62 (32%), Positives = 37/62 (59%)
 Frame = -1

Query: 446 QRQIMKEQDEGLEKLEQTVLSAKHVALAVNEEPDLHARLIDDLDDHVDGTNSRLQRVQKR 267
           Q+ I+++QDE LE +  ++   K+++  +  E +  A ++DD    ++ T SRL  V K+
Sbjct: 162 QQLIVEQQDEQLELVSGSIGVLKNMSQRIGGELEEQAVMLDDFSHELESTQSRLDNVMKK 221

Query: 266 LA 261
           LA
Sbjct: 222 LA 223

to top

>STX6_MOUSE (Q9JKK1) Syntaxin-6|
          Length = 255

 Score = 40.0 bits (92), Expect = 0.004
 Identities = 20/62 (32%), Positives = 37/62 (59%)
 Frame = -1

Query: 446 QRQIMKEQDEGLEKLEQTVLSAKHVALAVNEEPDLHARLIDDLDDHVDGTNSRLQRVQKR 267
           Q+ I+++QDE LE +  ++   K+++  +  E +  A ++DD    ++ T SRL  V K+
Sbjct: 162 QQLIVEQQDEQLELVSGSIGVLKNMSQRIGGELEEQAVMLDDFSHELESTQSRLDNVMKK 221

Query: 266 LA 261
           LA
Sbjct: 222 LA 223

to top

>SYP71_ARATH (Q9SF29) Syntaxin-71 (AtSYP71)|
          Length = 266

 Score = 37.7 bits (86), Expect = 0.019
 Identities = 21/74 (28%), Positives = 41/74 (55%), Gaps = 1/74 (1%)
 Frame = -1

Query: 428 EQDEGLEKLEQTVLSAKHVALAVNEEPDLHARLIDDLDDHVDGTNSRLQRVQKRLA-VLN 252
           +Q++GL+ + + + + K++A  +NEE D    L+D++D  VD   S L+    RL   +N
Sbjct: 177 KQEQGLDMISEGLDALKNMASDMNEELDRQVPLMDEIDTKVDRATSDLKNTNVRLKDTVN 236

Query: 251 KRAKGGCSCMSLLL 210
           +       C+ ++L
Sbjct: 237 QLRSSRNFCIDIVL 250

to top

>ATX2L_MOUSE (Q7TQH0) Ataxin-2-like protein|
          Length = 1049

 Score = 36.6 bits (83), Expect = 0.043
 Identities = 21/59 (35%), Positives = 27/59 (45%), Gaps = 2/59 (3%)
 Frame = +2

Query: 182  PQASLYRRWTAAGTCRSSRPWRACSGPQASFAHAGGASLYHPHGRLGH--QSVLHVGQA 352
            PQ +LY      GT  S  P  +   PQ+SF         HPH +L H   ++ HV QA
Sbjct: 913  PQQNLYHPGALTGTPPSLPPGPSAQSPQSSFPQPAAVYAIHPHQQLPHGFTNMAHVTQA 971

to top

>SNP30_ARATH (Q9LMG8) Putative SNAP25 homologous protein SNAP30 (AtSNAP30)|
           (Synaptosomal-associated protein SNAP25-like 3)
          Length = 263

 Score = 36.6 bits (83), Expect = 0.043
 Identities = 19/54 (35%), Positives = 29/54 (53%)
 Frame = -1

Query: 428 EQDEGLEKLEQTVLSAKHVALAVNEEPDLHARLIDDLDDHVDGTNSRLQRVQKR 267
           +QD+GL  L   +   K +A+ +  E D   + +D L D VD  NSR+Q   +R
Sbjct: 203 KQDDGLSDLSDILGDLKSMAVDMGSEIDKQNKALDHLGDDVDELNSRVQGANQR 256

to top

>SYP22_ARATH (P93654) Syntaxin-22 (AtSYP22) (AtVAM3)|
          Length = 268

 Score = 36.2 bits (82), Expect = 0.056
 Identities = 22/92 (23%), Positives = 47/92 (51%), Gaps = 4/92 (4%)
 Frame = -1

Query: 473 LDNQGIVGLQRQIMKEQDEGLEKLEQTVLSA----KHVALAVNEEPDLHARLIDDLDDHV 306
           LDN+  +     +++E+++G++++ Q +       K +A+ VN++      +IDD+  H+
Sbjct: 167 LDNE--IAFNEAVIEEREQGIQEIHQQIGEVNEIFKDLAVLVNDQ----GVMIDDIGTHI 220

Query: 305 DGTNSRLQRVQKRLAVLNKRAKGGCSCMSLLL 210
           D + +   + + +L    K  K   S   LLL
Sbjct: 221 DNSRAATSQGKSQLVQAAKTQKSNSSLTCLLL 252

to top

>BET12_ARATH (Q94CG2) Bet1-like SNARE 1-2 (AtBET12) (Bet1/Sft1-like SNARE 14b)|
           (AtBS14b)
          Length = 130

 Score = 34.7 bits (78), Expect = 0.16
 Identities = 18/69 (26%), Positives = 33/69 (47%)
 Frame = -1

Query: 431 KEQDEGLEKLEQTVLSAKHVALAVNEEPDLHARLIDDLDDHVDGTNSRLQRVQKRLAVLN 252
           ++ DE LE L+  V   K V   ++EE + H RL+D + + +D     +     R  ++ 
Sbjct: 37  RDNDEALENLQDRVSFLKRVTGDIHEEVENHNRLLDKVGNKMDSARGIMSGTINRFKLVF 96

Query: 251 KRAKGGCSC 225
           ++     SC
Sbjct: 97  EKKSNRKSC 105

to top

>SEC9_CANGA (Q6FY22) Protein transport protein SEC9|
          Length = 694

 Score = 34.3 bits (77), Expect = 0.21
 Identities = 19/56 (33%), Positives = 30/56 (53%)
 Frame = -1

Query: 428 EQDEGLEKLEQTVLSAKHVALAVNEEPDLHARLIDDLDDHVDGTNSRLQRVQKRLA 261
           E D  L+K++Q     K +ALA  EE D   R I D++++ D  + ++     RLA
Sbjct: 636 EIDRNLDKIQQISGRLKKLALATGEELDSQQRRIRDIEENTDEMDIKIHMNTTRLA 691

to top

>MUKB_HAEDU (Q7VL96) Chromosome partition protein mukB (Structural maintenance|
           of chromosome-related protein)
          Length = 1503

 Score = 33.9 bits (76), Expect = 0.28
 Identities = 25/71 (35%), Positives = 38/71 (53%), Gaps = 3/71 (4%)
 Frame = -1

Query: 446 QRQIMKEQDEG---LEKLEQTVLSAKHVALAVNEEPDLHARLIDDLDDHVDGTNSRLQRV 276
           Q +I++ QDE     EKLEQ  ++ + V+  V E+   H    D++DD VDG  S++   
Sbjct: 376 QEKIIRYQDEVDALNEKLEQQQIALEEVSEQV-EDAQAHT---DEIDDRVDGLRSQIADY 431

Query: 275 QKRLAVLNKRA 243
           Q+ L     RA
Sbjct: 432 QQALDAQQTRA 442

to top

>BET11_ARATH (Q9M2J9) Bet1-like SNARE 1-1 (AtBET11) (Bet1/Sft1-like SNARE 14a)|
           (AtBS14a)
          Length = 122

 Score = 33.9 bits (76), Expect = 0.28
 Identities = 16/54 (29%), Positives = 28/54 (51%)
 Frame = -1

Query: 428 EQDEGLEKLEQTVLSAKHVALAVNEEPDLHARLIDDLDDHVDGTNSRLQRVQKR 267
           E +  LE L+  V+  K ++  +NEE D H R++D + + +D +   L     R
Sbjct: 37  ENERALEGLQDRVILLKRLSGDINEEVDTHNRMLDRMGNDMDSSRGFLSGTMDR 90

to top

>SNP33_ARATH (Q9S7P9) SNAP25 homologous protein SNAP33 (AtSNAP33)|
           (Synaptosomal-associated protein SNAP25-like 1)
           (SNAP-25-like protein 1) (Snap25a)
          Length = 300

 Score = 32.7 bits (73), Expect = 0.62
 Identities = 17/54 (31%), Positives = 30/54 (55%)
 Frame = -1

Query: 428 EQDEGLEKLEQTVLSAKHVALAVNEEPDLHARLIDDLDDHVDGTNSRLQRVQKR 267
           +QD+GL  L   +   K++A+ +  E +   + +D L D VD  N R+Q+  +R
Sbjct: 240 KQDDGLSDLSDILGELKNMAVDMGSEIEKQNKGLDHLHDDVDELNFRVQQSNQR 293

to top

>NOP14_YEAST (Q99207) Nucleolar complex protein 14 (U3 small nucleolar|
           RNA-associated protein 2) (U3 snoRNA-associated protein
           2)
          Length = 810

 Score = 32.7 bits (73), Expect = 0.62
 Identities = 25/83 (30%), Positives = 40/83 (48%), Gaps = 5/83 (6%)
 Frame = -1

Query: 470 DNQGIVGLQRQIMKEQDEGLEKLEQTVLSAKHVALAVNEEPDLHARLID-----DLDDHV 306
           DN GI      I K +D+G ++    +L  K+++++    P  H  L+D     DLDDH 
Sbjct: 345 DNDGIADSDDDI-KFEDQGRDEGFSQILKKKNISISC---PRTHDALLDQVKKLDLDDHP 400

Query: 305 DGTNSRLQRVQKRLAVLNKRAKG 237
               + ++  Q +LA  NK   G
Sbjct: 401 KIVKNIIKAYQPKLAEGNKEKLG 423

to top

>Y1680_MANSM (Q65RX3) UPF0054 protein MS1680|
          Length = 156

 Score = 32.3 bits (72), Expect = 0.81
 Identities = 16/49 (32%), Positives = 25/49 (51%)
 Frame = -1

Query: 455 VGLQRQIMKEQDEGLEKLEQTVLSAKHVALAVNEEPDLHARLIDDLDDH 309
           V +  QI  E    L  LEQ  L A +   A + EP++  R++D+ + H
Sbjct: 5   VTIDLQIASEDQSNLPTLEQFTLWATNAVRAEHFEPEITIRIVDEAESH 53

to top

>ARFH_ARATH (Q9FGV1) Auxin response factor 8|
          Length = 811

 Score = 32.0 bits (71), Expect = 1.1
 Identities = 12/30 (40%), Positives = 16/30 (53%)
 Frame = +2

Query: 224 CRSSRPWRACSGPQASFAHAGGASLYHPHG 313
           C +S  W AC+GP  S   +G   +Y P G
Sbjct: 18  CLNSELWHACAGPLVSLPSSGSRVVYFPQG 47

to top

>FLIF_TREPA (O83414) Flagellar M-ring protein|
          Length = 567

 Score = 31.6 bits (70), Expect = 1.4
 Identities = 22/68 (32%), Positives = 33/68 (48%), Gaps = 4/68 (5%)
 Frame = -1

Query: 518 GQSKKAADDMSRVAGLDNQGIVGLQRQIMKEQDEGLEKLEQTVLSAKHVALAVNEE---- 351
           GQ+  A  DMS   GL NQ +V  Q  I K +   + ++   VL  + V++ ++ E    
Sbjct: 339 GQTPPAYKDMSNQVGLSNQSVVKKQEAISKSE---INEVVSPVLGRRTVSVNIDGEWRKK 395

Query: 350 PDLHARLI 327
            D H R I
Sbjct: 396 RDEHGRFI 403

to top

>BRO1_NEUCR (Q7SAN9) Vacuolar protein-sorting protein bro-1 (BRO|
           domain-containing protein 1)
          Length = 1012

 Score = 31.6 bits (70), Expect = 1.4
 Identities = 22/90 (24%), Positives = 45/90 (50%), Gaps = 1/90 (1%)
 Frame = -1

Query: 515 QSKKAADDMSRVAGLDNQGIVGLQRQIMKEQDEGLEKLEQTVLSAKHVALAVNEEPDLHA 336
           + K  +DD+S++  L+ + I   ++Q+ +++ E     +  ++ A H   A+  E  +  
Sbjct: 616 KQKAHSDDISQILILNKKSIANYEQQLFQQELEKFRPHQNRLVQASHKQAALMRELTVTF 675

Query: 335 RLIDDLDDHVDGTNSRLQRVQK-RLAVLNK 249
             +   D  V    SR + VQ+ R +V+NK
Sbjct: 676 NNLLQ-DKRVRADQSRYESVQRSRTSVINK 704

to top

>RB6I2_HUMAN (Q8IUD2) RAB6-interacting protein 2 (ERC protein 1)|
          Length = 1116

 Score = 30.0 bits (66), Expect = 4.0
 Identities = 17/66 (25%), Positives = 36/66 (54%)
 Frame = -1

Query: 446 QRQIMKEQDEGLEKLEQTVLSAKHVALAVNEEPDLHARLIDDLDDHVDGTNSRLQRVQKR 267
           Q+Q +  +DE ++KL + +L +K ++    EE     R + + + HV    S L++ +K 
Sbjct: 298 QKQTLNARDESIKKLLE-MLQSKGLSAKATEEDHERTRRLAEAEMHVHHLESLLEQKEKE 356

Query: 266 LAVLNK 249
            ++L +
Sbjct: 357 NSMLRE 362

to top

>ARFC_ARATH (O23661) Auxin response factor 3 (Protein ETTIN)|
          Length = 608

 Score = 30.0 bits (66), Expect = 4.0
 Identities = 12/26 (46%), Positives = 13/26 (50%)
 Frame = +2

Query: 242 WRACSGPQASFAHAGGASLYHPHGRL 319
           W AC+GP  S    G   LY P G L
Sbjct: 56  WHACAGPLISLPKRGSLVLYFPQGHL 81

to top

>CING_HUMAN (Q9P2M7) Cingulin|
          Length = 1197

 Score = 30.0 bits (66), Expect = 4.0
 Identities = 19/64 (29%), Positives = 35/64 (54%)
 Frame = -1

Query: 455 VGLQRQIMKEQDEGLEKLEQTVLSAKHVALAVNEEPDLHARLIDDLDDHVDGTNSRLQRV 276
           VGL+RQ+ +E+ E   +L++ +   K  A   N+E     RL+D  +D   G  +++  +
Sbjct: 384 VGLERQL-EEKTEECSRLQELLERRKGEAQQSNKELQNMKRLLDQGEDLRHGLETQVMEL 442

Query: 275 QKRL 264
           Q +L
Sbjct: 443 QNKL 446

to top

>ISPH_PROAC (Q6AA89) 4-hydroxy-3-methylbut-2-enyl diphosphate reductase (EC|
           1.17.1.2)
          Length = 323

 Score = 29.6 bits (65), Expect = 5.3
 Identities = 17/56 (30%), Positives = 25/56 (44%)
 Frame = -1

Query: 428 EQDEGLEKLEQTVLSAKHVALAVNEEPDLHARLIDDLDDHVDGTNSRLQRVQKRLA 261
           ++D  +  L QT LS       V+   DLH +LID   D +       Q   K++A
Sbjct: 162 DRDRPVAWLSQTTLSVDETVETVDRIRDLHPQLIDPPSDDICYATQNRQHAVKQMA 217

to top

>BRO1_GIBZE (Q4IBS9) Vacuolar protein-sorting protein BRO1 (BRO|
           domain-containing protein 1)
          Length = 995

 Score = 29.6 bits (65), Expect = 5.3
 Identities = 22/91 (24%), Positives = 45/91 (49%), Gaps = 2/91 (2%)
 Frame = -1

Query: 515 QSKKAADDMSRVAGLDNQGIVGLQRQIMKEQDEGLEKLEQTVLSAKHVALAVNEE-PDLH 339
           + K   DD+S++  L+ + I   + Q+ +++ E     +  +L A H   A+ +E     
Sbjct: 617 KEKAHNDDISQILILNKKSISNYEAQLFEQELEKFRPHQNRLLQANHKQSALMKELTSAF 676

Query: 338 ARLIDDLDDHVDGTNSRLQRVQK-RLAVLNK 249
            RL+   D  V    S+ + +Q+ R +V+N+
Sbjct: 677 NRLLQ--DKRVQSEQSKYETIQRQRSSVINR 705

to top

>ARFG_ARATH (P93022) Auxin response factor 7 (Non-phototropic hypocotyl 4)|
           (Protein BIPOSTO) (Auxin-responsive protein
           IAA21/IAA23/IAA25)
          Length = 1164

 Score = 29.6 bits (65), Expect = 5.3
 Identities = 12/28 (42%), Positives = 15/28 (53%)
 Frame = +2

Query: 230 SSRPWRACSGPQASFAHAGGASLYHPHG 313
           +S  W AC+GP  S   AG   +Y P G
Sbjct: 22  NSELWHACAGPLISLPPAGSLVVYFPQG 49

to top

>FUT4_ARATH (Q9SJP2) Probable fucosyltransferase 4 (EC 2.4.1.-) (AtFUT4)|
          Length = 503

 Score = 29.3 bits (64), Expect = 6.9
 Identities = 10/28 (35%), Positives = 21/28 (75%)
 Frame = -3

Query: 129 VSSVQSFKDIMVTSASPSFWREMENMYA 46
           +S++   K ++VTS SP + +++ENM++
Sbjct: 346 ISNIPKSKAVLVTSLSPEYSKKLENMFS 373

to top

>ATX2L_HUMAN (Q8WWM7) Ataxin-2-like protein (Ataxin-2 domain protein)|
            (Ataxin-2-related protein)
          Length = 1075

 Score = 29.3 bits (64), Expect = 6.9
 Identities = 19/60 (31%), Positives = 24/60 (40%), Gaps = 6/60 (10%)
 Frame = +2

Query: 182  PQASLYRRWTAAGTCRSSRPWRACSGPQASFAHAGGASLYH----PHG--RLGHQSVLHV 343
            PQ +LY      GT  S  P  +   PQ+SF         H    PHG   + H +  HV
Sbjct: 909  PQQNLYHPGALTGTPPSLPPGPSAQSPQSSFPQPAAVYAIHHQQLPHGFTNMAHVTQAHV 968

to top

>KIFC3_MOUSE (O35231) Kinesin-like protein KIFC3|
          Length = 687

 Score = 29.3 bits (64), Expect = 6.9
 Identities = 16/67 (23%), Positives = 33/67 (49%), Gaps = 1/67 (1%)
 Frame = -1

Query: 455 VGLQRQIMKEQDEGLEKLEQ-TVLSAKHVALAVNEEPDLHARLIDDLDDHVDGTNSRLQR 279
           V +QRQ++KE ++ L+   Q TV     +A+   E    H ++++++    +  N  ++ 
Sbjct: 147 VAMQRQVLKEMEQQLQNSHQLTVQLRAQIAMYEAELERAHGQMLEEMQSLEEDKNRAIEE 206

Query: 278 VQKRLAV 258
              R  V
Sbjct: 207 AFARAQV 213

to top

>RB6I2_MOUSE (Q99MI1) RAB6-interacting protein 2 (ERC protein 1) (ERC1)|
           (CAZ-associated structural protein 2) (CAST2)
          Length = 1120

 Score = 28.9 bits (63), Expect = 9.0
 Identities = 17/66 (25%), Positives = 35/66 (53%)
 Frame = -1

Query: 446 QRQIMKEQDEGLEKLEQTVLSAKHVALAVNEEPDLHARLIDDLDDHVDGTNSRLQRVQKR 267
           Q+Q +  +DE ++KL + +L +K ++    EE     R + + + HV    S L++ +K 
Sbjct: 298 QKQTLNARDESIKKLLE-MLQSKGLSAKATEEDHERTRRLAEAEMHVHHLESLLEQKEKE 356

Query: 266 LAVLNK 249
             +L +
Sbjct: 357 NNMLRE 362

to top

>TNR19_HUMAN (Q9NS68) Tumor necrosis factor receptor superfamily member 19|
           precursor (Toxicity and JNK inducer) (TRADE)
          Length = 423

 Score = 28.9 bits (63), Expect = 9.0
 Identities = 15/43 (34%), Positives = 21/43 (48%)
 Frame = -3

Query: 309 CGWYKLAPPACAKEACGPEQARQGRLLLHVPAAVHRRYSDACG 181
           CG  +L P  C +EAC P  A  G   +H  A++  R +   G
Sbjct: 245 CGPVRLLPSMCCEEACSPNPATLG-CGVHSAASLQARNAGPAG 286

to top

>ARFS_ARATH (Q8RYC8) Auxin response factor 19 (Auxin-responsive protein IAA22)|
          Length = 1086

 Score = 28.9 bits (63), Expect = 9.0
 Identities = 11/28 (39%), Positives = 15/28 (53%)
 Frame = +2

Query: 230 SSRPWRACSGPQASFAHAGGASLYHPHG 313
           +S+ W AC+GP  S    G   +Y P G
Sbjct: 21  NSQLWHACAGPLVSLPPVGSLVVYFPQG 48

to top

>NBP1_YEAST (P52919) NAP1-binding protein|
          Length = 319

 Score = 28.9 bits (63), Expect = 9.0
 Identities = 24/70 (34%), Positives = 34/70 (48%)
 Frame = -1

Query: 449 LQRQIMKEQDEGLEKLEQTVLSAKHVALAVNEEPDLHARLIDDLDDHVDGTNSRLQRVQK 270
           LQRQI K++DE ++ LE  + S +      NE+  +   L+D  + H   T SR  R   
Sbjct: 178 LQRQI-KKRDEKIKALESKLQSLQEALNYSNEKYRILEDLLDSSNIHPSYTKSR--RTMS 234

Query: 269 RLAVLNKRAK 240
            LA  N   K
Sbjct: 235 NLARENDEIK 244

to top

>RB6I2_RAT (Q811U3) RAB6-interacting protein 2 (ERC protein 1) (ERC1)|
           (CAZ-associated structural protein 2) (CAST2)
          Length = 948

 Score = 28.9 bits (63), Expect = 9.0
 Identities = 17/66 (25%), Positives = 35/66 (53%)
 Frame = -1

Query: 446 QRQIMKEQDEGLEKLEQTVLSAKHVALAVNEEPDLHARLIDDLDDHVDGTNSRLQRVQKR 267
           Q+Q +  +DE ++KL + +L +K ++    EE     R + + + HV    S L++ +K 
Sbjct: 298 QKQTLNARDESIKKLLE-MLQSKGLSAKATEEDHERTRRLAEAEMHVHHLESLLEQKEKE 356

Query: 266 LAVLNK 249
             +L +
Sbjct: 357 NNMLRE 362

to top

>KIFC3_HUMAN (Q9BVG8) Kinesin-like protein KIFC3|
          Length = 694

 Score = 28.9 bits (63), Expect = 9.0
 Identities = 15/67 (22%), Positives = 33/67 (49%), Gaps = 1/67 (1%)
 Frame = -1

Query: 455 VGLQRQIMKEQDEGLEKLEQ-TVLSAKHVALAVNEEPDLHARLIDDLDDHVDGTNSRLQR 279
           V +QRQ++KE ++ L+   Q T      +A+  +E    H ++++++    +  N  ++ 
Sbjct: 147 VAMQRQVLKEMEQQLQSSHQLTARLRAQIAMYESELERAHGQMLEEMQSLEEDKNRAIEE 206

Query: 278 VQKRLAV 258
              R  V
Sbjct: 207 AFARAQV 213

to top

>ARFD_ARATH (Q9ZTX9) Auxin response factor 4|
          Length = 788

 Score = 28.9 bits (63), Expect = 9.0
 Identities = 12/43 (27%), Positives = 19/43 (44%)
 Frame = +2

Query: 209 TAAGTCRSSRPWRACSGPQASFAHAGGASLYHPHGRLGHQSVL 337
           T + +   S  W AC+GP       G   +Y P G L   +++
Sbjct: 56  TGSASSIYSELWHACAGPLTCLPKKGNVVVYFPQGHLEQDAMV 98

to top

>PTH_BORPE (Q7VUH3) Peptidyl-tRNA hydrolase (EC 3.1.1.29) (PTH)|
          Length = 215

 Score = 28.9 bits (63), Expect = 9.0
 Identities = 18/53 (33%), Positives = 22/53 (41%), Gaps = 12/53 (22%)
 Frame = -3

Query: 189 ACGYCLAPHQVSVTSAQLKAV------------SSVQSFKDIMVTSASPSFWR 67
           AC Y LAP QV V   +L  +            +     KDI     SP+FWR
Sbjct: 98  ACFYKLAPEQVLVLHDELDLLPGQVKIKQGGGHAGHNGLKDIQAALGSPNFWR 150

to top

>I27RA_MOUSE (O70394) Interleukin-27 receptor alpha chain precursor|
           (IL-27R-alpha) (WSX-1) (Type I T-cell cytokine receptor)
           (TCCR)
          Length = 623

 Score = 28.9 bits (63), Expect = 9.0
 Identities = 17/53 (32%), Positives = 28/53 (52%), Gaps = 3/53 (5%)
 Frame = -3

Query: 168 PHQVSVT---SAQLKAVSSVQSFKDIMVTSASPSFWREMENMYATCAP*WVEM 19
           P++++VT   S  L A  SV  F++ +V  A P+ WR  ++   T    W E+
Sbjct: 382 PYRITVTAVYSGGLAAAPSVWGFREELVPLAGPAVWRLPDDPPGTPVVAWGEV 434


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 69,745,743
Number of Sequences: 219361
Number of extensions: 1262037
Number of successful extensions: 4137
Number of sequences better than 10.0: 48
Number of HSP's better than 10.0 without gapping: 4060
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4136
length of database: 80,573,946
effective HSP length: 105
effective length of database: 57,541,041
effective search space used: 3970331829
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)

to top

full-length cDNA and EST

Clone Information

BLAST Search Result