ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbart23d11 |
|---|---|
| Clone Library Name | barley_pub |
>ODPB_RAT (P49432) Pyruvate dehydrogenase E1 component subunit beta,| mitochondrial precursor (EC 1.2.4.1) (PDHE1-B) Length = 359 Score = 31.2 bits (69), Expect = 0.63 Identities = 12/32 (37%), Positives = 17/32 (53%) Frame = -3 Query: 301 LPVTMRAPRVGRAGSSAQGALCLATWFWWSPG 206 +P+ R P AG +AQ + C A W+ PG Sbjct: 140 VPIVFRGPNGASAGVAAQHSQCFAAWYGHCPG 171
>ODPB_MOUSE (Q9D051) Pyruvate dehydrogenase E1 component subunit beta,| mitochondrial precursor (EC 1.2.4.1) (PDHE1-B) Length = 359 Score = 31.2 bits (69), Expect = 0.63 Identities = 12/32 (37%), Positives = 17/32 (53%) Frame = -3 Query: 301 LPVTMRAPRVGRAGSSAQGALCLATWFWWSPG 206 +P+ R P AG +AQ + C A W+ PG Sbjct: 140 VPIVFRGPNGASAGVAAQHSQCFAAWYGHCPG 171
>ODPB_HUMAN (P11177) Pyruvate dehydrogenase E1 component subunit beta,| mitochondrial precursor (EC 1.2.4.1) (PDHE1-B) Length = 359 Score = 31.2 bits (69), Expect = 0.63 Identities = 12/32 (37%), Positives = 17/32 (53%) Frame = -3 Query: 301 LPVTMRAPRVGRAGSSAQGALCLATWFWWSPG 206 +P+ R P AG +AQ + C A W+ PG Sbjct: 140 VPIVFRGPNGASAGVAAQHSQCFAAWYGHCPG 171
>SHAN1_HUMAN (Q9Y566) SH3 and multiple ankyrin repeat domains protein 1 (Shank1)| (Somatostatin receptor-interacting protein) (SSTR-interacting protein) (SSTRIP) Length = 2161 Score = 30.4 bits (67), Expect = 1.1 Identities = 21/60 (35%), Positives = 24/60 (40%), Gaps = 8/60 (13%) Frame = +3 Query: 195 HHQKPGDHQNHVAKHKAPCADDPARPTLGARIVTG--------STLAGARRVGHRLAPTS 350 HH P H V + DPAR LG R G S A R + HRL PT+ Sbjct: 1393 HHHSPHAHHEPVLRLWGASPPDPARRELGYRAGLGSQEKSLPASPPAARRSLLHRLPPTA 1452
>S6A19_HUMAN (Q695T7) Sodium-dependent neutral amino acid transporter B(0)| (System B(0) neutral amino acid transporter) (B(0)AT1) (Solute carrier family 6 member 19) Length = 634 Score = 30.4 bits (67), Expect = 1.1 Identities = 12/20 (60%), Positives = 16/20 (80%) Frame = +3 Query: 174 MYRIIRLHHQKPGDHQNHVA 233 +Y++IR H QKPGDHQ V+ Sbjct: 602 IYKLIRNHCQKPGDHQGLVS 621
>IL2RG_BOVIN (Q95118) Cytokine receptor common gamma chain precursor (Gamma-C)| (Interleukin-2 receptor gamma chain) (IL-2R gamma chain) (p64) (CD132 antigen) Length = 379 Score = 30.0 bits (66), Expect = 1.4 Identities = 19/62 (30%), Positives = 30/62 (48%), Gaps = 4/62 (6%) Frame = +2 Query: 80 LHYVVHHFGG---INEFGN-TFRKGIKKKSWFVPMHVQNYQTTPSKTRRPPEPRSQAQGS 247 LHY +F G + E G+ F +GI WF ++ Y+T + + P E R Q + Sbjct: 93 LHYGYRNFNGDDKLQECGHYLFSEGITSGCWFGKKEIRLYETFVVQLQDPREHRKQPKQM 152 Query: 248 LR 253 L+ Sbjct: 153 LK 154
>LRC17_HUMAN (Q8N6Y2) Leucine-rich repeat-containing protein 17 precursor| (p37NB) Length = 441 Score = 29.6 bits (65), Expect = 1.8 Identities = 14/56 (25%), Positives = 27/56 (48%) Frame = +2 Query: 65 YDVHRLHYVVHHFGGINEFGNTFRKGIKKKSWFVPMHVQNYQTTPSKTRRPPEPRS 232 Y++H L+Y + H ++ G + + K W V ++++Y K + P P S Sbjct: 356 YNIHYLYYWLKHHYNVHFNGLECKTPEEYKGWSVGKYIRSYYEECPKDKLPAYPES 411
>SYST_LYCES (P27058) Systemin precursor| Length = 200 Score = 29.3 bits (64), Expect = 2.4 Identities = 13/52 (25%), Positives = 25/52 (48%) Frame = +3 Query: 150 KNHGSCQCMYRIIRLHHQKPGDHQNHVAKHKAPCADDPARPTLGARIVTGST 305 KN G ++LHH+K GD + + + + P D + T+ + ++ T Sbjct: 9 KNKGDDMQEEPKVKLHHEKGGDEKEKIIEKETPSQDINNKDTISSYVLRDDT 60
>REP_STRLI (P22406) Protein rep| Length = 456 Score = 29.3 bits (64), Expect = 2.4 Identities = 15/30 (50%), Positives = 18/30 (60%), Gaps = 1/30 (3%) Frame = +3 Query: 255 DDPARPTLGARIVTGSTLAGAR-RVGHRLA 341 D P RP R++TG T AG R + GHR A Sbjct: 90 DSPRRPGAYQRLITGGTWAGRRAKDGHRAA 119
>PPCK_LEPIN (Q8F9E4) Phosphoenolpyruvate carboxykinase [ATP] (EC 4.1.1.49) (PEP| carboxykinase) (Phosphoenolpyruvate carboxylase) (PEPCK) Length = 530 Score = 29.3 bits (64), Expect = 2.4 Identities = 12/43 (27%), Positives = 21/43 (48%) Frame = +2 Query: 32 ILQYTYKQCIHYDVHRLHYVVHHFGGINEFGNTFRKGIKKKSW 160 I YK+C++Y H+ YV + G N + + +K+W Sbjct: 87 IFDELYKKCVNYLSHKKLYVFDGYAGANPETRVSLRVVSEKAW 129
>PPCK_LEPIC (Q72VT0) Phosphoenolpyruvate carboxykinase [ATP] (EC 4.1.1.49) (PEP| carboxykinase) (Phosphoenolpyruvate carboxylase) (PEPCK) Length = 530 Score = 29.3 bits (64), Expect = 2.4 Identities = 12/43 (27%), Positives = 21/43 (48%) Frame = +2 Query: 32 ILQYTYKQCIHYDVHRLHYVVHHFGGINEFGNTFRKGIKKKSW 160 I YK+C++Y H+ YV + G N + + +K+W Sbjct: 87 IFDELYKKCVNYLSHKKLYVFDGYAGANPETRVSLRVVSEKAW 129
>ODPB_ARATH (Q38799) Pyruvate dehydrogenase E1 component subunit beta,| mitochondrial precursor (EC 1.2.4.1) (PDHE1-B) Length = 363 Score = 29.3 bits (64), Expect = 2.4 Identities = 12/32 (37%), Positives = 16/32 (50%) Frame = -3 Query: 301 LPVTMRAPRVGRAGSSAQGALCLATWFWWSPG 206 +P+ R P AG AQ + C A W+ PG Sbjct: 143 VPIVFRGPNGAAAGVGAQHSQCYAAWYASVPG 174
>LRC17_MOUSE (Q9CXD9) Leucine-rich repeat-containing protein 17 precursor| Length = 443 Score = 28.9 bits (63), Expect = 3.1 Identities = 14/56 (25%), Positives = 26/56 (46%) Frame = +2 Query: 65 YDVHRLHYVVHHFGGINEFGNTFRKGIKKKSWFVPMHVQNYQTTPSKTRRPPEPRS 232 Y +H L+Y + H ++ G + + K W V +V++Y K + P P + Sbjct: 358 YSIHYLYYWLKHHYNVHYNGLECKTPEEYKGWSVGKYVRSYYEECPKDKLPAYPET 413
>AKR1_NEUCR (Q7S3M5) Palmitoyltransferase AKR1 (EC 2.3.1.-) (Ankyrin| repeat-containing protein AKR1) Length = 729 Score = 28.1 bits (61), Expect = 5.3 Identities = 12/37 (32%), Positives = 16/37 (43%) Frame = +3 Query: 192 LHHQKPGDHQNHVAKHKAPCADDPARPTLGARIVTGS 302 +HH H H A + P D A P L + + GS Sbjct: 2 VHHDGADAHAGHAAPAQPPMKSDTATPKLNSEVELGS 38
>YAL7_SCHPO (Q09929) Hypothetical protein C21E11.07 in chromosome I| Length = 325 Score = 28.1 bits (61), Expect = 5.3 Identities = 17/50 (34%), Positives = 24/50 (48%), Gaps = 4/50 (8%) Frame = +2 Query: 128 TFRKGIKKKSWFVPMHVQNYQTTPSKTRRPPEPRS----QAQGSLRRRPG 265 T+ G+ +K F P + NY+ PS+ P P S Q + RR PG Sbjct: 228 TYYTGVTRKRIF-PFIIPNYEDNPSQVIEPSAPLSIVAKQGEPVSRRSPG 276
>FBX46_MOUSE (Q8BG80) F-box only protein 46 (F-box only protein 34-like)| Length = 603 Score = 28.1 bits (61), Expect = 5.3 Identities = 14/40 (35%), Positives = 20/40 (50%) Frame = -3 Query: 325 TRRAPASVLPVTMRAPRVGRAGSSAQGALCLATWFWWSPG 206 T A A+ P + AP + A S +G + L TW+ PG Sbjct: 56 TPPAVAAEAPTSQPAPLLSTAASGDEGRVLLDTWYVIKPG 95
>APCE_GALSU (P35911) Phycobilisome linker polypeptide (Anchor polypeptide)| (PBS-anchor protein) Length = 863 Score = 27.7 bits (60), Expect = 6.9 Identities = 11/22 (50%), Positives = 17/22 (77%) Frame = +2 Query: 143 IKKKSWFVPMHVQNYQTTPSKT 208 I+K S VP+++Q Y+TTP +T Sbjct: 3 IRKNSGLVPINIQLYKTTPIQT 24
>ENAM_HUMAN (Q9NRM1) Enamelin precursor| Length = 1142 Score = 27.7 bits (60), Expect = 6.9 Identities = 20/66 (30%), Positives = 29/66 (43%), Gaps = 1/66 (1%) Frame = +2 Query: 125 NTFRKGIKKKSWFVPMHVQNYQTTPSKTRRPPEPRSQAQGSLRRRP-GTTNSWRPHCHWQ 301 +T I+ + ++V ++T +R + R QAQG RRP N W H Q Sbjct: 735 STMPPPIESRGYYVNNAAGPEESTLFPSRNSWDHRIQAQGQRERRPYFNRNIWDQATHLQ 794 Query: 302 HARWRP 319 A RP Sbjct: 795 KAPARP 800
>DSX_DROME (P23023) Protein doublesex| Length = 549 Score = 27.7 bits (60), Expect = 6.9 Identities = 16/51 (31%), Positives = 23/51 (45%), Gaps = 2/51 (3%) Frame = +3 Query: 186 IRLHHQKPGDHQNH--VAKHKAPCADDPARPTLGARIVTGSTLAGARRVGH 332 + HH G H +H V H+ A A P+ A + GS+ A + GH Sbjct: 134 VHAHHAHGGHHSHHGHVLHHQQAAAAAAAAPSAPASHLGGSSTAASSIHGH 184
>MUS81_NEUCR (Q7SD49) Crossover junction endonuclease mus-81 (EC 3.1.22.-)| Length = 645 Score = 27.7 bits (60), Expect = 6.9 Identities = 10/36 (27%), Positives = 21/36 (58%) Frame = +2 Query: 140 GIKKKSWFVPMHVQNYQTTPSKTRRPPEPRSQAQGS 247 G+K++S + P+ ++ + TT + RP +P+ S Sbjct: 254 GVKRESRYTPLDLKPFVTTTATPERPLQPKPHTANS 289
>PITM1_HUMAN (O00562) Membrane-associated phosphatidylinositol transfer protein| 1 (Phosphatidylinositol transfer protein, membrane-associated 1) (Pyk2 N-terminal domain-interacting receptor 2) (NIR-2) (Drosophila retinal degeneration B homolog) Length = 1243 Score = 27.7 bits (60), Expect = 6.9 Identities = 12/23 (52%), Positives = 15/23 (65%) Frame = +2 Query: 218 PEPRSQAQGSLRRRPGTTNSWRP 286 PEP +Q SL+ P TT+SW P Sbjct: 639 PEPEG-SQNSLQAAPATTSSWEP 660
>FBX46_HUMAN (Q6PJ61) F-box only protein 46 (F-box only protein 34-like)| Length = 646 Score = 27.3 bits (59), Expect = 9.0 Identities = 13/40 (32%), Positives = 21/40 (52%) Frame = -3 Query: 325 TRRAPASVLPVTMRAPRVGRAGSSAQGALCLATWFWWSPG 206 T A A+ +P + AP + A + +G + L TW+ PG Sbjct: 56 TPPALATEVPASQPAPLLSAAAAGDEGRVLLDTWYVIKPG 95
>VGLG_RABVT (P32550) Spike glycoprotein precursor| Length = 524 Score = 27.3 bits (59), Expect = 9.0 Identities = 13/28 (46%), Positives = 15/28 (53%) Frame = +1 Query: 130 FPEGNKKKIMVRANACTELSDYTIKNPE 213 FP GN I V + C+ DYTI PE Sbjct: 173 FPSGNCSGITVSSTYCSTNHDYTIWMPE 200
>HMBX1_HUMAN (Q6NT76) Homeobox-containing protein 1| Length = 420 Score = 27.3 bits (59), Expect = 9.0 Identities = 11/28 (39%), Positives = 15/28 (53%) Frame = +2 Query: 209 RRPPEPRSQAQGSLRRRPGTTNSWRPHC 292 R+ P P S G+ R R G+ +WR C Sbjct: 251 RQTPPPVSATSGTFRLRRGSRFTWRKEC 278
>ZNHI4_MOUSE (Q99PT3) Zinc finger HIT domain-containing protein 4| (PAP-1-associated protein 1) (PAPA-1) (High mobility group AT-hook 1-like 4) Length = 345 Score = 27.3 bits (59), Expect = 9.0 Identities = 12/43 (27%), Positives = 20/43 (46%) Frame = +3 Query: 198 HQKPGDHQNHVAKHKAPCADDPARPTLGARIVTGSTLAGARRV 326 H+K ++H + P PA+P L +I G + G + V Sbjct: 30 HKKKHKKKHHQEEEAGPTLQTPAKPQLKLKIKLGGQVLGTKSV 72
>RAD5_USTMA (Q4PGG5) DNA repair protein RAD5 (EC 3.6.1.-)| Length = 1387 Score = 27.3 bits (59), Expect = 9.0 Identities = 14/40 (35%), Positives = 18/40 (45%) Frame = +2 Query: 149 KKSWFVPMHVQNYQTTPSKTRRPPEPRSQAQGSLRRRPGT 268 KKSW P V ++ P P+PR + RR GT Sbjct: 192 KKSWSTPASVATTKSAPRHCSPTPDPRLRHDAFDRRYIGT 231
>NRG2_HUMAN (O14511) Pro-neuregulin-2, membrane-bound isoform precursor| (Pro-NRG2) [Contains: Neuregulin-2 (NRG-2) (Neural- and thymus-derived activator for ERBB kinases) (NTAK) (Divergent of neuregulin-1) (DON-1)] Length = 850 Score = 27.3 bits (59), Expect = 9.0 Identities = 13/33 (39%), Positives = 18/33 (54%) Frame = +2 Query: 185 YQTTPSKTRRPPEPRSQAQGSLRRRPGTTNSWR 283 Y+TT + PP PR +A+G+ RR WR Sbjct: 713 YETT-QECAPPPPPRPRARGASRRTSAGPRRWR 744
>HMPB_DROME (P31264) Homeotic protein proboscipedia| Length = 782 Score = 27.3 bits (59), Expect = 9.0 Identities = 10/18 (55%), Positives = 12/18 (66%) Frame = +3 Query: 195 HHQKPGDHQNHVAKHKAP 248 HHQ+ HQNHVA + P Sbjct: 571 HHQQQQHHQNHVADFEGP 588 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 48,634,644 Number of Sequences: 219361 Number of extensions: 989418 Number of successful extensions: 2945 Number of sequences better than 10.0: 28 Number of HSP's better than 10.0 without gapping: 2853 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2944 length of database: 80,573,946 effective HSP length: 106 effective length of database: 57,321,680 effective search space used: 1375720320 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
