Clone Name | rbart23c03 |
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Clone Library Name | barley_pub |
No. | Definition | Score (bits) |
E Value |
1 | S26A1_RAT (P45380) Sulfate anion transporter 1 (SAT-1) (Solute c... | 32 | 0.55 | 2 | JHD3B_HUMAN (O94953) JmjC domain-containing histone demethylatio... | 29 | 6.0 | 3 | JHD3B_MOUSE (Q91VY5) JmjC domain-containing histone demethylatio... | 29 | 6.0 |
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>S26A1_RAT (P45380) Sulfate anion transporter 1 (SAT-1) (Solute carrier family| 26 member 1) (Canalicular sulfate transporter) (Sulfate/carbonate antiporter) Length = 703 Score = 32.3 bits (72), Expect = 0.55 Identities = 21/51 (41%), Positives = 26/51 (50%), Gaps = 1/51 (1%) Frame = +3 Query: 198 HANVYNFYILCVFQGQ-VSMPFQLLGFPTHSELLNPGDGLT*THSSLNATA 347 H NV F +LC+ GQ V QL GF + L PG+ S+LN TA Sbjct: 120 HVNVGIFSLLCLMVGQVVDRELQLAGFDPSQDSLGPGN----NDSTLNNTA 166
>JHD3B_HUMAN (O94953) JmjC domain-containing histone demethylation protein 3B| (EC 1.14.11.-) (Jumonji domain-containing protein 2B) Length = 1096 Score = 28.9 bits (63), Expect = 6.0 Identities = 31/130 (23%), Positives = 51/130 (39%), Gaps = 5/130 (3%) Frame = +2 Query: 35 NGHVVRSFSWG*YPGDMYTCCQVRSFVKKLLCSL*ANKYTIITSYVS*LGSTFGARKCIQ 214 +G + + G +PG C L+ + KY I S ++ F Sbjct: 216 HGKRLERLAIGFFPGSSQGCDAFLRHKMTLISPIILKKYGIPFSRITQEAGEF------- 268 Query: 215 FLHLMCFPRAGEHAIPAAGISYTFRATESW-----RWLDINTLQFECYCTK*MQLCKSLW 379 ++ FP G HA G ++ F ES RW+D + +C C K M + Sbjct: 269 ---MITFPY-GYHA----GFNHGFNCAESTNFATLRWIDYGKVATQCTCRKDM---VKIS 317 Query: 380 LDVWTAIIEP 409 +DV+ I++P Sbjct: 318 MDVFVRILQP 327
>JHD3B_MOUSE (Q91VY5) JmjC domain-containing histone demethylation protein 3B| (EC 1.14.11.-) (Jumonji domain-containing protein 2B) Length = 1086 Score = 28.9 bits (63), Expect = 6.0 Identities = 31/130 (23%), Positives = 51/130 (39%), Gaps = 5/130 (3%) Frame = +2 Query: 35 NGHVVRSFSWG*YPGDMYTCCQVRSFVKKLLCSL*ANKYTIITSYVS*LGSTFGARKCIQ 214 +G + + G +PG C L+ + KY I S ++ F Sbjct: 216 HGKRLERLAIGFFPGSSQGCDAFLRHKMTLISPIILKKYGIPFSRITQEAGEF------- 268 Query: 215 FLHLMCFPRAGEHAIPAAGISYTFRATESW-----RWLDINTLQFECYCTK*MQLCKSLW 379 ++ FP G HA G ++ F ES RW+D + +C C K M + Sbjct: 269 ---MITFPY-GYHA----GFNHGFNCAESTNFATLRWIDYGKVATQCTCRKDM---VKIS 317 Query: 380 LDVWTAIIEP 409 +DV+ I++P Sbjct: 318 MDVFVRILQP 327 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 68,869,950 Number of Sequences: 219361 Number of extensions: 1447230 Number of successful extensions: 2770 Number of sequences better than 10.0: 3 Number of HSP's better than 10.0 without gapping: 2694 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2769 length of database: 80,573,946 effective HSP length: 102 effective length of database: 58,199,124 effective search space used: 2677159704 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)