ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbart23d04
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1KPRS4_ORYSA (Q6ZFT5) Ribose-phosphate pyrophosphokinase 4 (EC 2.... 107 1e-23
2KPRS4_ARATH (Q680A5) Ribose-phosphate pyrophosphokinase 4 (EC 2.... 83 4e-16
3KPRS4_SPIOL (Q9XGA1) Ribose-phosphate pyrophosphokinase 4 (EC 2.... 81 1e-15
4KPRS3_SPIOL (Q9XGA0) Ribose-phosphate pyrophosphokinase 3, mitoc... 80 4e-15
5KPRS3_ORYSA (Q8S2E5) Ribose-phosphate pyrophosphokinase 3 (EC 2.... 80 4e-15
6KPRS3_ARATH (Q93Z66) Ribose-phosphate pyrophosphokinase 3 (EC 2.... 79 9e-15
7KPRS_MYCGE (P47304) Ribose-phosphate pyrophosphokinase (EC 2.7.6... 29 6.0
8TM7S4_HUMAN (Q9H295) Transmembrane 7 superfamily member 4 (Dendr... 29 7.8

>KPRS4_ORYSA (Q6ZFT5) Ribose-phosphate pyrophosphokinase 4 (EC 2.7.6.1)|
           (Phosphoribosyl pyrophosphate synthetase 4)
          Length = 325

 Score =  107 bits (268), Expect = 1e-23
 Identities = 52/62 (83%), Positives = 54/62 (87%)
 Frame = -1

Query: 491 THAVFPNQSYERFMTANSAEPGDQFAYFWITDSCPQTVKAISQQPPFEVLSLASSIADAL 312
           THAVFP QSYERF   NSA   D+FAYFWITDSCPQTVKAI+QQPPFEVLSLA SIADAL
Sbjct: 264 THAVFPKQSYERFTHTNSAGSADKFAYFWITDSCPQTVKAINQQPPFEVLSLAGSIADAL 323

Query: 311 QI 306
           QI
Sbjct: 324 QI 325



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>KPRS4_ARATH (Q680A5) Ribose-phosphate pyrophosphokinase 4 (EC 2.7.6.1)|
           (Phosphoribosyl pyrophosphate synthetase 4)
          Length = 337

 Score = 83.2 bits (204), Expect = 4e-16
 Identities = 44/63 (69%), Positives = 47/63 (74%), Gaps = 1/63 (1%)
 Frame = -1

Query: 491 THAVFPNQSYERFM-TANSAEPGDQFAYFWITDSCPQTVKAISQQPPFEVLSLASSIADA 315
           TH VFP  S+ERF    N  E  + FAYFWITDSCPQTVKAI  + PFEVLSLA SIADA
Sbjct: 277 THGVFPKSSWERFTHKKNGLE--EAFAYFWITDSCPQTVKAIGNKAPFEVLSLAGSIADA 334

Query: 314 LQI 306
           LQI
Sbjct: 335 LQI 337



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>KPRS4_SPIOL (Q9XGA1) Ribose-phosphate pyrophosphokinase 4 (EC 2.7.6.1)|
           (Phosphoribosyl pyrophosphate synthetase 4)
          Length = 318

 Score = 81.3 bits (199), Expect = 1e-15
 Identities = 41/62 (66%), Positives = 46/62 (74%)
 Frame = -1

Query: 491 THAVFPNQSYERFMTANSAEPGDQFAYFWITDSCPQTVKAISQQPPFEVLSLASSIADAL 312
           THAVFP  S+ERF T         F YFWITDSCP+TVK+I+ + PFEVLSLA SIADAL
Sbjct: 258 THAVFPKNSFERF-THKDDGSDKAFTYFWITDSCPRTVKSIANKAPFEVLSLAGSIADAL 316

Query: 311 QI 306
           QI
Sbjct: 317 QI 318



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>KPRS3_SPIOL (Q9XGA0) Ribose-phosphate pyrophosphokinase 3, mitochondrial|
           precursor (EC 2.7.6.1) (Phosphoribosyl pyrophosphate
           synthetase 3)
          Length = 406

 Score = 79.7 bits (195), Expect = 4e-15
 Identities = 36/62 (58%), Positives = 45/62 (72%)
 Frame = -1

Query: 491 THAVFPNQSYERFMTANSAEPGDQFAYFWITDSCPQTVKAISQQPPFEVLSLASSIADAL 312
           TH +FPN+S+ERF    +  P +   +FWITDSCP TVK +  +PPFEV+SLA SIA AL
Sbjct: 345 THGIFPNKSWERFKPDTAGCPEEGMTHFWITDSCPLTVKMVKNRPPFEVISLAGSIAAAL 404

Query: 311 QI 306
           QI
Sbjct: 405 QI 406



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>KPRS3_ORYSA (Q8S2E5) Ribose-phosphate pyrophosphokinase 3 (EC 2.7.6.1)|
           (Phosphoribosyl pyrophosphate synthetase 3)
          Length = 409

 Score = 79.7 bits (195), Expect = 4e-15
 Identities = 35/62 (56%), Positives = 44/62 (70%)
 Frame = -1

Query: 491 THAVFPNQSYERFMTANSAEPGDQFAYFWITDSCPQTVKAISQQPPFEVLSLASSIADAL 312
           TH +FPN+S+E+F   N   PG   ++FWITDSCP TV A+  + PFE+LSLA  IA AL
Sbjct: 348 THGIFPNKSWEKFQPDNGEGPGHGLSHFWITDSCPLTVNAVKDRQPFEILSLAGPIASAL 407

Query: 311 QI 306
           QI
Sbjct: 408 QI 409



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>KPRS3_ARATH (Q93Z66) Ribose-phosphate pyrophosphokinase 3 (EC 2.7.6.1)|
           (Phosphoribosyl pyrophosphate synthetase 3)
          Length = 411

 Score = 78.6 bits (192), Expect = 9e-15
 Identities = 34/62 (54%), Positives = 43/62 (69%)
 Frame = -1

Query: 491 THAVFPNQSYERFMTANSAEPGDQFAYFWITDSCPQTVKAISQQPPFEVLSLASSIADAL 312
           TH +FP  S++RF      +P +  +YFWITDSC  TVK +  +PPFEVLSLA SIA AL
Sbjct: 350 THGIFPRSSWKRFKLDTKGDPAEGLSYFWITDSCGMTVKEVMNKPPFEVLSLAGSIASAL 409

Query: 311 QI 306
           Q+
Sbjct: 410 QV 411



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>KPRS_MYCGE (P47304) Ribose-phosphate pyrophosphokinase (EC 2.7.6.1) (RPPK)|
           (Phosphoribosyl pyrophosphate synthetase) (P-Rib-PP
           synthetase) (PRPP synthetase)
          Length = 344

 Score = 29.3 bits (64), Expect = 6.0
 Identities = 20/55 (36%), Positives = 32/55 (58%), Gaps = 1/55 (1%)
 Frame = -1

Query: 491 THAVFPNQSYERFMTANSAEPGDQFAYFWITDSCPQ-TVKAISQQPPFEVLSLAS 330
           TH +F N + ++FM A   +  D   + ++++S PQ   KA+ Q   FEV+ LAS
Sbjct: 266 THGLFNNDAEQKFMEAFDQKLID---FLFVSNSIPQYKFKAVKQ---FEVVDLAS 314



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>TM7S4_HUMAN (Q9H295) Transmembrane 7 superfamily member 4 (Dendritic|
           cell-specific transmembrane protein) (DC-STAMP)
           (IL-4-induced protein) (FIND)
          Length = 470

 Score = 28.9 bits (63), Expect = 7.8
 Identities = 12/26 (46%), Positives = 15/26 (57%)
 Frame = -3

Query: 150 WIFTCTVLCIRF*CSRPGRCFNFLTW 73
           WI TC +LC    CS+  RCF  L +
Sbjct: 65  WIITCVLLC----CSKHARCFILLVF 86


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 67,926,730
Number of Sequences: 219361
Number of extensions: 1273923
Number of successful extensions: 2800
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 2750
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2797
length of database: 80,573,946
effective HSP length: 103
effective length of database: 57,979,763
effective search space used: 3478785780
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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