ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbart23d05 |
|---|---|
| Clone Library Name | barley_pub |
>AGGF1_HUMAN (Q8N302) Angiogenic factor with G patch and FHA domains 1| (Angiogenic factor VG5Q) (Vasculogenesis gene on 5q) (hVG5Q) Length = 714 Score = 31.2 bits (69), Expect = 1.4 Identities = 22/74 (29%), Positives = 35/74 (47%), Gaps = 1/74 (1%) Frame = +1 Query: 88 YKLVSVPNRMLQGAQHEGYMF*TGDAQSRRR-RVENWRYPWGCYRLN*NFRFTSTYGCNS 264 Y VS+PN++ + + + T S+ +VEN YP N +R + NS Sbjct: 112 YNDVSLPNKVTELSDQQDQAIETSILNSKDHLQVENDAYPGTDRTENVKYRQVDHFASNS 171 Query: 265 RAPSSASCRLDTAL 306 + P+SA DT+L Sbjct: 172 QEPASALATEDTSL 185
>XERC_PSESX (Q8KRZ2) Putative tyrosine recombinase xerC| Length = 473 Score = 31.2 bits (69), Expect = 1.4 Identities = 26/97 (26%), Positives = 37/97 (38%), Gaps = 3/97 (3%) Frame = +2 Query: 146 CFKQETLRAEDVEWRXXXXXXXXXXXXXXSVSHLPMVATH--EHRQVLLAGWTRPCRTSG 319 C ET + +EWR SHL V + EH V L Sbjct: 41 CLACETTHRDMLEWRRSELARISKRSWNTYSSHLRTVYRYAMEHGLVEL---------KV 91 Query: 320 NP*TRTHALQQRQPEYTFQRDLLCSLKDWL-FLADEE 427 NP T + ++P+ T D++ ++WL FL EE Sbjct: 92 NPLKDTRVMPTKRPKKTIGNDVIVRARNWLRFLVQEE 128
>NPCL1_RAT (Q6T3U3) Niemann-Pick C1-like protein 1 precursor| Length = 1331 Score = 30.4 bits (67), Expect = 2.5 Identities = 15/30 (50%), Positives = 18/30 (60%) Frame = +1 Query: 271 PSSASCRLDTALSYIRKPMNQNSCPSTETT 360 PSS+ CRL YIR P CPST+T+ Sbjct: 963 PSSSCCRL-----YIRGPHKDEFCPSTDTS 987
>KEN_DROME (O77459) Probable transcription factor Ken (Protein Ken and Barbie)| Length = 601 Score = 29.6 bits (65), Expect = 4.2 Identities = 9/18 (50%), Positives = 12/18 (66%) Frame = +1 Query: 31 YHHHHHYNTGNAKNKNKH 84 +HHHHH+N N N N + Sbjct: 250 HHHHHHHNHNNNNNNNNN 267
>CAR2_DICDI (P34907) Cyclic AMP receptor 2 (cAMP receptor 2)| Length = 375 Score = 29.6 bits (65), Expect = 4.2 Identities = 9/19 (47%), Positives = 13/19 (68%) Frame = +1 Query: 31 YHHHHHYNTGNAKNKNKHV 87 +HHHHH+N N N N ++ Sbjct: 350 HHHHHHHNHYNNNNNNNNI 368
>VE10_VARV (P33821) Protein E10| Length = 95 Score = 29.6 bits (65), Expect = 4.2 Identities = 9/20 (45%), Positives = 15/20 (75%) Frame = -2 Query: 310 TTRPCPACKKHLTVLVSCNH 251 +T PCPAC++H T+ + N+ Sbjct: 39 STLPCPACRRHATIAIEDNN 58
>VE10_VACCV (P23373) Protein E10| Length = 95 Score = 29.6 bits (65), Expect = 4.2 Identities = 9/20 (45%), Positives = 15/20 (75%) Frame = -2 Query: 310 TTRPCPACKKHLTVLVSCNH 251 +T PCPAC++H T+ + N+ Sbjct: 39 STLPCPACRRHATIAIEDNN 58
>VE10_VACCC (P21050) Protein E10| Length = 95 Score = 29.6 bits (65), Expect = 4.2 Identities = 9/20 (45%), Positives = 15/20 (75%) Frame = -2 Query: 310 TTRPCPACKKHLTVLVSCNH 251 +T PCPAC++H T+ + N+ Sbjct: 39 STLPCPACRRHATIAIEDNN 58
>HUNB_DROAD (O46232) Protein hunchback (Fragments)| Length = 192 Score = 28.9 bits (63), Expect = 7.2 Identities = 8/20 (40%), Positives = 15/20 (75%) Frame = +1 Query: 25 PIYHHHHHYNTGNAKNKNKH 84 PI HHHHH++ +++ ++ H Sbjct: 14 PISHHHHHHHAHHSRRQHPH 33
>MAF_RAT (P54844) Transcription factor Maf (Proto-oncogene c-maf)| Length = 369 Score = 28.9 bits (63), Expect = 7.2 Identities = 9/13 (69%), Positives = 11/13 (84%) Frame = +1 Query: 25 PIYHHHHHYNTGN 63 P YHHHHH+ TG+ Sbjct: 179 PHYHHHHHHATGH 191
>HNF6_RAT (P70512) Hepatocyte nuclear factor 6 (HNF-6) (One cut domain family| member 1) Length = 465 Score = 28.9 bits (63), Expect = 7.2 Identities = 9/14 (64%), Positives = 12/14 (85%) Frame = +1 Query: 13 SDVFPIYHHHHHYN 54 SD FP +HHHHH++ Sbjct: 119 SDKFPHHHHHHHHH 132
>HNF6_MOUSE (O08755) Hepatocyte nuclear factor 6 (HNF-6) (One cut domain family| member 1) Length = 465 Score = 28.9 bits (63), Expect = 7.2 Identities = 9/14 (64%), Positives = 12/14 (85%) Frame = +1 Query: 13 SDVFPIYHHHHHYN 54 SD FP +HHHHH++ Sbjct: 119 SDKFPHHHHHHHHH 132
>HNF6_HUMAN (Q9UBC0) Hepatocyte nuclear factor 6 (HNF-6) (One cut domain family| member 1) Length = 465 Score = 28.9 bits (63), Expect = 7.2 Identities = 9/14 (64%), Positives = 12/14 (85%) Frame = +1 Query: 13 SDVFPIYHHHHHYN 54 SD FP +HHHHH++ Sbjct: 119 SDKFPHHHHHHHHH 132
>HUNB_DROIK (O46242) Protein hunchback (Fragments)| Length = 193 Score = 28.5 bits (62), Expect = 9.4 Identities = 8/20 (40%), Positives = 15/20 (75%) Frame = +1 Query: 25 PIYHHHHHYNTGNAKNKNKH 84 PI HHHHH++ ++ +++ H Sbjct: 14 PISHHHHHHHAHHSHHQHSH 33
>YG4U_YEAST (P53308) Hypothetical 11.9 kDa protein in DIE2-SMI1 intergenic| region Length = 114 Score = 28.5 bits (62), Expect = 9.4 Identities = 19/58 (32%), Positives = 30/58 (51%), Gaps = 4/58 (6%) Frame = +1 Query: 238 FTSTYGCNSRAPSSASCRLDTALSYIRKPMNQNSCPSTETT*IYFSAG----FTLLTE 399 F+ST+GC S + S SC + T + I + ++CP + SA FT+LT+ Sbjct: 60 FSSTFGCFSSSFLSLSCLMSTLSALI----SCSACPRLSVFTVVVSASLGSVFTILTD 113
>TRMU_BACHK (Q6HDD0) Probable tRNA| (5-methylaminomethyl-2-thiouridylate)-methyltransferase (EC 2.1.1.61) Length = 371 Score = 28.5 bits (62), Expect = 9.4 Identities = 10/22 (45%), Positives = 16/22 (72%) Frame = -2 Query: 181 DVFCSERLLFKTYILHAVPLGA 116 DV C++ + FK ++ HA+ LGA Sbjct: 101 DVMCNKEIKFKAFLEHAIALGA 122
>TRMU_BACCZ (Q634E9) Probable tRNA| (5-methylaminomethyl-2-thiouridylate)-methyltransferase (EC 2.1.1.61) Length = 371 Score = 28.5 bits (62), Expect = 9.4 Identities = 10/22 (45%), Positives = 16/22 (72%) Frame = -2 Query: 181 DVFCSERLLFKTYILHAVPLGA 116 DV C++ + FK ++ HA+ LGA Sbjct: 101 DVMCNKEIKFKAFLEHAIALGA 122
>TRMU_BACCR (Q812R6) Probable tRNA| (5-methylaminomethyl-2-thiouridylate)-methyltransferase (EC 2.1.1.61) Length = 371 Score = 28.5 bits (62), Expect = 9.4 Identities = 10/22 (45%), Positives = 16/22 (72%) Frame = -2 Query: 181 DVFCSERLLFKTYILHAVPLGA 116 DV C++ + FK ++ HA+ LGA Sbjct: 101 DVMCNKEIKFKAFLEHAIALGA 122
>TRMU_BACC1 (Q730D7) Probable tRNA| (5-methylaminomethyl-2-thiouridylate)-methyltransferase (EC 2.1.1.61) Length = 371 Score = 28.5 bits (62), Expect = 9.4 Identities = 10/22 (45%), Positives = 16/22 (72%) Frame = -2 Query: 181 DVFCSERLLFKTYILHAVPLGA 116 DV C++ + FK ++ HA+ LGA Sbjct: 101 DVMCNKEIKFKAFLEHAIALGA 122
>TRMU_BACAN (Q81JE5) Probable tRNA| (5-methylaminomethyl-2-thiouridylate)-methyltransferase (EC 2.1.1.61) Length = 371 Score = 28.5 bits (62), Expect = 9.4 Identities = 10/22 (45%), Positives = 16/22 (72%) Frame = -2 Query: 181 DVFCSERLLFKTYILHAVPLGA 116 DV C++ + FK ++ HA+ LGA Sbjct: 101 DVMCNKEIKFKAFLEHAIALGA 122 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 66,283,797 Number of Sequences: 219361 Number of extensions: 1300249 Number of successful extensions: 5252 Number of sequences better than 10.0: 20 Number of HSP's better than 10.0 without gapping: 4029 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 4748 length of database: 80,573,946 effective HSP length: 103 effective length of database: 57,979,763 effective search space used: 3188886965 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
