Clone Information

BLAST Search Result

Clone Name	rbart23d01
Clone Library Name	barley_pub

No.	Definition	Score (bits)	E Value
1	ZAP1_YEAST (P47043) Zinc-responsive transcriptional regulator ZAP1	34	0.073
2	PC_DROME (P26017) Polycomb group protein Pc (Protein polycomb)	32	0.47
3	OPA_DROME (P39768) Pair-rule protein odd-paired	32	0.47
4	CREA_GIBFU (O94131) DNA-binding protein creA (Carbon catabolite ...	32	0.47
5	KNOB_PLAFN (P06719) Knob-associated histidine-rich protein precu...	31	0.62
6	FRAS1_MOUSE (Q80T14) Extracellular matrix protein FRAS1 precursor	30	1.4
7	DYRK2_DROME (Q9V3D5) Dual specificity tyrosine-phosphorylation-r...	30	1.4
8	QIN_AVIS3 (P56260) Transforming protein Qin (Oncogene Qin)	30	1.8
9	FOXGB_CHICK (Q90964) Forkhead box protein G1B (Forkhead-related ...	30	1.8
10	CAC1A_RABIT (P27884) Voltage-dependent P/Q-type calcium channel ...	30	1.8
11	VND_DROME (P22808) Homeobox protein vnd (Protein ventral nervous...	29	2.3
12	PO3F1_HUMAN (Q03052) POU domain, class 3, transcription factor 1...	29	2.3
13	FRAS1_HUMAN (Q86XX4) Extracellular matrix protein FRAS1 precursor	29	2.3
14	PO3F1_MOUSE (P21952) POU domain, class 3, transcription factor 1...	29	2.3
15	PO3F1_RAT (P20267) POU domain, class 3, transcription factor 1 (...	29	2.3
16	RT18B_HUMAN (Q9Y676) 28S ribosomal protein S18b, mitochondrial p...	29	2.3
17	IR08_HCMVA (P16806) Hypothetical protein IRL8 (TRL8)	29	3.1
18	TBX19_MOUSE (Q99ME7) T-box transcription factor TBX19 (T-box pro...	29	3.1
19	SHAN1_RAT (Q9WV48) SH3 and multiple ankyrin repeat domains prote...	29	3.1
20	HYCG_ECOLI (P16433) Formate hydrogenlyase subunit 7 (FHL subunit...	29	3.1
21	SHAN1_HUMAN (Q9Y566) SH3 and multiple ankyrin repeat domains pro...	29	3.1
22	SDC1_HUMAN (P18827) Syndecan-1 precursor (SYND1) (CD138 antigen)	29	3.1
23	MTP1_ARATH (Q9ZT63) Metal tolerance protein 1 (AtMTP1) (Zinc tra...	29	3.1
24	HRPX_PLALO (P04929) Histidine-rich glycoprotein precursor	29	3.1
25	SEN2_YEAST (P16658) tRNA-splicing endonuclease subunit SEN2 (EC ...	29	3.1
26	SI1L2_MOUSE (Q80TE4) Signal-induced proliferation-associated 1-l...	29	3.1
27	NCBP2_ASHGO (Q754W7) Nuclear cap-binding protein subunit 2	29	3.1
28	VE1_BPV1 (P03116) Replication protein E1	28	4.0
29	VE1_BPV2 (P11298) Replication protein E1 (EC 3.6.1.-) (ATP-depen...	28	4.0
30	TOP1_DROME (P30189) DNA topoisomerase 1 (EC 5.99.1.2) (DNA topoi...	28	5.2
31	ASR_ECOLI (P36560) Acid shock protein precursor	28	5.2
32	ASR_ECOL6 (Q8CW15) Acid shock protein precursor	28	5.2
33	ASR_ECO57 (Q8X783) Acid shock protein precursor	28	5.2
34	DLX2_MOUSE (P40764) Homeobox protein DLX-2 (Homeobox protein TES-1)	28	5.2
35	HATB_DICDI (P42526) Hisactophilin-2 (Histidine-rich actin-bindin...	28	5.2
36	RHAD_YERPS (Q66FF5) Rhamnulose-1-phosphate aldolase (EC 4.1.2.19)	28	5.2
37	RHAD_YERPE (Q8ZJ03) Rhamnulose-1-phosphate aldolase (EC 4.1.2.19)	28	5.2
38	FILA_HUMAN (P20930) Filaggrin	28	6.8
39	PQQB_ACIAD (Q6F9J2) Coenzyme PQQ synthesis protein B (Pyrroloqui...	28	6.8
40	GSH2_HUMAN (Q9BZM3) Homeobox protein GSH-2	28	6.8
41	GPTC2_MOUSE (Q7TQC7) G patch domain-containing protein 2	28	6.8
42	BSH_DROME (Q04787) Brain-specific homeobox protein	28	6.8
43	FOXGB_MOUSE (Q60987) Forkhead box protein G1B (Forkhead-related ...	28	6.8
44	FOXGB_RAT (Q00939) Forkhead box protein G1B (Forkhead-related pr...	28	6.8
45	YJZ4_YEAST (P47095) Hypothetical protein YJR024c	28	6.8
46	EGGS_SCHMA (P08016) Putative eggshell protein (Fragment)	28	6.8
47	VE2_HPV29 (P50772) Regulatory protein E2	27	8.9
48	GAK_MOUSE (Q99KY4) Cyclin G-associated kinase (EC 2.7.11.1)	27	8.9
49	RT18B_MOUSE (Q99N84) 28S ribosomal protein S18b, mitochondrial p...	27	8.9
50	YRP4_SHVX (Q04583) Hypothetical 42.2 kDa protein in replicase ge...	27	8.9
51	YH17_YEAST (P38898) Hypothetical 17.1 kDa protein in PUR5 3'region	27	8.9
52	DLL1_XENLA (P53773) Homeobox protein DLL-1 (DLL) (XDLL)	27	8.9
53	CPB1_CAEJA (Q6E3C7) Cytoplasmic polyadenylation element-binding ...	27	8.9
54	OR1D5_HUMAN (P58170) Olfactory receptor 1D5 (Olfactory receptor ...	27	8.9
55	GSH2_MOUSE (P31316) Homeobox protein GSH-2	27	8.9
56	GPTC2_HUMAN (Q9NW75) G patch domain-containing protein 2	27	8.9
57	SEN2_ASHGO (Q74ZY5) tRNA-splicing endonuclease subunit SEN2 (EC ...	27	8.9

>ZAP1_YEAST (P47043) Zinc-responsive transcriptional regulator ZAP1|
          Length = 880

 Score = 34.3 bits (77), Expect = 0.073
 Identities = 20/71 (28%), Positives = 35/71 (49%), Gaps = 3/71 (4%)
 Frame = +2

Query: 50  HTIKGSHHNTCTPLTAPPEHTHHN---HTHKPGRGQTVHAASARLRQAEHTAEARSHYSN 220
           + + GS++NT    +   +H HH    H+HKP R   V+  ++ +  A  TA+  ++  N
Sbjct: 442 NNLNGSNNNTAGATSTDHQHHHHRIQFHSHKPNRNNIVN--NSGISAANTTADLTNNDLN 499

Query: 221 PRSTMRPSYRR 253
              +   SY R
Sbjct: 500 DLISREYSYER 510

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>PC_DROME (P26017) Polycomb group protein Pc (Protein polycomb)|
          Length = 390

 Score = 31.6 bits (70), Expect = 0.47
 Identities = 16/46 (34%), Positives = 25/46 (54%)
 Frame = +2

Query: 32  HYLSIHHTIKGSHHNTCTPLTAPPEHTHHNHTHKPGRGQTVHAASA 169
           H+   HH IK S  N+     +P  H HH+H H+  R +  H++S+
Sbjct: 136 HHHHHHHHIK-SERNSGRRSESPLTHHHHHHHHESKRQRIDHSSSS 180

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>OPA_DROME (P39768) Pair-rule protein odd-paired|
          Length = 609

 Score = 31.6 bits (70), Expect = 0.47
 Identities = 14/35 (40%), Positives = 16/35 (45%)
 Frame = +2

Query: 86  PLTAPPEHTHHNHTHKPGRGQTVHAASARLRQAEH 190
           PL  PP H HH H H+        AASA +    H
Sbjct: 522 PLGPPPSHHHHPHHHQAAPSPGAAAASASMLHHNH 556

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>CREA_GIBFU (O94131) DNA-binding protein creA (Carbon catabolite repressor)|
          Length = 420

 Score = 31.6 bits (70), Expect = 0.47
 Identities = 16/41 (39%), Positives = 21/41 (51%)
 Frame = +2

Query: 89  LTAPPEHTHHNHTHKPGRGQTVHAASARLRQAEHTAEARSH 211
           LTAPP H++ NH H P  G  +H++   L         RSH
Sbjct: 215 LTAPPHHSN-NHRHHPYFGHGMHSSRGHLPTLSSYHMGRSH 254

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>KNOB_PLAFN (P06719) Knob-associated histidine-rich protein precursor (KAHRP)|
          Length = 657

 Score = 31.2 bits (69), Expect = 0.62
 Identities = 18/61 (29%), Positives = 24/61 (39%), Gaps = 1/61 (1%)
 Frame = +2

Query: 47  HHTIKGSHHNTCTPLTAPPE-HTHHNHTHKPGRGQTVHAASARLRQAEHTAEARSHYSNP 223
           HH     HH    P  AP + H HH+H     +   VH       QA H      H+ +P
Sbjct: 65  HHHHHHHHHQHQAPHQAPHQAHHHHHHGEVNHQAPQVHQQVHGQDQAHHHHHHHHHHLHP 124

Query: 224 R 226
           +
Sbjct: 125 Q 125

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>FRAS1_MOUSE (Q80T14) Extracellular matrix protein FRAS1 precursor|
          Length = 4010

 Score = 30.0 bits (66), Expect = 1.4
 Identities = 13/33 (39%), Positives = 16/33 (48%), Gaps = 5/33 (15%)
 Frame = -3

Query: 223 GIGIMRASLCCVLCLSQARTC-----CVDCLPP 140
           G+G  +A   C+ C  Q  TC     C  CLPP
Sbjct: 454 GLGFYQAGSLCLACQPQCSTCTNGLECSSCLPP 486

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>DYRK2_DROME (Q9V3D5) Dual specificity tyrosine-phosphorylation-regulated kinase|
           2 (EC 2.7.12.1) (dDyrk2) (Protein smell impaired at 35A)
          Length = 722

 Score = 30.0 bits (66), Expect = 1.4
 Identities = 13/51 (25%), Positives = 25/51 (49%)
 Frame = +2

Query: 47  HHTIKGSHHNTCTPLTAPPEHTHHNHTHKPGRGQTVHAASARLRQAEHTAE 199
           HH +  +HHN  T   A   H HH+H  +  +  +  A++  +  ++ T +
Sbjct: 664 HHNV--THHNASTATIATTTHHHHHHGGQQQQQSSSGASTMAMSHSQSTGD 712

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>QIN_AVIS3 (P56260) Transforming protein Qin (Oncogene Qin)|
          Length = 387

 Score = 29.6 bits (65), Expect = 1.8
 Identities = 16/44 (36%), Positives = 20/44 (45%)
 Frame = +2

Query: 65  SHHNTCTPLTAPPEHTHHNHTHKPGRGQTVHAASARLRQAEHTA 196
           SHHN+       P H HH+H H P   Q    A+A   + E  A
Sbjct: 37  SHHNS-----HHPHHHHHHHHHHPPPPQQPQRAAAAEEEDEEKA 75

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>FOXGB_CHICK (Q90964) Forkhead box protein G1B (Forkhead-related protein FKHL1)|
           (Transcription factor BF-1) (Brain factor 1) (BF1)
           (CBF-1) (Proto-oncogene C-QIN) (N-62-5) (CEQ 3-1)
          Length = 451

 Score = 29.6 bits (65), Expect = 1.8
 Identities = 16/44 (36%), Positives = 20/44 (45%)
 Frame = +2

Query: 65  SHHNTCTPLTAPPEHTHHNHTHKPGRGQTVHAASARLRQAEHTA 196
           SHHN+       P H HH+H H P   Q    A+A   + E  A
Sbjct: 37  SHHNS-----HHPHHHHHHHHHHPPPPQQPQRAAAAEEEDEEKA 75

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>CAC1A_RABIT (P27884) Voltage-dependent P/Q-type calcium channel alpha-1A subunit|
            (Voltage-gated calcium channel alpha subunit Cav2.1)
            (Calcium channel, L type, alpha-1 polypeptide isoform 4)
            (Brain calcium channel I) (BI)
          Length = 2424

 Score = 29.6 bits (65), Expect = 1.8
 Identities = 15/35 (42%), Positives = 18/35 (51%), Gaps = 2/35 (5%)
 Frame = +2

Query: 107  HTHHNHTHKPGR--GQTVHAASARLRQAEHTAEAR 205
            H HH+H H PGR  G+     SAR R+    A  R
Sbjct: 2219 HHHHHHHHHPGRGPGRVSPGVSARRRRRGPVARVR 2253

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>VND_DROME (P22808) Homeobox protein vnd (Protein ventral nervous system|
           defective) (Homeobox protein NK-2)
          Length = 723

 Score = 29.3 bits (64), Expect = 2.3
 Identities = 19/56 (33%), Positives = 23/56 (41%), Gaps = 1/56 (1%)
 Frame = +2

Query: 47  HHTIKGSHHNTCTPLTAPPEHTHHNHTHKPGRGQTVHAASARLRQAEH-TAEARSH 211
           HH+    H     P    P H  H+H H     Q    A A L  A H + EA+SH
Sbjct: 281 HHSTTEHHAPPSHPQQQHPHHQQHHHPHLLLPQQHHQQAVAPLPLAHHQSGEAQSH 336

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>PO3F1_HUMAN (Q03052) POU domain, class 3, transcription factor 1|
           (Octamer-binding transcription factor 6) (Oct-6)
           (POU-domain transcription factor SCIP)
          Length = 448

 Score = 29.3 bits (64), Expect = 2.3
 Identities = 13/44 (29%), Positives = 18/44 (40%)
 Frame = +2

Query: 44  IHHTIKGSHHNTCTPLTAPPEHTHHNHTHKPGRGQTVHAASARL 175
           +HH +    H      + PP    H H H       +HAA+A L
Sbjct: 184 LHHALHEDGHEAQLEPSPPPHLGAHGHAHGHAHAGGLHAAAAHL 227

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>FRAS1_HUMAN (Q86XX4) Extracellular matrix protein FRAS1 precursor|
          Length = 4007

 Score = 29.3 bits (64), Expect = 2.3
 Identities = 13/39 (33%), Positives = 16/39 (41%), Gaps = 5/39 (12%)
 Frame = -3

Query: 241 WAHGRSGIGIMRASLCCVLCLSQARTC-----CVDCLPP 140
           W     G+G  +A   C+ C  Q  TC     C  C PP
Sbjct: 449 WCVHSCGLGFYQAGSLCLACQPQCSTCTSGLECSSCQPP 487

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>PO3F1_MOUSE (P21952) POU domain, class 3, transcription factor 1|
           (Octamer-binding transcription factor 6) (Oct-6)
           (POU-domain transcription factor SCIP)
          Length = 449

 Score = 29.3 bits (64), Expect = 2.3
 Identities = 13/44 (29%), Positives = 18/44 (40%)
 Frame = +2

Query: 44  IHHTIKGSHHNTCTPLTAPPEHTHHNHTHKPGRGQTVHAASARL 175
           +HH +    H      + PP    H H H       +HAA+A L
Sbjct: 185 LHHALHEDGHEAQLEPSPPPHLGAHGHAHGHAHAGGLHAAAAHL 228

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>PO3F1_RAT (P20267) POU domain, class 3, transcription factor 1|
           (Octamer-binding transcription factor 6) (Oct-6)
           (POU-domain transcription factor SCIP) (Tst-1)
          Length = 451

 Score = 29.3 bits (64), Expect = 2.3
 Identities = 13/44 (29%), Positives = 18/44 (40%)
 Frame = +2

Query: 44  IHHTIKGSHHNTCTPLTAPPEHTHHNHTHKPGRGQTVHAASARL 175
           +HH +    H      + PP    H H H       +HAA+A L
Sbjct: 187 LHHALHEDGHEAQLEPSPPPHLGAHGHAHGHAHAGGLHAAAAHL 230

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>RT18B_HUMAN (Q9Y676) 28S ribosomal protein S18b, mitochondrial precursor|
           (MRP-S18-b) (Mrps18b) (MRP-S18-2)
          Length = 258

 Score = 29.3 bits (64), Expect = 2.3
 Identities = 17/48 (35%), Positives = 25/48 (52%), Gaps = 3/48 (6%)
 Frame = +3

Query: 240 QATDEALLL---PSLLAQRVVFSERRAGELTGSPSAPTRRSGSPWSAW 374
           +A D  LL+   P +  + + FS    G ++ +P APT  SG PW  W
Sbjct: 156 KARDHGLLIYHIPQVEPRDLDFSTSH-GAVSATPPAPTLVSGDPWYPW 202

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>IR08_HCMVA (P16806) Hypothetical protein IRL8 (TRL8)|
          Length = 129

 Score = 28.9 bits (63), Expect = 3.1
 Identities = 16/45 (35%), Positives = 21/45 (46%)
 Frame = +1

Query: 22  YSAPLFIHPSYDKRFTPQHMHTLDCTTRTHTPQSHTQARQGADSP 156
           +S P+  HP  D+   P H+ T     R+H  Q  T     ADSP
Sbjct: 39  HSRPVGYHPQEDESQLPNHLETRVTVYRSHASQLKT-----ADSP 78

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>TBX19_MOUSE (Q99ME7) T-box transcription factor TBX19 (T-box protein 19) (T-box|
           factor, pituitary)
          Length = 446

 Score = 28.9 bits (63), Expect = 3.1
 Identities = 12/29 (41%), Positives = 14/29 (48%)
 Frame = +2

Query: 53  TIKGSHHNTCTPLTAPPEHTHHNHTHKPG 139
           T   S++   TPL  P  HTHH   H  G
Sbjct: 254 TAANSNYQYATPLPLPAPHTHHGCEHYAG 282

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>SHAN1_RAT (Q9WV48) SH3 and multiple ankyrin repeat domains protein 1 (Shank1)|
            (GKAP/SAPAP-interacting protein) (SPANK-1) (Synamon)
            (Somatostatin receptor-interacting protein)
            (SSTR-interacting protein) (SSTRIP)
          Length = 2167

 Score = 28.9 bits (63), Expect = 3.1
 Identities = 12/30 (40%), Positives = 14/30 (46%)
 Frame = +2

Query: 47   HHTIKGSHHNTCTPLTAPPEHTHHNHTHKP 136
            HH     HH+      APP   HH+H H P
Sbjct: 1006 HHPPHHHHHH------APPPQPHHHHAHPP 1029

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>HYCG_ECOLI (P16433) Formate hydrogenlyase subunit 7 (FHL subunit 7)|
           (Hydrogenase-3 component G)
          Length = 255

 Score = 28.9 bits (63), Expect = 3.1
 Identities = 16/43 (37%), Positives = 21/43 (48%), Gaps = 1/43 (2%)
 Frame = -1

Query: 195 AVCSACRKRALAAWTVCPLPGLCV*LW-CVCSGGAVKGVHVLW 70
           AV  A R  AL AW   P P +C+    C  SGG    ++ +W
Sbjct: 87  AVTRAMRSPALRAWQSAPDPKICISYGACGNSGGIFHDLYCVW 129

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>SHAN1_HUMAN (Q9Y566) SH3 and multiple ankyrin repeat domains protein 1 (Shank1)|
            (Somatostatin receptor-interacting protein)
            (SSTR-interacting protein) (SSTRIP)
          Length = 2161

 Score = 28.9 bits (63), Expect = 3.1
 Identities = 12/30 (40%), Positives = 14/30 (46%)
 Frame = +2

Query: 47   HHTIKGSHHNTCTPLTAPPEHTHHNHTHKP 136
            HH     HH+      APP   HH+H H P
Sbjct: 998  HHPPHHHHHH------APPPQPHHHHAHPP 1021

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>SDC1_HUMAN (P18827) Syndecan-1 precursor (SYND1) (CD138 antigen)|
          Length = 310

 Score = 28.9 bits (63), Expect = 3.1
 Identities = 18/55 (32%), Positives = 23/55 (41%), Gaps = 4/55 (7%)
 Frame = +2

Query: 47  HHTIKGSHHNTCTPLTAPPEHTHHNHTHKPGRGQTVHA----ASARLRQAEHTAE 199
           H  ++  HH T TP        H  HT   G   T  A    AS++L  AE + E
Sbjct: 154 HRDMQPGHHETSTPAGPSQADLHTPHTEDGGPSATERAAEDGASSQLPAAEGSGE 208

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>MTP1_ARATH (Q9ZT63) Metal tolerance protein 1 (AtMTP1) (Zinc transporter|
           ZAT-1) (ZAT1p) [Contains: Metal tolerance protein 1
           short form]
          Length = 398

 Score = 28.9 bits (63), Expect = 3.1
 Identities = 13/34 (38%), Positives = 16/34 (47%), Gaps = 2/34 (5%)
 Frame = +2

Query: 68  HHNTCTPLTAPPEHTHHNHT--HKPGRGQTVHAA 163
           HHN    +T    H HH+H   H  G G+  H A
Sbjct: 198 HHNHSHGVTVTTHHHHHDHEHGHSHGHGEDKHHA 231

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>HRPX_PLALO (P04929) Histidine-rich glycoprotein precursor|
          Length = 351

 Score = 28.9 bits (63), Expect = 3.1
 Identities = 18/61 (29%), Positives = 22/61 (36%)
 Frame = +2

Query: 32  HYLSIHHTIKGSHHNTCTPLTAPPEHTHHNHTHKPGRGQTVHAASARLRQAEHTAEARSH 211
           H+L  HH     HH+      AP  H HH+H H P      H A        H      H
Sbjct: 164 HHLGYHHHHAPHHHHHHHH--AP--HHHHHHHHAPHHHHHHHHAPHHHHHHHHAPHHHHH 219

Query: 212 Y 214
           +
Sbjct: 220 H 220



 Score = 28.1 bits (61), Expect = 5.2
 Identities = 16/61 (26%), Positives = 20/61 (32%)
 Frame = +2

Query: 32  HYLSIHHTIKGSHHNTCTPLTAPPEHTHHNHTHKPGRGQTVHAASARLRQAEHTAEARSH 211
           H+   HH     HH+   P      H HH+H H P      H A        H      H
Sbjct: 176 HHHHHHHAPHHHHHHHHAP------HHHHHHHHAPHHHHHHHHAPHHHHHHHHGHHHHHH 229

Query: 212 Y 214
           +
Sbjct: 230 H 230

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>SEN2_YEAST (P16658) tRNA-splicing endonuclease subunit SEN2 (EC 3.1.27.9)|
           (tRNA-intron endonuclease SEN2) (Splicing endonuclease
           protein 2)
          Length = 377

 Score = 28.9 bits (63), Expect = 3.1
 Identities = 15/46 (32%), Positives = 23/46 (50%), Gaps = 2/46 (4%)
 Frame = +1

Query: 268 HHYWHNGWCSRSGGR--GSLRVHLRRPPGDQVLLGRLGLDERLAAE 399
           HHY  +GWC RSG +      ++ R PP        +GLD  ++ +
Sbjct: 267 HHYRSHGWCVRSGIKFGCDYLLYKRGPPFQHAEFCVMGLDHDVSKD 312

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>SI1L2_MOUSE (Q80TE4) Signal-induced proliferation-associated 1-like protein 2|
          Length = 1722

 Score = 28.9 bits (63), Expect = 3.1
 Identities = 14/48 (29%), Positives = 22/48 (45%)
 Frame = +1

Query: 121  SHTQARQGADSPRSKCALATGRAHSRGSLALFQSQIDHAPKLQTRPYY 264
            SH+   Q + SP + C+ +TG   S     +       AP   T+PY+
Sbjct: 1341 SHSSGSQHSGSPSAHCSKSTGSLDSSKGYIVTHGGGQQAPGAVTKPYH 1388

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>NCBP2_ASHGO (Q754W7) Nuclear cap-binding protein subunit 2|
          Length = 218

 Score = 28.9 bits (63), Expect = 3.1
 Identities = 18/60 (30%), Positives = 29/60 (48%), Gaps = 1/60 (1%)
 Frame = +2

Query: 35  YLSIHHTIKGSHHNTCTPLTAPPE-HTHHNHTHKPGRGQTVHAASARLRQAEHTAEARSH 211
           Y+ + + I   +H     +  P + H HH+H H    GQ  HAA+A++   E   E  S+
Sbjct: 156 YVPLENRIGAVNHFGARRIRDPHKNHHHHHHGHHHHHGQP-HAAAAKVNPMEVEEELDSY 214

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>VE1_BPV1 (P03116) Replication protein E1|
          Length = 605

 Score = 28.5 bits (62), Expect = 4.0
 Identities = 17/52 (32%), Positives = 23/52 (44%), Gaps = 1/52 (1%)
 Frame = +1

Query: 73  QHMHTLDCTTRT-HTPQSHTQARQGADSPRSKCALATGRAHSRGSLALFQSQ 225
           Q  H  DC T   H  ++ TQA       +++C LATG    +  L  F  Q
Sbjct: 354 QAKHVKDCATMVRHYLRAETQALSMPAYIKARCKLATGEGSWKSILTFFNYQ 405

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>VE1_BPV2 (P11298) Replication protein E1 (EC 3.6.1.-) (ATP-dependent|
           helicase E1)
          Length = 604

 Score = 28.5 bits (62), Expect = 4.0
 Identities = 17/52 (32%), Positives = 23/52 (44%), Gaps = 1/52 (1%)
 Frame = +1

Query: 73  QHMHTLDCTTRT-HTPQSHTQARQGADSPRSKCALATGRAHSRGSLALFQSQ 225
           Q  H  DC T   H  ++ TQA       +++C LATG    +  L  F  Q
Sbjct: 353 QAKHVKDCATMVRHYLRAETQALSMPAYIKTRCKLATGEGSWKSILTFFNYQ 404

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>TOP1_DROME (P30189) DNA topoisomerase 1 (EC 5.99.1.2) (DNA topoisomerase I)|
          Length = 972

 Score = 28.1 bits (61), Expect = 5.2
 Identities = 13/49 (26%), Positives = 22/49 (44%)
 Frame = +2

Query: 107 HTHHNHTHKPGRGQTVHAASARLRQAEHTAEARSHYSNPRSTMRPSYRR 253
           H HH+H H      + H +S++ +  +   E +S  S+  S    S  R
Sbjct: 32  HGHHHHHHSSSSSSSKHKSSSKDKHRDREREHKSSNSSSSSKEHKSSSR 80

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>ASR_ECOLI (P36560) Acid shock protein precursor|
          Length = 102

 Score = 28.1 bits (61), Expect = 5.2
 Identities = 17/61 (27%), Positives = 24/61 (39%), Gaps = 7/61 (11%)
 Frame = +2

Query: 83  TPLTAPPEHTHHNHTHKPGRGQTVHAA-------SARLRQAEHTAEARSHYSNPRSTMRP 241
           T   AP + THH   HK    Q   AA        A  +  E  A+A   ++   S  +P
Sbjct: 34  TTKAAPAKTTHHKKQHKAAPAQKAQAAKKHHKNTKAEQKAPEQKAQAAKKHAKKHSHQQP 93

Query: 242 S 244
           +
Sbjct: 94  A 94

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>ASR_ECOL6 (Q8CW15) Acid shock protein precursor|
          Length = 102

 Score = 28.1 bits (61), Expect = 5.2
 Identities = 17/61 (27%), Positives = 24/61 (39%), Gaps = 7/61 (11%)
 Frame = +2

Query: 83  TPLTAPPEHTHHNHTHKPGRGQTVHA-------ASARLRQAEHTAEARSHYSNPRSTMRP 241
           T   AP + THH   HK    Q   A       A A  +  E  A+A   ++   S  +P
Sbjct: 34  TTKAAPAKTTHHKKQHKAAPAQKAQAAKKHHKNAKAEQKAPEQKAQAAKKHAKKHSHQQP 93

Query: 242 S 244
           +
Sbjct: 94  A 94

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>ASR_ECO57 (Q8X783) Acid shock protein precursor|
          Length = 102

 Score = 28.1 bits (61), Expect = 5.2
 Identities = 17/61 (27%), Positives = 24/61 (39%), Gaps = 7/61 (11%)
 Frame = +2

Query: 83  TPLTAPPEHTHHNHTHKPGRGQTVHAA-------SARLRQAEHTAEARSHYSNPRSTMRP 241
           T   AP + THH   HK    Q   AA        A  +  E  A+A   ++   S  +P
Sbjct: 34  TTKAAPAKTTHHKKQHKAAPAQKAQAAKKHHKNTKAEQKAPEQKAQAAKKHAKKHSHQQP 93

Query: 242 S 244
           +
Sbjct: 94  A 94

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>DLX2_MOUSE (P40764) Homeobox protein DLX-2 (Homeobox protein TES-1)|
          Length = 332

 Score = 28.1 bits (61), Expect = 5.2
 Identities = 16/46 (34%), Positives = 20/46 (43%), Gaps = 6/46 (13%)
 Frame = +2

Query: 47  HHTIKGS--HHNTCTPLTAPPE----HTHHNHTHKPGRGQTVHAAS 166
           +H   GS  H     PL  P +    H HH+H H  G G  V A +
Sbjct: 285 YHQASGSASHLQATAPLLHPSQTPQAHHHHHHHHHAGGGAPVSAGT 330

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>HATB_DICDI (P42526) Hisactophilin-2 (Histidine-rich actin-binding protein 2)|
           (HS II)
          Length = 117

 Score = 28.1 bits (61), Expect = 5.2
 Identities = 14/41 (34%), Positives = 15/41 (36%)
 Frame = +2

Query: 32  HYLSIHHTIKGSHHNTCTPLTAPPEHTHHNHTHKPGRGQTV 154
           HYLS  H    +HH           H HH H H    G  V
Sbjct: 11  HYLSAEHDHVKTHHG---------HHDHHTHFHIENHGSKV 42

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>RHAD_YERPS (Q66FF5) Rhamnulose-1-phosphate aldolase (EC 4.1.2.19)|
          Length = 274

 Score = 28.1 bits (61), Expect = 5.2
 Identities = 10/17 (58%), Positives = 12/17 (70%)
 Frame = +1

Query: 277 WHNGWCSRSGGRGSLRV 327
           WH GW  R+GG  SLR+
Sbjct: 21  WHKGWDERNGGNISLRL 37

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>RHAD_YERPE (Q8ZJ03) Rhamnulose-1-phosphate aldolase (EC 4.1.2.19)|
          Length = 274

 Score = 28.1 bits (61), Expect = 5.2
 Identities = 10/17 (58%), Positives = 12/17 (70%)
 Frame = +1

Query: 277 WHNGWCSRSGGRGSLRV 327
           WH GW  R+GG  SLR+
Sbjct: 21  WHKGWDERNGGNISLRL 37

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>FILA_HUMAN (P20930) Filaggrin|
          Length = 4061

 Score = 27.7 bits (60), Expect = 6.8
 Identities = 16/57 (28%), Positives = 24/57 (42%), Gaps = 6/57 (10%)
 Frame = +2

Query: 59  KGSHHNTCTPLTAPPEHTHHNHTHKPGRGQTVH------AASARLRQAEHTAEARSH 211
           +GSHH      +     +HH+HT   GR    H      +AS + R  E + +   H
Sbjct: 528 QGSHHEQSVNRSGH-SGSHHSHTTSQGRSDASHGQSGSRSASRQTRNEEQSGDGTRH 583

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>PQQB_ACIAD (Q6F9J2) Coenzyme PQQ synthesis protein B (Pyrroloquinoline quinone|
           biosynthesis protein B)
          Length = 304

 Score = 27.7 bits (60), Expect = 6.8
 Identities = 17/47 (36%), Positives = 22/47 (46%)
 Frame = +1

Query: 133 ARQGADSPRSKCALATGRAHSRGSLALFQSQIDHAPKLQTRPYYCHH 273
           A+Q A +P  +   +  R  S GS+ L  SQIDH   L      C H
Sbjct: 61  AQQIAHNPELQAPSSIRRGTSIGSIILTDSQIDHTTGLLNLREGCPH 107

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>GSH2_HUMAN (Q9BZM3) Homeobox protein GSH-2|
          Length = 304

 Score = 27.7 bits (60), Expect = 6.8
 Identities = 13/39 (33%), Positives = 18/39 (46%), Gaps = 1/39 (2%)
 Frame = +2

Query: 98  PPEHTHHNH-THKPGRGQTVHAASARLRQAEHTAEARSH 211
           PP+H HH+H   +PG      AA+A    A      + H
Sbjct: 131 PPQHHHHHHQPQQPGSAAAAAAAAAAAAAAAALGHPQHH 169

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>GPTC2_MOUSE (Q7TQC7) G patch domain-containing protein 2|
          Length = 527

 Score = 27.7 bits (60), Expect = 6.8
 Identities = 16/57 (28%), Positives = 21/57 (36%)
 Frame = +1

Query: 151 SPRSKCALATGRAHSRGSLALFQSQIDHAPKLQTRPYYCHHYWHNGWCSRSGGRGSL 321
           S +++   A    HSR      + Q       + R Y  HH W  G C   G   SL
Sbjct: 39  SEQARGGFAETGEHSRNLSCPLKRQARKRRGRKRRSYNVHHPWETGHCLSEGSDSSL 95

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>BSH_DROME (Q04787) Brain-specific homeobox protein|
          Length = 427

 Score = 27.7 bits (60), Expect = 6.8
 Identities = 19/59 (32%), Positives = 27/59 (45%), Gaps = 4/59 (6%)
 Frame = +2

Query: 65  SHHNTCTPLTAPPEHTHHNHTHKPGRGQTVHAASARLRQAE--HTAE--ARSHYSNPRS 229
           +H N   P   P +H+H   +H P        A+AR  QA   +  E   +S +S PRS
Sbjct: 91  AHDNN--PHKHPSQHSHPPQSHPPASASASATATARSNQAASGYAGEDYGKSMHSTPRS 147

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>FOXGB_MOUSE (Q60987) Forkhead box protein G1B (Forkhead-related protein FKHL1)|
           (Transcription factor BF-1) (Brain factor 1) (BF1)
          Length = 481

 Score = 27.7 bits (60), Expect = 6.8
 Identities = 13/30 (43%), Positives = 15/30 (50%)
 Frame = +2

Query: 47  HHTIKGSHHNTCTPLTAPPEHTHHNHTHKP 136
           HH   G HHN+      P  H HH+H H P
Sbjct: 33  HHASHG-HHNS----HHPQHHHHHHHHHHP 57

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>FOXGB_RAT (Q00939) Forkhead box protein G1B (Forkhead-related protein FKHL1)|
           (Transcription factor BF-1) (Brain factor 1) (BF1)
          Length = 480

 Score = 27.7 bits (60), Expect = 6.8
 Identities = 13/30 (43%), Positives = 15/30 (50%)
 Frame = +2

Query: 47  HHTIKGSHHNTCTPLTAPPEHTHHNHTHKP 136
           HH   G HHN+      P  H HH+H H P
Sbjct: 33  HHASHG-HHNS----HHPQHHHHHHHHHHP 57

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>YJZ4_YEAST (P47095) Hypothetical protein YJR024c|
          Length = 244

 Score = 27.7 bits (60), Expect = 6.8
 Identities = 8/20 (40%), Positives = 14/20 (70%)
 Frame = +1

Query: 265 CHHYWHNGWCSRSGGRGSLR 324
           C  ++HN WC+ +GG  S++
Sbjct: 24  CKQFFHNNWCTGTGGGISIK 43

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>EGGS_SCHMA (P08016) Putative eggshell protein (Fragment)|
          Length = 149

 Score = 27.7 bits (60), Expect = 6.8
 Identities = 12/33 (36%), Positives = 14/33 (42%)
 Frame = +2

Query: 47  HHTIKGSHHNTCTPLTAPPEHTHHNHTHKPGRG 145
           HH  +  HH           H HH H HK G+G
Sbjct: 123 HHDHRHHHHEH-------DHHHHHEHDHKNGKG 148

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>VE2_HPV29 (P50772) Regulatory protein E2|
          Length = 388

 Score = 27.3 bits (59), Expect = 8.9
 Identities = 32/142 (22%), Positives = 53/142 (37%), Gaps = 29/142 (20%)
 Frame = +1

Query: 40  IHPSYDKRFTPQHMHTLDCTTRTHTPQSHTQARQG--ADSPRSKCALATGR--------- 186
           + P   ++   QH       T THTP +   AR G   DS R++   +T +         
Sbjct: 246 VGPGPQQQQQQQHQQQQQQQTPTHTPSTQACARTGGPVDSNRTRDCDSTSQNPYRHPSDP 305

Query: 187 -----AHSRG---SLALFQSQIDHAPK------LQTRPYYCHHYWHNG----WCSRSGGR 312
                 H RG   SL  F+ ++ +  K        T  + C     +     W +    R
Sbjct: 306 DCAPVIHLRGDPNSLKCFRYRLQNGKKGLYCKASSTWRWSCEPENQSAFVTIWYTSVTQR 365

Query: 313 GSLRVHLRRPPGDQVLLGRLGL 378
                +++ PPG Q +LG + +
Sbjct: 366 AEFLANVKIPPGMQAILGHMSV 387

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>GAK_MOUSE (Q99KY4) Cyclin G-associated kinase (EC 2.7.11.1)|
          Length = 1305

 Score = 27.3 bits (59), Expect = 8.9
 Identities = 12/21 (57%), Positives = 15/21 (71%)
 Frame = +3

Query: 309  AGELTGSPSAPTRRSGSPWSA 371
            AG   G+P APT++S SPW A
Sbjct: 1101 AGGFVGAP-APTQKSNSPWQA 1120

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>RT18B_MOUSE (Q99N84) 28S ribosomal protein S18b, mitochondrial precursor|
           (MRP-S18-b) (Mrps18b) (MRP-S18-2)
          Length = 254

 Score = 27.3 bits (59), Expect = 8.9
 Identities = 10/21 (47%), Positives = 13/21 (61%)
 Frame = +3

Query: 312 GELTGSPSAPTRRSGSPWSAW 374
           G ++ +P APT  SG PW  W
Sbjct: 180 GAVSVTPPAPTLLSGEPWYPW 200

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>YRP4_SHVX (Q04583) Hypothetical 42.2 kDa protein in replicase gene 3'region|
           (ORF4)
          Length = 380

 Score = 27.3 bits (59), Expect = 8.9
 Identities = 19/59 (32%), Positives = 29/59 (49%), Gaps = 1/59 (1%)
 Frame = +1

Query: 67  TPQHMHTLDCTTRTHTPQSHTQARQGADSPRS-KCALATGRAHSRGSLALFQSQIDHAP 240
           T ++ +TL   T   T Q+ TQ RQG D P   K    T  ++   +L   Q+ ++H P
Sbjct: 73  TTRNFNTLLSRTAEPTGQAQTQLRQGFDEPDGHKSEQRTFFSNLDTALNATQALLNHVP 131

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>YH17_YEAST (P38898) Hypothetical 17.1 kDa protein in PUR5 3'region|
          Length = 153

 Score = 27.3 bits (59), Expect = 8.9
 Identities = 12/26 (46%), Positives = 14/26 (53%)
 Frame = +2

Query: 50  HTIKGSHHNTCTPLTAPPEHTHHNHT 127
           HT   +H +T TP   P  HT H HT
Sbjct: 31  HTPTHTHPHTPTPTPHPHPHTPHPHT 56

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>DLL1_XENLA (P53773) Homeobox protein DLL-1 (DLL) (XDLL)|
          Length = 250

 Score = 27.3 bits (59), Expect = 8.9
 Identities = 18/69 (26%), Positives = 28/69 (40%)
 Frame = +2

Query: 32  HYLSIHHTIKGSHHNTCTPLTAPPEHTHHNHTHKPGRGQTVHAASARLRQAEHTAEARSH 211
           HY S+H    GSHH+        P+H H  +           AA   +  ++H+   +S 
Sbjct: 39  HYPSLHCLHSGSHHH--------PQHQHDTNYSGSNSYSRSLAAYPYMSHSQHSPYLQSC 90

Query: 212 YSNPRSTMR 238
            SN  +  R
Sbjct: 91  NSNTTTQSR 99

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>CPB1_CAEJA (Q6E3C7) Cytoplasmic polyadenylation element-binding protein 1|
          Length = 617

 Score = 27.3 bits (59), Expect = 8.9
 Identities = 16/48 (33%), Positives = 21/48 (43%)
 Frame = +2

Query: 47  HHTIKGSHHNTCTPLTAPPEHTHHNHTHKPGRGQTVHAASARLRQAEH 190
           HH+    HH +       P H HHNHTH+       +  S+ L  A H
Sbjct: 544 HHSTSHYHHRST------PSH-HHNHTHQ-------NVTSSLLEHAPH 577

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>OR1D5_HUMAN (P58170) Olfactory receptor 1D5 (Olfactory receptor 17-31)|
           (OR17-31)
          Length = 312

 Score = 27.3 bits (59), Expect = 8.9
 Identities = 18/62 (29%), Positives = 27/62 (43%), Gaps = 25/62 (40%)
 Frame = -1

Query: 153 TVCPL-------PGLCV*LWCVCSGGAV------------------KGVHVLWCEPFIV* 49
           T CPL       PGLCV L  +C G +V                  + +H L+C+ +I+ 
Sbjct: 126 TCCPLHYVTAMSPGLCVLLLSLCWGLSVLYGLLLTFLLTRVTFCGPREIHYLFCDMYILL 185

Query: 48  WM 43
           W+
Sbjct: 186 WL 187

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>GSH2_MOUSE (P31316) Homeobox protein GSH-2|
          Length = 305

 Score = 27.3 bits (59), Expect = 8.9
 Identities = 14/38 (36%), Positives = 20/38 (52%)
 Frame = +2

Query: 98  PPEHTHHNHTHKPGRGQTVHAASARLRQAEHTAEARSH 211
           PP+H HH+H  +P +  +  AA+A    A   A A  H
Sbjct: 131 PPQHHHHHH--QPQQPGSAAAAAAAAAAAAAAAAALGH 166

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>GPTC2_HUMAN (Q9NW75) G patch domain-containing protein 2|
          Length = 528

 Score = 27.3 bits (59), Expect = 8.9
 Identities = 16/57 (28%), Positives = 21/57 (36%)
 Frame = +1

Query: 151 SPRSKCALATGRAHSRGSLALFQSQIDHAPKLQTRPYYCHHYWHNGWCSRSGGRGSL 321
           S +++   A    HSR      + Q       + R Y  HH W  G C   G   SL
Sbjct: 40  SEQARGGFAETGDHSRSISCPLKRQARKRRGRKRRSYNVHHPWETGHCLSEGSDSSL 96

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>SEN2_ASHGO (Q74ZY5) tRNA-splicing endonuclease subunit SEN2 (EC 3.1.27.9)|
           (tRNA-intron endonuclease SEN2)
          Length = 356

 Score = 27.3 bits (59), Expect = 8.9
 Identities = 9/13 (69%), Positives = 10/13 (76%)
 Frame = +1

Query: 268 HHYWHNGWCSRSG 306
           HHY  +GWC RSG
Sbjct: 246 HHYRSHGWCVRSG 258


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 53,019,258
Number of Sequences: 219361
Number of extensions: 1021952
Number of successful extensions: 4352
Number of sequences better than 10.0: 57
Number of HSP's better than 10.0 without gapping: 3887
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4244
length of database: 80,573,946
effective HSP length: 109
effective length of database: 56,663,597
effective search space used: 1359926328
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)

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full-length cDNA and EST

Clone Information

BLAST Search Result