ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbart23c03
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1S26A1_RAT (P45380) Sulfate anion transporter 1 (SAT-1) (Solute c... 32 0.55
2JHD3B_HUMAN (O94953) JmjC domain-containing histone demethylatio... 29 6.0
3JHD3B_MOUSE (Q91VY5) JmjC domain-containing histone demethylatio... 29 6.0

>S26A1_RAT (P45380) Sulfate anion transporter 1 (SAT-1) (Solute carrier family|
           26 member 1) (Canalicular sulfate transporter)
           (Sulfate/carbonate antiporter)
          Length = 703

 Score = 32.3 bits (72), Expect = 0.55
 Identities = 21/51 (41%), Positives = 26/51 (50%), Gaps = 1/51 (1%)
 Frame = +3

Query: 198 HANVYNFYILCVFQGQ-VSMPFQLLGFPTHSELLNPGDGLT*THSSLNATA 347
           H NV  F +LC+  GQ V    QL GF    + L PG+      S+LN TA
Sbjct: 120 HVNVGIFSLLCLMVGQVVDRELQLAGFDPSQDSLGPGN----NDSTLNNTA 166



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>JHD3B_HUMAN (O94953) JmjC domain-containing histone demethylation protein 3B|
           (EC 1.14.11.-) (Jumonji domain-containing protein 2B)
          Length = 1096

 Score = 28.9 bits (63), Expect = 6.0
 Identities = 31/130 (23%), Positives = 51/130 (39%), Gaps = 5/130 (3%)
 Frame = +2

Query: 35  NGHVVRSFSWG*YPGDMYTCCQVRSFVKKLLCSL*ANKYTIITSYVS*LGSTFGARKCIQ 214
           +G  +   + G +PG    C         L+  +   KY I  S ++     F       
Sbjct: 216 HGKRLERLAIGFFPGSSQGCDAFLRHKMTLISPIILKKYGIPFSRITQEAGEF------- 268

Query: 215 FLHLMCFPRAGEHAIPAAGISYTFRATESW-----RWLDINTLQFECYCTK*MQLCKSLW 379
              ++ FP  G HA    G ++ F   ES      RW+D   +  +C C K M     + 
Sbjct: 269 ---MITFPY-GYHA----GFNHGFNCAESTNFATLRWIDYGKVATQCTCRKDM---VKIS 317

Query: 380 LDVWTAIIEP 409
           +DV+  I++P
Sbjct: 318 MDVFVRILQP 327



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>JHD3B_MOUSE (Q91VY5) JmjC domain-containing histone demethylation protein 3B|
           (EC 1.14.11.-) (Jumonji domain-containing protein 2B)
          Length = 1086

 Score = 28.9 bits (63), Expect = 6.0
 Identities = 31/130 (23%), Positives = 51/130 (39%), Gaps = 5/130 (3%)
 Frame = +2

Query: 35  NGHVVRSFSWG*YPGDMYTCCQVRSFVKKLLCSL*ANKYTIITSYVS*LGSTFGARKCIQ 214
           +G  +   + G +PG    C         L+  +   KY I  S ++     F       
Sbjct: 216 HGKRLERLAIGFFPGSSQGCDAFLRHKMTLISPIILKKYGIPFSRITQEAGEF------- 268

Query: 215 FLHLMCFPRAGEHAIPAAGISYTFRATESW-----RWLDINTLQFECYCTK*MQLCKSLW 379
              ++ FP  G HA    G ++ F   ES      RW+D   +  +C C K M     + 
Sbjct: 269 ---MITFPY-GYHA----GFNHGFNCAESTNFATLRWIDYGKVATQCTCRKDM---VKIS 317

Query: 380 LDVWTAIIEP 409
           +DV+  I++P
Sbjct: 318 MDVFVRILQP 327


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 68,869,950
Number of Sequences: 219361
Number of extensions: 1447230
Number of successful extensions: 2770
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 2694
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2769
length of database: 80,573,946
effective HSP length: 102
effective length of database: 58,199,124
effective search space used: 2677159704
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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