>PSDE_ARATH (Q9LT08) 26S proteasome non-ATPase regulatory subunit 14 (26S|
           proteasome regulatory subunit rpn11)
          Length = 308

 Score =  160 bits (404), Expect = 2e-39
 Identities = 83/105 (79%), Positives = 86/105 (81%)
 Frame = -2

Query: 469 YSIAINYRXXXXXXXXXXXXXXXKWTDGLILKKFDAHSETNEQTVQEMLSLAIKYNKAVQ 290
           YSIAINYR               KWTDGL L++FD HS+TNEQTVQEMLSLA KYNKAVQ
Sbjct: 200 YSIAINYRKNELEEKMLLNLHKKKWTDGLTLRRFDTHSKTNEQTVQEMLSLAAKYNKAVQ 259

Query: 289 EEDELSPEKLAIANVGRQDAKKHLEEHVSNLMSSNIVQTLGTMLD 155
           EEDELSPEKLAI NVGRQDAKKHLEEHVSNLMSSNIVQTLGTMLD
Sbjct: 260 EEDELSPEKLAIVNVGRQDAKKHLEEHVSNLMSSNIVQTLGTMLD 304

>PSDE_MOUSE (O35593) 26S proteasome non-ATPase regulatory subunit 14 (26S|
           proteasome regulatory subunit rpn11) (MAD1)
          Length = 310

 Score =  112 bits (279), Expect = 6e-25
 Identities = 56/105 (53%), Positives = 69/105 (65%)
 Frame = -2

Query: 469 YSIAINYRXXXXXXXXXXXXXXXKWTDGLILKKFDAHSETNEQTVQEMLSLAIKYNKAVQ 290
           YSI INYR                W +GL L+ +  H + NE  V+EML LA  YNKAV+
Sbjct: 201 YSITINYRKNELEQKMLLNLHKKSWMEGLTLQDYSEHCKHNESVVKEMLELAKNYNKAVE 260

Query: 289 EEDELSPEKLAIANVGRQDAKKHLEEHVSNLMSSNIVQTLGTMLD 155
           EED+++PE+LAI NVG+QD K+HLEEHV  LM+SNIVQ L  MLD
Sbjct: 261 EEDKMTPEQLAIKNVGKQDPKRHLEEHVDVLMTSNIVQCLAAMLD 305

>PSDE_HUMAN (O00487) 26S proteasome non-ATPase regulatory subunit 14 (26S|
           proteasome regulatory subunit rpn11) (26S
           proteasome-associated PAD1 homolog 1)
          Length = 310

 Score =  112 bits (279), Expect = 6e-25
 Identities = 56/105 (53%), Positives = 69/105 (65%)
 Frame = -2

Query: 469 YSIAINYRXXXXXXXXXXXXXXXKWTDGLILKKFDAHSETNEQTVQEMLSLAIKYNKAVQ 290
           YSI INYR                W +GL L+ +  H + NE  V+EML LA  YNKAV+
Sbjct: 201 YSITINYRKNELEQKMLLNLHKKSWMEGLTLQDYSEHCKHNESVVKEMLELAKNYNKAVE 260

Query: 289 EEDELSPEKLAIANVGRQDAKKHLEEHVSNLMSSNIVQTLGTMLD 155
           EED+++PE+LAI NVG+QD K+HLEEHV  LM+SNIVQ L  MLD
Sbjct: 261 EEDKMTPEQLAIKNVGKQDPKRHLEEHVDVLMTSNIVQCLAAMLD 305

>PSDE_DROME (Q9V3H2) 26S proteasome non-ATPase regulatory subunit 14 (26S|
           proteasome regulatory subunit rpn11) (26S proteasome
           regulatory complex subunit p37B) (Yippee-interacting
           protein 5)
          Length = 308

 Score =  107 bits (267), Expect = 2e-23
 Identities = 52/105 (49%), Positives = 68/105 (64%)
 Frame = -2

Query: 469 YSIAINYRXXXXXXXXXXXXXXXKWTDGLILKKFDAHSETNEQTVQEMLSLAIKYNKAVQ 290
           YSI+INYR                W DGL L  ++ H   NE TV EML LA  YNK+++
Sbjct: 199 YSISINYRKNELEQKMLLNLHKKSWKDGLTLSDYNEHCSINEDTVAEMLDLAKNYNKSLE 258

Query: 289 EEDELSPEKLAIANVGRQDAKKHLEEHVSNLMSSNIVQTLGTMLD 155
           +E++++PE+LAI NVG+QD K+HLEE V  +M +NIVQ LG MLD
Sbjct: 259 DEEKMTPEQLAIKNVGKQDPKRHLEEKVDKVMQNNIVQCLGAMLD 303

>RPN11_SCHPO (P41878) 26S proteasome regulatory subunit rpn11 (Protein pad1)|
          Length = 308

 Score = 77.8 bits (190), Expect = 1e-14
 Identities = 40/105 (38%), Positives = 58/105 (55%)
 Frame = -2

Query: 469 YSIAINYRXXXXXXXXXXXXXXXKWTDGLILKKFDAHSETNEQTVQEMLSLAIKYNKAVQ 290
           YS+ INY+                W  GL+L+ F++ +E N  ++ +M SL+ +Y + VQ
Sbjct: 200 YSLRINYKKTELEEIMLLNLHKQPWAHGLLLENFNSAAEKNHASIDKMKSLSEQYTERVQ 259

Query: 289 EEDELSPEKLAIANVGRQDAKKHLEEHVSNLMSSNIVQTLGTMLD 155
            E  LSPE+L I  VG+QD KKHL+  V   + +NI   L  MLD
Sbjct: 260 NEVTLSPEQLRIQYVGKQDPKKHLDAEVQKCIDNNISSMLACMLD 304

>PSDE_CAEEL (O76577) 26S proteasome non-ATPase regulatory subunit 14 (26S|
           proteasome regulatory subunit rpn11)
          Length = 312

 Score = 73.9 bits (180), Expect = 2e-13
 Identities = 35/104 (33%), Positives = 59/104 (56%)
 Frame = -2

Query: 469 YSIAINYRXXXXXXXXXXXXXXXKWTDGLILKKFDAHSETNEQTVQEMLSLAIKYNKAVQ 290
           YSI I YR                W D + ++ +    E N++ ++ ML LA  Y KA++
Sbjct: 203 YSIPIAYRTHDLEQKMLLNLNKLSWMDAVSVENYSKCGEQNKEHLKAMLKLAKNYKKALE 262

Query: 289 EEDELSPEKLAIANVGRQDAKKHLEEHVSNLMSSNIVQTLGTML 158
           +E  ++ ++LAI NVG+ D K+H+ + VS +++ NIVQ+L  M+
Sbjct: 263 DEKNMTDQELAIKNVGKMDPKRHIADEVSKMLNDNIVQSLAGMM 306

>RPN11_YEAST (P43588) 26S proteasome regulatory subunit RPN11 (MPR1 protein)|
          Length = 306

 Score = 65.5 bits (158), Expect = 7e-11
 Identities = 33/100 (33%), Positives = 51/100 (51%)
 Frame = -2

Query: 469 YSIAINYRXXXXXXXXXXXXXXXKWTDGLILKKFDAHSETNEQTVQEMLSLAIKYNKAVQ 290
           YS+ I+Y                +W  GL +  ++   E+N    + M+ +A +Y+K ++
Sbjct: 197 YSLNIDYHKTAKETKMLMNLHKEQWQSGLKMYDYEEKEESNLAATKSMVKIAEQYSKRIE 256

Query: 289 EEDELSPEKLAIANVGRQDAKKHLEEHVSNLMSSNIVQTL 170
           EE EL+ E+L    VGRQD KKHL E     + +NIV  L
Sbjct: 257 EEKELTEEELKTRYVGRQDPKKHLSETADETLENNIVSVL 296

>RPN11_CANGA (Q6FKS1) 26S proteasome regulatory subunit RPN11|
          Length = 306

 Score = 61.6 bits (148), Expect = 1e-09
 Identities = 31/100 (31%), Positives = 50/100 (50%)
 Frame = -2

Query: 469 YSIAINYRXXXXXXXXXXXXXXXKWTDGLILKKFDAHSETNEQTVQEMLSLAIKYNKAVQ 290
           YS+ I+Y                +W  GL ++ +      N +  + M+++A +Y+K ++
Sbjct: 197 YSLNIDYHKTPAETKMLLNLHKEQWQSGLKMQDYQEKETENLEATKRMVAVAQQYSKRIE 256

Query: 289 EEDELSPEKLAIANVGRQDAKKHLEEHVSNLMSSNIVQTL 170
           EE ELS E+L    VG+QD KKHL +   N +  N V  L
Sbjct: 257 EEKELSEEELKTRYVGKQDPKKHLAKTAENTLEENTVSVL 296

>RPN11_ASHGO (Q750E9) 26S proteasome regulatory subunit RPN11|
          Length = 311

 Score = 58.5 bits (140), Expect = 8e-09
 Identities = 29/100 (29%), Positives = 48/100 (48%)
 Frame = -2

Query: 469 YSIAINYRXXXXXXXXXXXXXXXKWTDGLILKKFDAHSETNEQTVQEMLSLAIKYNKAVQ 290
           YS+ I+Y                +W  GL +  +      N +  ++ + +A +Y K ++
Sbjct: 202 YSLNIDYHKTSAELNMLMNLHKEQWQSGLKMHDYKEKERINLEATKKSVRIAEQYTKRIE 261

Query: 289 EEDELSPEKLAIANVGRQDAKKHLEEHVSNLMSSNIVQTL 170
           EE EL+ ++L    VG+QD KKHL E    ++  NIV  L
Sbjct: 262 EEKELTEDELKTRYVGKQDPKKHLSETAERVLEENIVSVL 301

>YPT5_CAEEL (P41883) Hypothetical protein F37A4.5 in chromosome III|
          Length = 319

 Score = 31.6 bits (70), Expect = 1.1
 Identities = 21/111 (18%), Positives = 45/111 (40%), Gaps = 6/111 (5%)
 Frame = -2

Query: 469 YSIAINYRXXXXXXXXXXXXXXXKWTDGLILKKFDAHSETNEQTVQEMLSLAIKYNKAVQ 290
           YS+ + YR                W D L +  +    +  E+  + +  L   +NK + 
Sbjct: 204 YSLNVAYRMGSNEQKMLMCLNKKSWYDQLNMSTYSELEKKQEEKFKSINKLIAVFNKDID 263

Query: 289 E------EDELSPEKLAIANVGRQDAKKHLEEHVSNLMSSNIVQTLGTMLD 155
           E       D+    +  +   G+ +AK+ L+   S+L++ ++   L  M++
Sbjct: 264 EVKEKPIADKKGKTQEEVKKFGKINAKQQLQMITSSLLNDSLCHQLTAMIN 314

>YFI2_YEAST (P43595) Hypothetical protein YFR012W precursor|
          Length = 202

 Score = 30.8 bits (68), Expect = 1.8
 Identities = 20/60 (33%), Positives = 28/60 (46%), Gaps = 3/60 (5%)
 Frame = -3

Query: 174 PWGPCLTRLSFSLPLV---LFQPSIDSPSLSFMLYVSKACLHAARYIRVLTVCSTDSIFC 4
           P   CLT +SF+LPLV   LFQ    +   +  L  S A LH    +  +  C+   + C
Sbjct: 99  PVATCLTFISFALPLVIIFLFQ----TGGTNVSLITSNAILHILTLLSTIFACTVILLLC 154

>RPOC2_GUITH (O78483) DNA-directed RNA polymerase beta'' chain (EC 2.7.7.6)|
           (PEP) (Plastid-encoded RNA polymerase beta'' subunit)
           (RNA polymerase beta'' subunit)
          Length = 1286

 Score = 30.0 bits (66), Expect = 3.1
 Identities = 13/27 (48%), Positives = 18/27 (66%)
 Frame = +2

Query: 92  DRLGESIDGWNNTSGRLKDNRVKHGPQ 172
           +R  + ID WNNTS +LKD  +K+  Q
Sbjct: 100 ERFQKVIDTWNNTSEQLKDEVIKYFKQ 126

>V70K_TYMVC (P28478) 69 kDa protein|
          Length = 628

 Score = 29.3 bits (64), Expect = 5.3
 Identities = 11/14 (78%), Positives = 13/14 (92%)
 Frame = -2

Query: 61 PRSKVHSGFNSLLD 20
          P S++HSGFNSLLD
Sbjct: 24 PNSRIHSGFNSLLD 37

>COG1_DROME (Q9VGC3) Putative conserved oligomeric Golgi complex component 1|
          Length = 886

 Score = 28.9 bits (63), Expect = 6.9
 Identities = 18/62 (29%), Positives = 34/62 (54%)
 Frame = -2

Query: 382 ILKKFDAHSETNEQTVQEMLSLAIKYNKAVQEEDELSPEKLAIANVGRQDAKKHLEEHVS 203
           + K+FD+H       VQE+       N  +QE+   + +K+++    R+ A++ L E++S
Sbjct: 475 LCKRFDSHLA---DIVQEL-------NVMLQEQTTRAEDKVSLIEFLRETAEEQLTEYLS 524

Query: 202 NL 197
           NL
Sbjct: 525 NL 526

>AEGP_RAT (Q63191) Apical endosomal glycoprotein precursor|
          Length = 1216

 Score = 28.9 bits (63), Expect = 6.9
 Identities = 16/49 (32%), Positives = 26/49 (53%), Gaps = 1/49 (2%)
 Frame = +1

Query: 163 WSPGSELCSTTSNSRHALLDASSHLAVQ-H*LSLISQGTTHPPLALPCC 306
           W P  +  + T+   + ++D S +L  + H  SL S+   HPPL+ P C
Sbjct: 846 WGPWIDHTTGTAQGHYMVVDTSPNLLPKGHVASLTSE--EHPPLSRPAC 892

>RBP1_PLAVB (Q00798) Reticulocyte binding protein 1 precursor|
          Length = 2833

 Score = 28.9 bits (63), Expect = 6.9
 Identities = 17/58 (29%), Positives = 28/58 (48%)
 Frame = -2

Query: 388  GLILKKFDAHSETNEQTVQEMLSLAIKYNKAVQEEDELSPEKLAIANVGRQDAKKHLE 215
            G +L++     +   + V+EM SL  K  K +QE  + S  +L   ++      KHLE
Sbjct: 1246 GHVLERITVEKDKAGKVVEEMNSLKTKIEKLIQETSDDSQNELVTTSI-----TKHLE 1298

>V70K_TYMV (P10357) 69 kDa protein|
          Length = 628

 Score = 28.5 bits (62), Expect = 9.1
 Identities = 11/14 (78%), Positives = 13/14 (92%)
 Frame = -2

Query: 61 PRSKVHSGFNSLLD 20
          P S++HSGFNSLLD
Sbjct: 24 PDSRIHSGFNSLLD 37


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 60,659,729
Number of Sequences: 219361
Number of extensions: 1097692
Number of successful extensions: 2986
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 2913
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2985
length of database: 80,573,946
effective HSP length: 103
effective length of database: 57,979,763
effective search space used: 3072927439
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)