ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbart23e01
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1PLSX_PROMA (Q7VE56) Fatty acid/phospholipid synthesis protein plsX 31 1.4
2SGCX_ECOLI (P39366) Putative sgc region protein sgcX 28 9.4
3LAMA5_HUMAN (O15230) Laminin alpha-5 chain precursor 28 9.4

>PLSX_PROMA (Q7VE56) Fatty acid/phospholipid synthesis protein plsX|
          Length = 436

 Score = 31.2 bits (69), Expect = 1.4
 Identities = 13/42 (30%), Positives = 23/42 (54%), Gaps = 3/42 (7%)
 Frame = +1

Query: 91  RNEVIDAKNVWIS---SGGTQAPGECRDGCMLGLQLFTPSIK 207
           RN++ ++K +W++    GG  APG   +GC+  +      IK
Sbjct: 88  RNDIANSKRLWVAVDGMGGDNAPGSILEGCLQAIDRLPLCIK 129



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>SGCX_ECOLI (P39366) Putative sgc region protein sgcX|
          Length = 373

 Score = 28.5 bits (62), Expect = 9.4
 Identities = 14/39 (35%), Positives = 19/39 (48%)
 Frame = +1

Query: 31  PVPSIGASCRYTHSDHFVASRNEVIDAKNVWISSGGTQA 147
           P  S+   CRYTHS   VAS  ++ D   +  +  G  A
Sbjct: 317 PCASLSIPCRYTHSPAEVASLRDLTDCIRLLTALAGMSA 355



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>LAMA5_HUMAN (O15230) Laminin alpha-5 chain precursor|
          Length = 3695

 Score = 28.5 bits (62), Expect = 9.4
 Identities = 20/68 (29%), Positives = 24/68 (35%)
 Frame = +1

Query: 166  GCMLGLQLFTPSIKPRDRYLCTVY***HLRPPSMAMAGRRSIHPAIHPSHRIPPXXXXXX 345
            GC   LQ  TP + PR                +   A RRS  PA HP+  +PP      
Sbjct: 3291 GCAPALQAQTPGLGPRGLQA------------TARKASRRSRQPARHPACMLPPHLRTTR 3338

Query: 346  XXXXXXGS 369
                  GS
Sbjct: 3339 DSYQFGGS 3346


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 70,229,442
Number of Sequences: 219361
Number of extensions: 1352222
Number of successful extensions: 2945
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 2868
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2944
length of database: 80,573,946
effective HSP length: 103
effective length of database: 57,979,763
effective search space used: 3188886965
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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