ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbart23c05
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1LIPA_RHOBA (Q7UH37) Lipoyl synthase (EC 2.8.1.-) (Lipoic acid sy... 29 5.0
2SCC2_ASHGO (Q750S2) Sister chromatid cohesion protein 2 28 8.6

>LIPA_RHOBA (Q7UH37) Lipoyl synthase (EC 2.8.1.-) (Lipoic acid synthase)|
           (Lipoate synthase) (Lipoyl-acyl-carrier protein
           synthase) (Sulfur insertion protein lipA) (Lip-syn)
          Length = 316

 Score = 29.3 bits (64), Expect = 5.0
 Identities = 12/30 (40%), Positives = 21/30 (70%)
 Frame = -2

Query: 200 EEQGKVHSSLSEILKQDDSFRSVGAYLLPG 111
           EE+G++  +LS++ + D  F ++G YL PG
Sbjct: 238 EERGELLDALSDLREHDVDFLTLGQYLQPG 267



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>SCC2_ASHGO (Q750S2) Sister chromatid cohesion protein 2|
          Length = 1479

 Score = 28.5 bits (62), Expect = 8.6
 Identities = 16/35 (45%), Positives = 21/35 (60%), Gaps = 2/35 (5%)
 Frame = -3

Query: 214  MNTNMRNRGKYIPVFQK--F*NKTIHSVPWELICY 116
            M+TN RNR K++ V +K  F N    SV +E  CY
Sbjct: 1305 MSTNKRNRSKFLKVVKKTVFSNYLSTSVNYEESCY 1339


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 64,538,221
Number of Sequences: 219361
Number of extensions: 1241326
Number of successful extensions: 2198
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 2149
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2198
length of database: 80,573,946
effective HSP length: 102
effective length of database: 58,199,124
effective search space used: 2909956200
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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