Clone Name | rbart23d01 |
---|---|
Clone Library Name | barley_pub |
>gb|AY074784.1| Triticum aestivum dehydroascorbate reductase (DHAR) mRNA, complete cds Length = 956 Score = 157 bits (79), Expect = 3e-35 Identities = 91/95 (95%) Strand = Plus / Minus Query: 308 ggcgggggagcttacgggttcaccttcggcgcccacccggcgatcaggttctccttggtc 367 |||||| | |||||||||||||| |||||||||||||||||||||||||||||||||||| Sbjct: 724 ggcgggagggcttacgggttcactttcggcgcccacccggcgatcaggttctccttggtc 665 Query: 368 ggcttggtcttgacgaacgactcgcggctgaagag 402 | ||||||||||||||||||||||||||||||||| Sbjct: 664 gccttggtcttgacgaacgactcgcggctgaagag 630 Score = 44.1 bits (22), Expect = 0.34 Identities = 22/22 (100%) Strand = Plus / Minus Query: 198 aggctcgctcgcattattccaa 219 |||||||||||||||||||||| Sbjct: 806 aggctcgctcgcattattccaa 785
>gb|DQ090998.1| Puccinellia tenuiflora dehydroascorbate reductase protein mRNA, partial cds Length = 202 Score = 109 bits (55), Expect = 7e-21 Identities = 76/83 (91%) Strand = Plus / Minus Query: 317 gcttacgggttcaccttcggcgcccacccggcgatcaggttctccttggtcggcttggtc 376 |||||||||||||| || |||||||| ||||||||||||||||||||||| ||||||||| Sbjct: 200 gcttacgggttcactttgggcgcccatccggcgatcaggttctccttggtgggcttggtc 141 Query: 377 ttgacgaacgactcgcggctgaa 399 |||||||| || || |||||||| Sbjct: 140 ttgacgaaggattcccggctgaa 118
>gb|DQ093638.1| Eustoma grandiflorum dehydroascorbate reductase protein mRNA, partial cds Length = 195 Score = 99.6 bits (50), Expect = 7e-18 Identities = 71/78 (91%) Strand = Plus / Minus Query: 322 cgggttcaccttcggcgcccacccggcgatcaggttctccttggtcggcttggtcttgac 381 ||||||||| || |||||||| ||||||||||||||||||||||| |||||||||||||| Sbjct: 195 cgggttcactttgggcgcccatccggcgatcaggttctccttggtgggcttggtcttgac 136 Query: 382 gaacgactcgcggctgaa 399 ||| || || |||||||| Sbjct: 135 gaaggattcccggctgaa 118
>gb|AE017283.1| Propionibacterium acnes KPA171202, complete genome Length = 2560265 Score = 44.1 bits (22), Expect = 0.34 Identities = 25/26 (96%) Strand = Plus / Minus Query: 364 ggtcggcttggtcttgacgaacgact 389 ||||||| |||||||||||||||||| Sbjct: 1119794 ggtcggcctggtcttgacgaacgact 1119769
>emb|CR762443.6| Zebrafish DNA sequence from clone DKEY-3A5 in linkage group 10, complete sequence Length = 213185 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 32 cattatttatccatccatcat 52 ||||||||||||||||||||| Sbjct: 138665 cattatttatccatccatcat 138645
>emb|AL160412.14| Human DNA sequence from clone RP5-827E24 on chromosome 20 Contains ESTs, STSs and GSSs, complete sequence Length = 111824 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 30 tccattatttatccatccatc 50 ||||||||||||||||||||| Sbjct: 11317 tccattatttatccatccatc 11297
>gb|AC107925.5| Homo sapiens chromosome 11, clone RP11-379A20, complete sequence Length = 170801 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 34 ttatttatccatccatcatac 54 ||||||||||||||||||||| Sbjct: 66638 ttatttatccatccatcatac 66618
>emb|BX255913.8| Zebrafish DNA sequence from clone DKEY-85N7 in linkage group 20, complete sequence Length = 248581 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 30 tccattatttatccatccatc 50 ||||||||||||||||||||| Sbjct: 126747 tccattatttatccatccatc 126767 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 30 tccattatttatccatccatc 50 ||||||||||||||||||||| Sbjct: 126483 tccattatttatccatccatc 126503
>gb|AC005932.1|AC005932 Homo sapiens chromosome 19, cosmid R31317, complete sequence Length = 41696 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 30 tccattatttatccatccatc 50 ||||||||||||||||||||| Sbjct: 12239 tccattatttatccatccatc 12259
>gb|AC109221.32| Mus musculus chromosome 7, clone RP23-207N2, complete sequence Length = 195657 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 132 agccaggcagggggcagacag 152 ||||||||||||||||||||| Sbjct: 71257 agccaggcagggggcagacag 71277
>dbj|AP006840.1| Symbiobacterium thermophilum IAM 14863 DNA, complete genome Length = 3566135 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 321 acgggttcaccttcggcgccc 341 ||||||||||||||||||||| Sbjct: 209716 acgggttcaccttcggcgccc 209736
>gb|CP000031.1| Silicibacter pomeroyi DSS-3, complete genome Length = 4109442 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 360 ccttggtcggcttggtcttg 379 |||||||||||||||||||| Sbjct: 505341 ccttggtcggcttggtcttg 505322
>gb|AC006770.1| Caenorhabditis elegans cosmid Y46B2A, complete sequence Length = 22382 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 9 aaattctgaattttattcag 28 |||||||||||||||||||| Sbjct: 9248 aaattctgaattttattcag 9267
>ref|XM_366481.1| Magnaporthe grisea 70-15 chromosome VII predicted protein (MG02557.4) partial mRNA Length = 966 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 367 cggcttggtcttgacgaacg 386 |||||||||||||||||||| Sbjct: 216 cggcttggtcttgacgaacg 197
>ref|XM_714685.1| Candida albicans SC5314 hypothetical protein (CaO19_14092), mRNA Length = 1569 Score = 40.1 bits (20), Expect = 5.4 Identities = 23/24 (95%) Strand = Plus / Minus Query: 259 tactactgccatcactactggcac 282 ||||||||||| |||||||||||| Sbjct: 1363 tactactgccagcactactggcac 1340
>ref|XM_714802.1| Candida albicans SC5314 hypothetical protein (CaO19_6800), mRNA Length = 1569 Score = 40.1 bits (20), Expect = 5.4 Identities = 23/24 (95%) Strand = Plus / Minus Query: 259 tactactgccatcactactggcac 282 ||||||||||| |||||||||||| Sbjct: 1363 tactactgccagcactactggcac 1340
>gb|AC144402.2| Atelerix albiventris clone LBNL4-89B6, complete sequence Length = 161430 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 179 caggcagagcacacagcaga 198 |||||||||||||||||||| Sbjct: 111810 caggcagagcacacagcaga 111829
>gb|CP000270.1| Burkholderia xenovorans LB400 chromosome 1, complete sequence Length = 4895836 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 345 cggcgatcaggttctccttg 364 |||||||||||||||||||| Sbjct: 3304928 cggcgatcaggttctccttg 3304947
>emb|CR457462.13| Zebrafish DNA sequence from clone CH211-1O7 in linkage group 13, complete sequence Length = 166823 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 31 ccattatttatccatccatc 50 |||||||||||||||||||| Sbjct: 90368 ccattatttatccatccatc 90349
>emb|BX324227.16| Zebrafish DNA sequence from clone CH211-149M17 in linkage group 15, complete sequence Length = 129726 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 17 aattttattcagctccatta 36 |||||||||||||||||||| Sbjct: 28373 aattttattcagctccatta 28392
>dbj|BA000040.2| Bradyrhizobium japonicum USDA 110 DNA, complete genome Length = 9105828 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 349 gatcaggttctccttggtcg 368 |||||||||||||||||||| Sbjct: 3814314 gatcaggttctccttggtcg 3814295
>emb|Z84494.1|HSLUCA7 Human DNA sequence from clone XXcos-7 on chromosome 3, complete sequence Length = 16950 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 132 agccaggcagggggcagaca 151 |||||||||||||||||||| Sbjct: 12882 agccaggcagggggcagaca 12863 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 2,537,471 Number of Sequences: 3902068 Number of extensions: 2537471 Number of successful extensions: 53259 Number of sequences better than 10.0: 22 Number of HSP's better than 10.0 without gapping: 22 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 53099 Number of HSP's gapped (non-prelim): 160 length of query: 402 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 380 effective length of database: 17,147,199,772 effective search space: 6515935913360 effective search space used: 6515935913360 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)