ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbart23c07
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1MYB4_ORYSA (Q7XBH4) Myb-related protein Myb4 (OsMyb4) (Transcrip... 47 2e-05
2REV_HV1BN (P12485) REV protein (Anti-repression transactivator p... 32 0.63
3REV_HV1OY (P20887) REV protein (Anti-repression transactivator p... 29 5.3
4REV_HV1A2 (P04623) REV protein (Anti-repression transactivator p... 29 5.3
5REV_HV1SC (P05872) REV protein (Anti-repression transactivator p... 28 9.1

>MYB4_ORYSA (Q7XBH4) Myb-related protein Myb4 (OsMyb4) (Transcription factor|
           RLTR1)
          Length = 257

 Score = 47.0 bits (110), Expect = 2e-05
 Identities = 32/63 (50%), Positives = 33/63 (52%), Gaps = 2/63 (3%)
 Frame = -1

Query: 470 ETLSMPLDDLNDVCMEPHDAFGKPDG--DMDYWLRLFMEXXXXXXXXXXXXXXXXGALDL 297
           ETLSMPLD   DV MEP DAF  P    DMDYWL +FME                 A DL
Sbjct: 210 ETLSMPLDGY-DVSMEPGDAFVAPPSADDMDYWLGVFME--------------SGEAQDL 254

Query: 296 PQI 288
           PQI
Sbjct: 255 PQI 257



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>REV_HV1BN (P12485) REV protein (Anti-repression transactivator protein)|
           (ART/TRS) (Fragment)
          Length = 106

 Score = 32.3 bits (72), Expect = 0.63
 Identities = 14/41 (34%), Positives = 24/41 (58%)
 Frame = +1

Query: 97  NQNGSKKATRRMISVLAGWLLVSSTGRAGNSSLLAIPPMQR 219
           N+    +A +R I  L+GW+L +  GR+     L +PP++R
Sbjct: 30  NRRRRWRARQRQIQSLSGWILSTFLGRSAEPVPLQLPPLER 70



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>REV_HV1OY (P20887) REV protein (Anti-repression transactivator protein)|
           (ART/TRS)
          Length = 116

 Score = 29.3 bits (64), Expect = 5.3
 Identities = 12/41 (29%), Positives = 23/41 (56%)
 Frame = +1

Query: 97  NQNGSKKATRRMISVLAGWLLVSSTGRAGNSSLLAIPPMQR 219
           N+    +  +R I  ++GW+L +  GR+     L +PP++R
Sbjct: 40  NRRRRWRERQRQIRKISGWILSTYLGRSAEPVPLQLPPLER 80



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>REV_HV1A2 (P04623) REV protein (Anti-repression transactivator protein)|
           (ART/TRS)
          Length = 116

 Score = 29.3 bits (64), Expect = 5.3
 Identities = 12/41 (29%), Positives = 23/41 (56%)
 Frame = +1

Query: 97  NQNGSKKATRRMISVLAGWLLVSSTGRAGNSSLLAIPPMQR 219
           N+    +  +R I  ++GW+L +  GR+     L +PP++R
Sbjct: 40  NRRRRWRERQRQIRSISGWILSTYLGRSAEPVPLQLPPLER 80



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>REV_HV1SC (P05872) REV protein (Anti-repression transactivator protein)|
           (ART/TRS)
          Length = 116

 Score = 28.5 bits (62), Expect = 9.1
 Identities = 12/41 (29%), Positives = 22/41 (53%)
 Frame = +1

Query: 97  NQNGSKKATRRMISVLAGWLLVSSTGRAGNSSLLAIPPMQR 219
           N+    +  +R I  ++GW+L +  GR      L +PP++R
Sbjct: 40  NRRRRWRERQRQIRSISGWILSNYLGRLAEPVPLQLPPLER 80


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 55,238,403
Number of Sequences: 219361
Number of extensions: 931651
Number of successful extensions: 2170
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 2113
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2162
length of database: 80,573,946
effective HSP length: 103
effective length of database: 57,979,763
effective search space used: 3072927439
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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