ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbart23c10 |
|---|---|
| Clone Library Name | barley_pub |
>ORCT3_HUMAN (Q9Y226) Organic-cation transporter-like 3 (Solute carrier family| 22 member 13) Length = 551 Score = 41.6 bits (96), Expect = 5e-04 Identities = 25/87 (28%), Positives = 35/87 (40%) Frame = -1 Query: 403 TCTAFNVIMMYSIELFPTSVRNSAVGLVRQXXXXXXXXXXXXXXXGRERXXXXXXXXXXX 224 T AF + +YS ELFPT +R + +GLV G Sbjct: 429 TAAAFTISYVYSAELFPTILRQTGMGLVGIFSRIGGILTPLVILLGEYHAALPMLIYGSL 488 Query: 223 XGCFGMFAACLPETRGKGMSDTMDEEE 143 G+ LPET G+G+ DT+ + E Sbjct: 489 PIVAGLLCTLLPETHGQGLKDTLQDLE 515
>ORCT3_MOUSE (Q6A4L0) Organic cation transporter-like 3 (Solute carrier family| 22 member 13) Length = 551 Score = 38.5 bits (88), Expect = 0.004 Identities = 22/87 (25%), Positives = 36/87 (41%) Frame = -1 Query: 403 TCTAFNVIMMYSIELFPTSVRNSAVGLVRQXXXXXXXXXXXXXXXGRERXXXXXXXXXXX 224 + AF + +Y+ EL+PT +R + +GLV + Sbjct: 429 SAAAFTISYVYTAELYPTIIRQTGMGLVSIFSRVGGIITPLVMLLEQYHQAIPMVIFGSL 488 Query: 223 XGCFGMFAACLPETRGKGMSDTMDEEE 143 G+ A LPETRG+ + DT+ + E Sbjct: 489 PIGAGLLCALLPETRGQTLKDTLQDLE 515
>KNOB_PLAFA (P13817) Knob-associated histidine-rich protein precursor (KAHRP)| (HRPI) (Fragment) Length = 473 Score = 32.0 bits (71), Expect = 0.36 Identities = 17/52 (32%), Positives = 22/52 (42%) Frame = +2 Query: 245 RQKAPLAAQRDEHRRRHASQHQRLPYQPHRRVSHGRREQLDGVHHNDVERRA 400 R K LA ++ EH H QHQ PH+ H HH +V +A Sbjct: 51 RNKRTLAQKQHEHHHHHHHQHQHQHQAPHQAHHHH--------HHGEVNHQA 94
>KNOB_PLAFG (P09346) Knob-associated histidine-rich protein precursor (KAHRP)| (KP) Length = 634 Score = 32.0 bits (71), Expect = 0.36 Identities = 17/52 (32%), Positives = 22/52 (42%) Frame = +2 Query: 245 RQKAPLAAQRDEHRRRHASQHQRLPYQPHRRVSHGRREQLDGVHHNDVERRA 400 R K LA ++ EH H QHQ PH+ H HH +V +A Sbjct: 51 RNKRTLAQKQHEHHHHHHHQHQHQHQAPHQAHHHH--------HHGEVNHQA 94
>S22A4_HUMAN (Q9H015) Organic cation/carnitine transporter 1 (Solute carrier| family 22 member 4) (Ergothioneine transporter) (ET transporter) Length = 551 Score = 31.6 bits (70), Expect = 0.47 Identities = 18/83 (21%), Positives = 34/83 (40%) Frame = -1 Query: 397 TAFNVIMMYSIELFPTSVRNSAVGLVRQXXXXXXXXXXXXXXXGRERXXXXXXXXXXXXG 218 +AF+++ +++ EL+PT VRN AVG+ G Sbjct: 439 SAFSMLYVFTAELYPTLVRNMAVGVTSTASRVGSIIAPYFVYLGAYNRMLPYIVMGSLTV 498 Query: 217 CFGMFAACLPETRGKGMSDTMDE 149 G+ PE+ G + +T+++ Sbjct: 499 LIGILTLFFPESLGMTLPETLEQ 521
>S22A4_RAT (Q9R141) Organic cation/carnitine transporter 1 (Solute carrier| family 22 member 4) Length = 553 Score = 31.6 bits (70), Expect = 0.47 Identities = 12/25 (48%), Positives = 21/25 (84%) Frame = -1 Query: 397 TAFNVIMMYSIELFPTSVRNSAVGL 323 +AF+++ +++ EL+PT VRN AVG+ Sbjct: 441 SAFSMLYVFTAELYPTLVRNMAVGI 465
>S22A4_MOUSE (Q9Z306) Organic cation/carnitine transporter 1 (Solute carrier| family 22 member 4) Length = 553 Score = 31.6 bits (70), Expect = 0.47 Identities = 12/25 (48%), Positives = 21/25 (84%) Frame = -1 Query: 397 TAFNVIMMYSIELFPTSVRNSAVGL 323 +AF+++ +++ EL+PT VRN AVG+ Sbjct: 441 SAFSMLYVFTAELYPTLVRNMAVGI 465
>S22A5_HUMAN (O76082) Organic cation/carnitine transporter 2 (Solute carrier| family 22 member 5) (High-affinity sodium-dependent carnitine cotransporter) Length = 557 Score = 31.2 bits (69), Expect = 0.62 Identities = 12/24 (50%), Positives = 19/24 (79%) Frame = -1 Query: 394 AFNVIMMYSIELFPTSVRNSAVGL 323 AF+++ +Y+ EL+PT VRN VG+ Sbjct: 442 AFSMVYVYTAELYPTVVRNMGVGV 465
>LRP8_MOUSE (Q924X6) Low-density lipoprotein receptor-related protein 8| precursor (Apolipoprotein E receptor 2) Length = 996 Score = 30.4 bits (67), Expect = 1.1 Identities = 19/68 (27%), Positives = 29/68 (42%), Gaps = 5/68 (7%) Frame = +3 Query: 57 YINPQFNYTRPLLQSASLTVQAATVAXXXXXXX-----XXXDMPFPRVSGRQAANMPKQP 221 Y PQ T L + + TV A T A + P + + N+P+ P Sbjct: 768 YRAPQSTSTTTLASAMTRTVPATTRAPGTTIHDPTYQNHSTETPSQTAAAPHSVNVPRAP 827 Query: 222 TTSPNTPN 245 +TSP+TP+ Sbjct: 828 STSPSTPS 835
>YJDP_SHIDS (Q329H0) Hypothetical protein yjdP precursor| Length = 109 Score = 30.4 bits (67), Expect = 1.1 Identities = 18/43 (41%), Positives = 21/43 (48%), Gaps = 1/43 (2%) Frame = +2 Query: 272 RDEHRRRHASQHQRLPYQPHRRVSHGRREQLDGVHHN-DVERR 397 RD+ +R S +R Y RR RR QLD H D ERR Sbjct: 52 RDDGWQREVSDDRRRQYDDRRRQFEDRRRQLDDRQHQLDQERR 94
>LRRC7_MOUSE (Q80TE7) Leucine-rich repeat-containing protein 7 (LAP1 protein)| (Densin-180) Length = 1490 Score = 30.4 bits (67), Expect = 1.1 Identities = 15/31 (48%), Positives = 20/31 (64%) Frame = +2 Query: 2 SNVLRPGGSLLDWNGNNFVHQPAV*LHEAAV 94 SN+L+PG +L NG++FVH HE AV Sbjct: 1444 SNLLQPGDKILQANGHSFVHME----HEKAV 1470
>S22A5_RAT (O70594) Organic cation/carnitine transporter 2 (Solute carrier| family 22 member 5) (High-affinity sodium-dependent carnitine cotransporter) (UST2r) (CT1) Length = 557 Score = 30.4 bits (67), Expect = 1.1 Identities = 11/25 (44%), Positives = 20/25 (80%) Frame = -1 Query: 397 TAFNVIMMYSIELFPTSVRNSAVGL 323 +A++++ +Y+ EL+PT VRN VG+ Sbjct: 441 SAYSMVYVYTAELYPTVVRNMGVGV 465
>S22A5_MOUSE (Q9Z0E8) Organic cation/carnitine transporter 2 (Solute carrier| family 22 member 5) (High-affinity sodium-dependent carnitine cotransporter) Length = 557 Score = 30.4 bits (67), Expect = 1.1 Identities = 11/25 (44%), Positives = 20/25 (80%) Frame = -1 Query: 397 TAFNVIMMYSIELFPTSVRNSAVGL 323 +A++++ +Y+ EL+PT VRN VG+ Sbjct: 441 SAYSMVYVYTAELYPTVVRNMGVGV 465
>OCTN3_MOUSE (Q9WTN6) Organic cation/carnitine transporter 3 (Solute carrier| family 22 member 21) (Solute carrier family 22 member 9) Length = 564 Score = 30.4 bits (67), Expect = 1.1 Identities = 11/25 (44%), Positives = 20/25 (80%) Frame = -1 Query: 397 TAFNVIMMYSIELFPTSVRNSAVGL 323 +A++++ +Y+ EL+PT VRN VG+ Sbjct: 444 SAYSMVYVYTAELYPTVVRNMGVGV 468
>LRRC7_HUMAN (Q96NW7) Leucine-rich repeat-containing protein 7 (LAP1 protein)| (Densin-180) Length = 1537 Score = 30.4 bits (67), Expect = 1.1 Identities = 15/31 (48%), Positives = 20/31 (64%) Frame = +2 Query: 2 SNVLRPGGSLLDWNGNNFVHQPAV*LHEAAV 94 SN+L+PG +L NG++FVH HE AV Sbjct: 1491 SNLLQPGDKILQANGHSFVHME----HEKAV 1517
>LRRC7_RAT (P70587) Leucine-rich repeat-containing protein 7 (LAP1 protein)| (Densin-180) Length = 1495 Score = 30.4 bits (67), Expect = 1.1 Identities = 15/31 (48%), Positives = 20/31 (64%) Frame = +2 Query: 2 SNVLRPGGSLLDWNGNNFVHQPAV*LHEAAV 94 SN+L+PG +L NG++FVH HE AV Sbjct: 1449 SNLLQPGDKILQANGHSFVHME----HEKAV 1475
>YAAU_ECOLI (P31679) Hypothetical metabolite transport protein yaaU| Length = 443 Score = 28.9 bits (63), Expect = 3.1 Identities = 12/23 (52%), Positives = 17/23 (73%) Frame = -1 Query: 388 NVIMMYSIELFPTSVRNSAVGLV 320 N+ +Y ELFPT +R SAVG++ Sbjct: 353 NLQWLYPNELFPTDIRASAVGVI 375
>YJDP_ECO57 (Q8X3J8) Hypothetical protein yjdP precursor| Length = 109 Score = 28.5 bits (62), Expect = 4.0 Identities = 17/43 (39%), Positives = 21/43 (48%), Gaps = 1/43 (2%) Frame = +2 Query: 272 RDEHRRRHASQHQRLPYQPHRRVSHGRREQLDGVHHN-DVERR 397 RD+ +R S +R Y RR RR QLD H + ERR Sbjct: 52 RDDGWQREVSDDRRRQYDDRRRQFEDRRRQLDDRQHQLNQERR 94
>CAC1F_MOUSE (Q9JIS7) Voltage-dependent L-type calcium channel alpha-1F subunit| (Voltage-gated calcium channel alpha subunit Cav1.4) Length = 1985 Score = 28.5 bits (62), Expect = 4.0 Identities = 12/29 (41%), Positives = 19/29 (65%) Frame = -1 Query: 199 ACLPETRGKGMSDTMDEEEHKEATVAACT 113 A LP + M+DT +E+ +E T+A+CT Sbjct: 468 ASLPASDTGSMTDTPGDEDEEEGTMASCT 496
>DTX_DROME (Q23985) Protein deltex| Length = 738 Score = 28.1 bits (61), Expect = 5.2 Identities = 14/49 (28%), Positives = 24/49 (48%), Gaps = 4/49 (8%) Frame = +2 Query: 245 RQKAPLAAQRDEHRRRHASQHQRLPYQ----PHRRVSHGRREQLDGVHH 379 RQ+ PL +++H QHQ+ Q H++ H +++Q HH Sbjct: 250 RQQHPLPTSHQVQQQQHQHQHQQQQQQQHHHQHQQQQHQQQQQHQMQHH 298
>KNOB_PLAFN (P06719) Knob-associated histidine-rich protein precursor (KAHRP)| Length = 657 Score = 27.7 bits (60), Expect = 6.8 Identities = 14/52 (26%), Positives = 19/52 (36%) Frame = +2 Query: 245 RQKAPLAAQRDEHRRRHASQHQRLPYQPHRRVSHGRREQLDGVHHNDVERRA 400 R K LA ++ EH H H PH+ HH +V +A Sbjct: 51 RNKRTLAQKQHEHHHHHHHHHHHQHQAPHQAPHQAHHHH----HHGEVNHQA 98
>OMB_DROME (Q24432) Optomotor-blind protein (Lethal(1)optomotor-blind)| (L(1)omb) (Protein bifid) Length = 972 Score = 27.7 bits (60), Expect = 6.8 Identities = 9/21 (42%), Positives = 13/21 (61%) Frame = +2 Query: 269 QRDEHRRRHASQHQRLPYQPH 331 Q+ +H+ H QH + P QPH Sbjct: 932 QQQQHQSHHQQQHHQQPAQPH 952
>HSP1_ANTLA (O18745) Sperm protamine P1| Length = 61 Score = 27.7 bits (60), Expect = 6.8 Identities = 15/40 (37%), Positives = 18/40 (45%) Frame = +2 Query: 284 RRRHASQHQRLPYQPHRRVSHGRREQLDGVHHNDVERRAR 403 RRR + H R Y+ RR S RR + G RR R Sbjct: 19 RRRRSRHHNRRTYRRSRRHSRRRRGRRRGYSRRRYSRRGR 58
>GLYG4_SOYBN (P02858) Glycinin G4 precursor [Contains: Glycinin A5 subunit;| Glycinin A4 subunit; Glycinin B3 subunit] Length = 562 Score = 27.7 bits (60), Expect = 6.8 Identities = 11/31 (35%), Positives = 18/31 (58%) Frame = +2 Query: 269 QRDEHRRRHASQHQRLPYQPHRRVSHGRREQ 361 Q ++ + +++P P RR SHG+REQ Sbjct: 280 QDEDEDEDEDDEDEQIPSHPPRRPSHGKREQ 310
>MYCT_RAT (Q921A2) Proton myo-inositol cotransporter (H(+)-myo-inositol| cotransporter) (Hmit) Length = 618 Score = 27.3 bits (59), Expect = 8.9 Identities = 13/37 (35%), Positives = 19/37 (51%) Frame = -1 Query: 196 CLPETRGKGMSDTMDEEEHKEATVAACTVNDADCNSG 86 CLPET+GK + + +H+ CT AD + G Sbjct: 563 CLPETKGKKLEEIESLFDHR-----LCTCGTADSDEG 594
>YJDP_SHISS (Q3YUQ0) Hypothetical protein yjdP precursor| Length = 109 Score = 27.3 bits (59), Expect = 8.9 Identities = 17/43 (39%), Positives = 20/43 (46%), Gaps = 1/43 (2%) Frame = +2 Query: 272 RDEHRRRHASQHQRLPYQPHRRVSHGRREQLDGVHHN-DVERR 397 RD+ +R S +R Y RR RR QLD D ERR Sbjct: 52 RDDGWQREVSDDRRRQYDDRRRQFEDRRRQLDDRQRQLDQERR 94
>YJDP_SHIBS (Q31TR2) Hypothetical protein yjdP precursor| Length = 109 Score = 27.3 bits (59), Expect = 8.9 Identities = 17/43 (39%), Positives = 20/43 (46%), Gaps = 1/43 (2%) Frame = +2 Query: 272 RDEHRRRHASQHQRLPYQPHRRVSHGRREQLDGVHHN-DVERR 397 RD+ +R S +R Y RR RR QLD D ERR Sbjct: 52 RDDGWQREVSDDRRRQYDDRRRQFEDRRRQLDDRQRQLDQERR 94
>YJDP_ECOLI (Q6BEX5) Hypothetical protein yjdP precursor| Length = 109 Score = 27.3 bits (59), Expect = 8.9 Identities = 17/43 (39%), Positives = 20/43 (46%), Gaps = 1/43 (2%) Frame = +2 Query: 272 RDEHRRRHASQHQRLPYQPHRRVSHGRREQLDGVHHN-DVERR 397 RD+ +R S +R Y RR RR QLD D ERR Sbjct: 52 RDDGWQREVSDDRRRQYDDRRRQFEDRRRQLDDRQRQLDQERR 94
>YJDP_ECOL6 (Q8FAW3) Hypothetical protein yjdP precursor| Length = 109 Score = 27.3 bits (59), Expect = 8.9 Identities = 17/43 (39%), Positives = 20/43 (46%), Gaps = 1/43 (2%) Frame = +2 Query: 272 RDEHRRRHASQHQRLPYQPHRRVSHGRREQLDGVHHN-DVERR 397 RD+ +R S +R Y RR RR QLD D ERR Sbjct: 52 RDDGWQREVSDDRRRQYDDRRRQFEDRRRQLDDRQRQLDQERR 94
>K0427_HUMAN (O43310) Protein KIAA0427| Length = 598 Score = 27.3 bits (59), Expect = 8.9 Identities = 12/38 (31%), Positives = 20/38 (52%) Frame = +2 Query: 281 HRRRHASQHQRLPYQPHRRVSHGRREQLDGVHHNDVER 394 HR+ + Q LP+ G+ E DG++ ND+E+ Sbjct: 126 HRKVRHTPKQPLPHIDREGCGKGKLEDGDGINLNDIEK 163
>SCNNB_XENLA (P51169) Amiloride-sensitive sodium channel beta-subunit| (Epithelial Na+ channel beta subunit) (Beta ENaC) (Nonvoltage-gated sodium channel 1 beta subunit) (SCNEB) (Beta NaCH) Length = 647 Score = 27.3 bits (59), Expect = 8.9 Identities = 15/38 (39%), Positives = 23/38 (60%) Frame = -1 Query: 211 GMFAACLPETRGKGMSDTMDEEEHKEATVAACTVNDAD 98 G++A ET +S +D+ EH EA ++CTVN +D Sbjct: 353 GIYAMPGTET---SISVLVDQLEHMEAPYSSCTVNGSD 387 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 36,906,936 Number of Sequences: 219361 Number of extensions: 513130 Number of successful extensions: 1729 Number of sequences better than 10.0: 34 Number of HSP's better than 10.0 without gapping: 1671 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 1723 length of database: 80,573,946 effective HSP length: 109 effective length of database: 56,663,597 effective search space used: 1359926328 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
