ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbart23c04
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1ACOX1_ARATH (O65202) Acyl-coenzyme A oxidase 1, peroxisomal (EC ... 42 0.001
2ACO12_ARATH (Q9ZQP2) Putative acyl-coenzyme A oxidase 1.2, perox... 40 0.003
3OLP1_LYCES (Q41350) Osmotin-like protein precursor 30 3.5
4TLP2_PRUPE (P83335) Thaumatin-like protein 2 precursor (PpAZ8) 29 6.0
5PR28_MYCTU (P0A5Q6) Proline-rich 28 kDa antigen precursor 29 7.8
6PR28_MYCBO (P0A5Q7) Proline-rich 28 kDa antigen precursor 29 7.8

>ACOX1_ARATH (O65202) Acyl-coenzyme A oxidase 1, peroxisomal (EC 1.3.3.6) (AOX|
           1) (Long-chain acyl-CoA oxidase) (AtCX1)
          Length = 664

 Score = 41.6 bits (96), Expect = 0.001
 Identities = 17/22 (77%), Positives = 21/22 (95%)
 Frame = -3

Query: 490 LYEEAWKDPLNETVVPDGYQEH 425
           L+EEA KDPLN++VVPDGYQE+
Sbjct: 629 LFEEALKDPLNDSVVPDGYQEY 650



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>ACO12_ARATH (Q9ZQP2) Putative acyl-coenzyme A oxidase 1.2, peroxisomal (EC|
           1.3.3.6)
          Length = 664

 Score = 40.0 bits (92), Expect = 0.003
 Identities = 16/22 (72%), Positives = 21/22 (95%)
 Frame = -3

Query: 490 LYEEAWKDPLNETVVPDGYQEH 425
           L+EEA KDPLN++VVPDGY+E+
Sbjct: 629 LFEEALKDPLNDSVVPDGYREY 650



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>OLP1_LYCES (Q41350) Osmotin-like protein precursor|
          Length = 252

 Score = 30.0 bits (66), Expect = 3.5
 Identities = 17/39 (43%), Positives = 22/39 (56%), Gaps = 1/39 (2%)
 Frame = -1

Query: 348 SMLDSGCGAVINKRIKS-RGEVIGCCSLCWKGKSDRHCC 235
           ++L+S C AV+  R     G V+GC S C   KSD  CC
Sbjct: 163 NLLES-CPAVLQFRSHGGHGPVVGCKSACEAFKSDEFCC 200



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>TLP2_PRUPE (P83335) Thaumatin-like protein 2 precursor (PpAZ8)|
          Length = 242

 Score = 29.3 bits (64), Expect = 6.0
 Identities = 21/67 (31%), Positives = 30/67 (44%), Gaps = 17/67 (25%)
 Frame = -1

Query: 384 YDPSLVPE-SVPQSMLDSG---------CGAVIN-------KRIKSRGEVIGCCSLCWKG 256
           YD SLV   ++P S+   G         C A +N       ++I S G V+ C S C K 
Sbjct: 124 YDVSLVDGFNLPMSVTPQGGTGTCKMGSCAANVNLVCPSELQKIGSDGSVVACLSACVKF 183

Query: 255 KSDRHCC 235
              ++CC
Sbjct: 184 GEPQYCC 190



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>PR28_MYCTU (P0A5Q6) Proline-rich 28 kDa antigen precursor|
          Length = 310

 Score = 28.9 bits (63), Expect = 7.8
 Identities = 20/65 (30%), Positives = 27/65 (41%)
 Frame = +1

Query: 181 QMLINYPGGSKNPFILLPTTVPVALAFPTK*TTTNHLSP*FDPLINYCSTSAVQHGLGDR 360
           Q L   PGGS N F   P   P+A   P     +  + P   P+     T A+   L D 
Sbjct: 55  QNLTALPGGSSNRFSPAPAPAPIASPIPVGAPGSTAVPPLPPPV-----TPAISGTLRDH 109

Query: 361 FRDQG 375
            R++G
Sbjct: 110 LREKG 114



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>PR28_MYCBO (P0A5Q7) Proline-rich 28 kDa antigen precursor|
          Length = 310

 Score = 28.9 bits (63), Expect = 7.8
 Identities = 20/65 (30%), Positives = 27/65 (41%)
 Frame = +1

Query: 181 QMLINYPGGSKNPFILLPTTVPVALAFPTK*TTTNHLSP*FDPLINYCSTSAVQHGLGDR 360
           Q L   PGGS N F   P   P+A   P     +  + P   P+     T A+   L D 
Sbjct: 55  QNLTALPGGSSNRFSPAPAPAPIASPIPVGAPGSTAVPPLPPPV-----TPAISGTLRDH 109

Query: 361 FRDQG 375
            R++G
Sbjct: 110 LREKG 114


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 62,932,138
Number of Sequences: 219361
Number of extensions: 1117710
Number of successful extensions: 2558
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 2498
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2558
length of database: 80,573,946
effective HSP length: 103
effective length of database: 57,979,763
effective search space used: 3478785780
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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