ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbart23d05
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|AY109890.1| Zea mays CL59593_1 mRNA sequence 190 3e-45
2dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic D... 182 7e-43
3dbj|AP005425.3| Oryza sativa (japonica cultivar-group) genomic D... 182 7e-43
4dbj|AK058667.1| Oryza sativa (japonica cultivar-group) cDNA clon... 182 7e-43
5dbj|AP006716.1| Staphylococcus haemolyticus JCSC1435 DNA, comple... 48 0.026
6gb|AY108960.1| Zea mays PCO105999 mRNA sequence 48 0.026
7gb|AC172879.1| Brassica rapa subsp. pekinensis clone KBrH070I10,... 48 0.026
8gb|BT018477.1| Zea mays clone EL01N0423H08.d mRNA sequence 44 0.41
9emb|AL022722.1|HS354N19 Human DNA sequence from clone RP3-354N19... 44 0.41
10gb|AC107761.9| Mus musculus chromosome 7, clone RP23-184M3, comp... 42 1.6
11emb|AL157705.18| Human DNA sequence from clone RP11-148C9 on chr... 42 1.6
12dbj|AP008983.1| Bacteriophage c-st DNA, complete genome 42 1.6
13gb|AC158124.6| Mus musculus chromosome 7, clone RP24-71O4, compl... 42 1.6
14gb|AC073964.3|AC073964 Homo sapiens chromosome 15 clone RP11-394... 42 1.6
15gb|AY109749.1| Zea mays CL65073_1 mRNA sequence 42 1.6
16emb|AL117259.6|CNS01DRJ Human chromosome 14 DNA sequence BAC R-3... 42 1.6
17emb|AL132708.3|CNS01DTA Human chromosome 14 DNA sequence BAC R-3... 42 1.6
18gb|K02212.1|HUMA1ATP Human alpha-1-antitrypsin gene (S variant),... 42 1.6
19ref|NM_120176.1| Arabidopsis thaliana unknown protein AT4G40100 ... 40 6.4
20ref|NM_187664.1| Oryza sativa (japonica cultivar-group), predic... 40 6.4
21gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 40 6.4
22gb|AY491941.1| Trichinella spiralis newborn larvae-specific seri... 40 6.4
23emb|Z12169.1|ATYPATT1 A.thaliana telomere associated sequence DNA 40 6.4
24gb|AC123940.4| Mus musculus BAC clone RP23-440M11 from chromosom... 40 6.4
25ref|XM_780091.1| PREDICTED: Strongylocentrotus purpuratus simila... 40 6.4
26emb|AL161596.2|ATCHRIV92 Arabidopsis thaliana DNA chromosome 4, ... 40 6.4
27gb|AC079174.20| Homo sapiens 12 BAC RP11-651L5 (Roswell Park Can... 40 6.4
28gb|AC117532.2| Homo sapiens chromosome 5 clone RP11-648M2, compl... 40 6.4
29emb|BX571698.15| Zebrafish DNA sequence from clone DKEYP-121E10 ... 40 6.4
30dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 40 6.4
31gb|AC009558.14|AC009558 Homo sapiens chromosome 15, clone RP11-1... 40 6.4
32gb|AF331160.1|AF331160 Trichinella spiralis newborn larvae-speci... 40 6.4
33gb|AC012050.7|AC012050 Homo sapiens chromosome 15 clone RP11-552... 40 6.4
34ref|NM_145722.1| Rattus norvegicus Bartomin (LOC252831), mRNA 40 6.4
35dbj|AK068057.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 6.4
36gb|AE001437.1| Clostridium acetobutylicum ATCC 824, complete genome 40 6.4
37emb|BX928749.12| Zebrafish DNA sequence from clone CH211-201A8 i... 40 6.4
38emb|AL137128.4|CNS01DWD Human chromosome 14 DNA sequence BAC R-9... 40 6.4
39emb|AL049838.3|CNS0000C Human chromosome 14 DNA sequence BAC R-9... 40 6.4
40gb|AC149586.6| Mus musculus BAC clone RP24-510C9 from 12, comple... 40 6.4
41emb|AL163011.3|CNS01RI8 Human chromosome 14 DNA sequence BAC C-2... 40 6.4
42emb|AL355792.8| Human DNA sequence from clone RP5-1123F10 on chr... 40 6.4
43gb|AC121489.2| Oryza sativa (japonica cultivar-group) chromosome... 40 6.4
44dbj|AB077475.1| Rattus norvegicus mRNA for barmotin, complete cds 40 6.4 
>gb|AY109890.1| Zea mays CL59593_1 mRNA sequence
          Length = 1044

 Score =  190 bits (96), Expect = 3e-45
 Identities = 167/188 (88%), Gaps = 2/188 (1%)
 Strand = Plus / Plus

                                                                       
Query: 253 ggttgcaactcacgagcacc-gtcaagtgcttcttgcaggctggacacggccttgtcgta 311
           |||||||||||||||||||  | |||| |||||||| || ||||   | |||||||||||
Sbjct: 223 ggttgcaactcacgagcactagccaag-gcttcttgaagactggctgcagccttgtcgta 281

                                                                       
Query: 312 catcaggaaacccatgaaccagaactcatgcccttcaacagagacaacctgaatatactt 371
           ||| || |||||||||||||||||||||||||||||||| || || |||||||| |||||
Sbjct: 282 cattagaaaacccatgaaccagaactcatgcccttcaacggaaacgacctgaatgtactt 341

                                                                       
Query: 372 ttcagcgggatttactttgctcactgaaggattggctgttcttagctgatgaagaggaat 431
            |||||||||||||||||||| ||||||||||| |||| ||||||||| |||||||||||
Sbjct: 342 ctcagcgggatttactttgcttactgaaggattagctgctcttagctggtgaagaggaat 401

                   
Query: 432 gaccacct 439
           ||||||||
Sbjct: 402 gaccacct 409
to top
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete
               sequence
          Length = 30731886

 Score =  182 bits (92), Expect = 7e-43
 Identities = 143/160 (89%)
 Strand = Plus / Minus

                                                                           
Query: 280     gcttcttgcaggctggacacggccttgtcgtacatcaggaaacccatgaaccagaactca 339
               |||||||| |||||  ||||||| ||||| |||||||| |||||||||||||||||||| 
Sbjct: 6045844 gcttcttggaggctacacacggctttgtcatacatcagaaaacccatgaaccagaactcg 6045785

                                                                           
Query: 340     tgcccttcaacagagacaacctgaatatacttttcagcgggatttactttgctcactgaa 399
               || |||||||| || ||||||||||||||||||||||| || ||||||||||||||||||
Sbjct: 6045784 tggccttcaactgaaacaacctgaatatacttttcagcagggtttactttgctcactgaa 6045725

                                                       
Query: 400     ggattggctgttcttagctgatgaagaggaatgaccacct 439
               ||||| || | ||||||||| || ||||||||||||||||
Sbjct: 6045724 ggattagccgctcttagctggtgcagaggaatgaccacct 6045685



 Score = 63.9 bits (32), Expect = 4e-07
 Identities = 38/40 (95%)
 Strand = Plus / Minus

                                                       
Query: 437     ccttgtagtaactccattctgttttatttcctgctttgta 476
               ||||||||||||||||||| ||||||||||| ||||||||
Sbjct: 6045130 ccttgtagtaactccattcagttttatttccagctttgta 6045091
to top
>dbj|AP005425.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC
             clone:P0644A02
          Length = 144954

 Score =  182 bits (92), Expect = 7e-43
 Identities = 143/160 (89%)
 Strand = Plus / Minus

                                                                         
Query: 280   gcttcttgcaggctggacacggccttgtcgtacatcaggaaacccatgaaccagaactca 339
             |||||||| |||||  ||||||| ||||| |||||||| |||||||||||||||||||| 
Sbjct: 50343 gcttcttggaggctacacacggctttgtcatacatcagaaaacccatgaaccagaactcg 50284

                                                                         
Query: 340   tgcccttcaacagagacaacctgaatatacttttcagcgggatttactttgctcactgaa 399
             || |||||||| || ||||||||||||||||||||||| || ||||||||||||||||||
Sbjct: 50283 tggccttcaactgaaacaacctgaatatacttttcagcagggtttactttgctcactgaa 50224

                                                     
Query: 400   ggattggctgttcttagctgatgaagaggaatgaccacct 439
             ||||| || | ||||||||| || ||||||||||||||||
Sbjct: 50223 ggattagccgctcttagctggtgcagaggaatgaccacct 50184



 Score = 63.9 bits (32), Expect = 4e-07
 Identities = 38/40 (95%)
 Strand = Plus / Minus

                                                     
Query: 437   ccttgtagtaactccattctgttttatttcctgctttgta 476
             ||||||||||||||||||| ||||||||||| ||||||||
Sbjct: 49629 ccttgtagtaactccattcagttttatttccagctttgta 49590
to top
>dbj|AK058667.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-018-G11, full
           insert sequence
          Length = 1114

 Score =  182 bits (92), Expect = 7e-43
 Identities = 143/160 (89%)
 Strand = Plus / Minus

                                                                       
Query: 280 gcttcttgcaggctggacacggccttgtcgtacatcaggaaacccatgaaccagaactca 339
           |||||||| |||||  ||||||| ||||| |||||||| |||||||||||||||||||| 
Sbjct: 794 gcttcttggaggctacacacggctttgtcatacatcagaaaacccatgaaccagaactcg 735

                                                                       
Query: 340 tgcccttcaacagagacaacctgaatatacttttcagcgggatttactttgctcactgaa 399
           || |||||||| || ||||||||||||||||||||||| || ||||||||||||||||||
Sbjct: 734 tggccttcaactgaaacaacctgaatatacttttcagcagggtttactttgctcactgaa 675

                                                   
Query: 400 ggattggctgttcttagctgatgaagaggaatgaccacct 439
           ||||| || | ||||||||| || ||||||||||||||||
Sbjct: 674 ggattagccgctcttagctggtgcagaggaatgaccacct 635



 Score = 63.9 bits (32), Expect = 4e-07
 Identities = 38/40 (95%)
 Strand = Plus / Minus

                                                   
Query: 437 ccttgtagtaactccattctgttttatttcctgctttgta 476
           ||||||||||||||||||| ||||||||||| ||||||||
Sbjct: 81  ccttgtagtaactccattcagttttatttccagctttgta 42
to top
>dbj|AP006716.1| Staphylococcus haemolyticus JCSC1435 DNA, complete genome
          Length = 2685015

 Score = 48.1 bits (24), Expect = 0.026
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                       
Query: 60      gaacgcaaagaacaagaacaaaca 83
               ||||||||||||||||||||||||
Sbjct: 1010238 gaacgcaaagaacaagaacaaaca 1010261
to top
>gb|AY108960.1| Zea mays PCO105999 mRNA sequence
          Length = 1111

 Score = 48.1 bits (24), Expect = 0.026
 Identities = 30/32 (93%)
 Strand = Plus / Minus

                                           
Query: 430 atgaccaccttgtagtaactccattctgtttt 461
           ||||||||||||||||||||||| || |||||
Sbjct: 702 atgaccaccttgtagtaactccactcagtttt 671
to top
>gb|AC172879.1| Brassica rapa subsp. pekinensis clone KBrH070I10, complete sequence
          Length = 107205

 Score = 48.1 bits (24), Expect = 0.026
 Identities = 24/24 (100%)
 Strand = Plus / Minus

                                     
Query: 318   gaaacccatgaaccagaactcatg 341
             ||||||||||||||||||||||||
Sbjct: 13594 gaaacccatgaaccagaactcatg 13571
to top
>gb|BT018477.1| Zea mays clone EL01N0423H08.d mRNA sequence
          Length = 968

 Score = 44.1 bits (22), Expect = 0.41
 Identities = 34/38 (89%)
 Strand = Plus / Minus

                                                 
Query: 300 ggccttgtcgtacatcaggaaacccatgaaccagaact 337
           ||||||||||||  ||| ||| ||||||||||||||||
Sbjct: 690 ggccttgtcgtagttcacgaaccccatgaaccagaact 653
to top
>emb|AL022722.1|HS354N19 Human DNA sequence from clone RP3-354N19 on chromosome 6q22 Contains
             the 3' end of the MAN1A1 gene for mannosidase alpha class
             1A member 1 (Man9-mannosidase) (MAN9 HUMM9), a Cytochrome
             C Oxidase Polypeptide I pseudogene and a pseudogene
             similar to 60S Ribosomal Protein L13A (RPL13), complete
             sequence
          Length = 139171

 Score = 44.1 bits (22), Expect = 0.41
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 455   ctgttttatttcctgctttgta 476
             ||||||||||||||||||||||
Sbjct: 86117 ctgttttatttcctgctttgta 86096
to top
>gb|AC107761.9| Mus musculus chromosome 7, clone RP23-184M3, complete sequence
          Length = 216757

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 71    acaagaacaaacacgtataca 91
             |||||||||||||||||||||
Sbjct: 44293 acaagaacaaacacgtataca 44313
to top
>emb|AL157705.18| Human DNA sequence from clone RP11-148C9 on chromosome 10 Contains part
             of the gene for SEC15 (S. cerevisiae)-like (SEC15L) and
             one CpG island, complete sequence
          Length = 76763

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 451   cattctgttttatttcctgct 471
             |||||||||||||||||||||
Sbjct: 42856 cattctgttttatttcctgct 42876
to top
>dbj|AP008983.1| Bacteriophage c-st DNA, complete genome
          Length = 185683

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 134   atgaaggatatatgttttaaa 154
             |||||||||||||||||||||
Sbjct: 82948 atgaaggatatatgttttaaa 82968
to top
>gb|AC158124.6| Mus musculus chromosome 7, clone RP24-71O4, complete sequence
          Length = 156165

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 71    acaagaacaaacacgtataca 91
             |||||||||||||||||||||
Sbjct: 68781 acaagaacaaacacgtataca 68761
to top
>gb|AC073964.3|AC073964 Homo sapiens chromosome 15 clone RP11-394B5 map 15q21.2, complete
             sequence
          Length = 189796

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 65    caaagaacaagaacaaacacg 85
             |||||||||||||||||||||
Sbjct: 85062 caaagaacaagaacaaacacg 85042
to top
>gb|AY109749.1| Zea mays CL65073_1 mRNA sequence
          Length = 828

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 318 gaaacccatgaaccagaactc 338
           |||||||||||||||||||||
Sbjct: 799 gaaacccatgaaccagaactc 779
to top
>emb|AL117259.6|CNS01DRJ Human chromosome 14 DNA sequence BAC R-304M6 of library RPCI-11 from
             chromosome 14 of Homo sapiens (Human), complete sequence
          Length = 193301

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 202   ccctggggatgttacaggctg 222
             |||||||||||||||||||||
Sbjct: 10633 ccctggggatgttacaggctg 10653
to top
>emb|AL132708.3|CNS01DTA Human chromosome 14 DNA sequence BAC R-349I1 of library RPCI-11 from
              chromosome 14 of Homo sapiens (Human), complete sequence
          Length = 147505

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 202    ccctggggatgttacaggctg 222
              |||||||||||||||||||||
Sbjct: 136724 ccctggggatgttacaggctg 136744
to top
>gb|K02212.1|HUMA1ATP Human alpha-1-antitrypsin gene (S variant), complete cds
          Length = 12222

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 202   ccctggggatgttacaggctg 222
             |||||||||||||||||||||
Sbjct: 10621 ccctggggatgttacaggctg 10641
to top
>ref|NM_120176.1| Arabidopsis thaliana unknown protein AT4G40100 mRNA, complete cds
          Length = 678

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 318 gaaacccatgaaccagaactcatg 341
           ||||||||||||||| ||||||||
Sbjct: 606 gaaacccatgaaccaaaactcatg 583
to top
>ref|NM_187664.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 795

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 322 cccatgaaccagaactcatg 341
           ||||||||||||||||||||
Sbjct: 722 cccatgaaccagaactcatg 703
to top
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 322     cccatgaaccagaactcatg 341
               ||||||||||||||||||||
Sbjct: 4576207 cccatgaaccagaactcatg 4576188
to top
>gb|AY491941.1| Trichinella spiralis newborn larvae-specific serine protease SS2-1
            mRNA, complete cds
          Length = 1600

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 439  ttgtagtaactccattctgt 458
            ||||||||||||||||||||
Sbjct: 1499 ttgtagtaactccattctgt 1480
to top
>emb|Z12169.1|ATYPATT1 A.thaliana telomere associated sequence DNA
          Length = 503

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 318 gaaacccatgaaccagaactcatg 341
           ||||||||||||||| ||||||||
Sbjct: 62  gaaacccatgaaccaaaactcatg 39
to top
>gb|AC123940.4| Mus musculus BAC clone RP23-440M11 from chromosome 12, complete sequence
          Length = 197665

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 447    actccattctgttttatttc 466
              ||||||||||||||||||||
Sbjct: 167230 actccattctgttttatttc 167249
to top
>ref|XM_780091.1| PREDICTED: Strongylocentrotus purpuratus similar to talin 1
           (LOC580010), mRNA
          Length = 7836

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 407 ctgttcttagctgatgaaga 426
           ||||||||||||||||||||
Sbjct: 157 ctgttcttagctgatgaaga 176
to top
>emb|AL161596.2|ATCHRIV92 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 92
          Length = 112067

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 318    gaaacccatgaaccagaactcatg 341
              ||||||||||||||| ||||||||
Sbjct: 111463 gaaacccatgaaccaaaactcatg 111440
to top
>gb|AC079174.20| Homo sapiens 12 BAC RP11-651L5 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 87817

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 215   acaggctgaactgaaacttc 234
             ||||||||||||||||||||
Sbjct: 9999  acaggctgaactgaaacttc 10018
to top
>gb|AC117532.2| Homo sapiens chromosome 5 clone RP11-648M2, complete sequence
          Length = 177782

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 449   tccattctgttttatttcct 468
             ||||||||||||||||||||
Sbjct: 54629 tccattctgttttatttcct 54610
to top
>emb|BX571698.15| Zebrafish DNA sequence from clone DKEYP-121E10 in linkage group 24,
             complete sequence
          Length = 168886

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 65    caaagaacaagaacaaacac 84
             ||||||||||||||||||||
Sbjct: 49913 caaagaacaagaacaaacac 49894
to top
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
               sequence
          Length = 36192742

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 322     cccatgaaccagaactcatg 341
               ||||||||||||||||||||
Sbjct: 4576322 cccatgaaccagaactcatg 4576303
to top
>gb|AC009558.14|AC009558 Homo sapiens chromosome 15, clone RP11-142J21, complete sequence
          Length = 184568

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 448    ctccattctgttttatttcc 467
              ||||||||||||||||||||
Sbjct: 145260 ctccattctgttttatttcc 145241
to top
>gb|AF331160.1|AF331160 Trichinella spiralis newborn larvae-specific serine protease SS2
            mRNA, complete cds
          Length = 1609

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 439  ttgtagtaactccattctgt 458
            ||||||||||||||||||||
Sbjct: 1461 ttgtagtaactccattctgt 1442
to top
>gb|AC012050.7|AC012050 Homo sapiens chromosome 15 clone RP11-552E10 map 15q21.1, complete
             sequence
          Length = 191286

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 448   ctccattctgttttatttcc 467
             ||||||||||||||||||||
Sbjct: 31793 ctccattctgttttatttcc 31774
to top
>ref|NM_145722.1| Rattus norvegicus Bartomin (LOC252831), mRNA
          Length = 5352

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 334 aactcatgcccttcaacagagaca 357
           ||||||||||| ||||||||||||
Sbjct: 584 aactcatgcccatcaacagagaca 561
to top
>dbj|AK068057.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013130C18, full
           insert sequence
          Length = 1136

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 322 cccatgaaccagaactcatg 341
           ||||||||||||||||||||
Sbjct: 873 cccatgaaccagaactcatg 854
to top
>gb|AE001437.1| Clostridium acetobutylicum ATCC 824, complete genome
          Length = 3940880

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 61      aacgcaaagaacaagaacaa 80
               ||||||||||||||||||||
Sbjct: 3184543 aacgcaaagaacaagaacaa 3184524
to top
>emb|BX928749.12| Zebrafish DNA sequence from clone CH211-201A8 in linkage group 2,
             complete sequence
          Length = 215263

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 159   agacgctcagagcagaagac 178
             ||||||||||||||||||||
Sbjct: 16029 agacgctcagagcagaagac 16048
to top
>emb|AL137128.4|CNS01DWD Human chromosome 14 DNA sequence BAC R-951P22 of library RPCI-11 from
             chromosome 14 of Homo sapiens (Human), complete sequence
          Length = 228652

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 453   ttctgttttatttcctgctttgta 476
             |||||||||||||||| |||||||
Sbjct: 18787 ttctgttttatttccttctttgta 18764
to top
>emb|AL049838.3|CNS0000C Human chromosome 14 DNA sequence BAC R-999E24 of library RPCI-11 from
             chromosome 14 of Homo sapiens (Human), complete sequence
          Length = 211723

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 379   ggatttactttgctcactga 398
             ||||||||||||||||||||
Sbjct: 70157 ggatttactttgctcactga 70176
to top
>gb|AC149586.6| Mus musculus BAC clone RP24-510C9 from 12, complete sequence
          Length = 198641

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 447   actccattctgttttatttc 466
             ||||||||||||||||||||
Sbjct: 66318 actccattctgttttatttc 66337
to top
>emb|AL163011.3|CNS01RI8 Human chromosome 14 DNA sequence BAC C-2324M15 of library CalTech-D
            from chromosome 14 of Homo sapiens (Human), complete
            sequence
          Length = 100791

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 453  ttctgttttatttcctgctttgta 476
            |||||||||||||||| |||||||
Sbjct: 2306 ttctgttttatttccttctttgta 2329
to top
>emb|AL355792.8| Human DNA sequence from clone RP5-1123F10 on chromosome 11 Contains
             STSs and GSSs, complete sequence
          Length = 130116

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 379   ggatttactttgctcactga 398
             ||||||||||||||||||||
Sbjct: 82670 ggatttactttgctcactga 82651
to top
>gb|AC121489.2| Oryza sativa (japonica cultivar-group) chromosome 3 clone OJ1217B09,
             complete sequence
          Length = 148894

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 322   cccatgaaccagaactcatg 341
             ||||||||||||||||||||
Sbjct: 17162 cccatgaaccagaactcatg 17143
to top
>dbj|AB077475.1| Rattus norvegicus mRNA for barmotin, complete cds
          Length = 5352

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 334 aactcatgcccttcaacagagaca 357
           ||||||||||| ||||||||||||
Sbjct: 584 aactcatgcccatcaacagagaca 561


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4,107,206
Number of Sequences: 3902068
Number of extensions: 4107206
Number of successful extensions: 88273
Number of sequences better than 10.0: 44
Number of HSP's better than 10.0 without gapping: 44
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 88124
Number of HSP's gapped (non-prelim): 149
length of query: 476
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 454
effective length of database: 17,147,199,772
effective search space: 7784828696488
effective search space used: 7784828696488
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
to top