Clone Name | rbart23c03 |
---|---|
Clone Library Name | barley_pub |
>gb|AC025294.14|AC025294 Arabidopsis thaliana chromosome 1 BAC F19C24 genomic sequence, complete sequence Length = 124511 Score = 46.1 bits (23), Expect = 0.097 Identities = 23/23 (100%) Strand = Plus / Plus Query: 3 tggtaactctttaagaaaaagaa 25 ||||||||||||||||||||||| Sbjct: 17625 tggtaactctttaagaaaaagaa 17647
>gb|AC015448.4|AC015448 Arabidopsis thaliana chromosome I BAC T14L22 genomic sequence, complete sequence Length = 95581 Score = 46.1 bits (23), Expect = 0.097 Identities = 23/23 (100%) Strand = Plus / Minus Query: 3 tggtaactctttaagaaaaagaa 25 ||||||||||||||||||||||| Sbjct: 5780 tggtaactctttaagaaaaagaa 5758
>gb|AF148542.1|AF148542 Arabidopsis thaliana cyclic nucleotide-binding transporter 2 (CNBT2) and cyclic nucleotide-binding transporter 1 (CNBT1) genes, complete cds Length = 9070 Score = 44.1 bits (22), Expect = 0.39 Identities = 22/22 (100%) Strand = Plus / Minus Query: 5 gtaactctttaagaaaaagaat 26 |||||||||||||||||||||| Sbjct: 7504 gtaactctttaagaaaaagaat 7483
>dbj|AB022219.1| Arabidopsis thaliana genomic DNA, chromosome 3, P1 clone: MKP6 Length = 83233 Score = 44.1 bits (22), Expect = 0.39 Identities = 22/22 (100%) Strand = Plus / Minus Query: 5 gtaactctttaagaaaaagaat 26 |||||||||||||||||||||| Sbjct: 72445 gtaactctttaagaaaaagaat 72424
>emb|AL607074.13| Mouse DNA sequence from clone RP23-174M9 on chromosome 4, complete sequence Length = 204428 Score = 44.1 bits (22), Expect = 0.39 Identities = 22/22 (100%) Strand = Plus / Minus Query: 211 acaatttttacatcttatgtgt 232 |||||||||||||||||||||| Sbjct: 152082 acaatttttacatcttatgtgt 152061
>ref|XM_467452.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1384 Score = 42.1 bits (21), Expect = 1.5 Identities = 45/53 (84%) Strand = Plus / Minus Query: 395 gccatcatagaaccctcaatttgagtttgtcatatccagctttcgtcttgtac 447 ||||||||||||| || || | ||| ||| |||||||||||| ||||||||| Sbjct: 1050 gccatcatagaactcttaaatggaggttgggatatccagctttagtcttgtac 998
>gb|AC124716.4| Mus musculus BAC clone RP24-144K17 from chromosome 19, complete sequence Length = 194362 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 177 agcttgggagcacttttggag 197 ||||||||||||||||||||| Sbjct: 192583 agcttgggagcacttttggag 192563
>gb|AC126795.4| Mus musculus BAC clone RP24-576D17 from chromosome 19, complete sequence Length = 183031 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 177 agcttgggagcacttttggag 197 ||||||||||||||||||||| Sbjct: 138719 agcttgggagcacttttggag 138739
>gb|AC121927.2| Mus musculus BAC clone RP24-202N20 from 10, complete sequence Length = 164073 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 211 acaatttttacatcttatgtg 231 ||||||||||||||||||||| Sbjct: 108651 acaatttttacatcttatgtg 108671
>emb|AL132825.35|HSDJ756N5 Human DNA sequence from clone RP4-756N5 on chromosome 20q11.21-12 Contains the MYH7B gene for myosin heavy polypeptide 7B (cardiac muscle) beta, the C20orf188 gene for a novel protein similar to Trp4-associated protein TAP1 (ABCB2) and two CpG islands, complete sequence Length = 123782 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 316 cataaacacactccagtttga 336 ||||||||||||||||||||| Sbjct: 98001 cataaacacactccagtttga 98021
>gb|AC090512.3|AC090512 Homo sapiens chromosome 15 clone RP11-134K12 map 15q21.1, complete sequence Length = 161737 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 111 ttgtgaagaagctactttgtt 131 ||||||||||||||||||||| Sbjct: 64076 ttgtgaagaagctactttgtt 64056
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 42.1 bits (21), Expect = 1.5 Identities = 45/53 (84%) Strand = Plus / Plus Query: 395 gccatcatagaaccctcaatttgagtttgtcatatccagctttcgtcttgtac 447 ||||||||||||| || || | ||| ||| |||||||||||| ||||||||| Sbjct: 29617994 gccatcatagaactcttaaatggaggttgggatatccagctttagtcttgtac 29618046
>gb|AC092162.3| Homo sapiens BAC clone RP11-632P5 from 2, complete sequence Length = 155011 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 8 actctttaagaaaaagaattt 28 ||||||||||||||||||||| Sbjct: 103301 actctttaagaaaaagaattt 103321
>dbj|AP004165.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OJ1479_B12 Length = 127089 Score = 42.1 bits (21), Expect = 1.5 Identities = 45/53 (84%) Strand = Plus / Plus Query: 395 gccatcatagaaccctcaatttgagtttgtcatatccagctttcgtcttgtac 447 ||||||||||||| || || | ||| ||| |||||||||||| ||||||||| Sbjct: 75715 gccatcatagaactcttaaatggaggttgggatatccagctttagtcttgtac 75767
>dbj|AK071194.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023087O16, full insert sequence Length = 1383 Score = 42.1 bits (21), Expect = 1.5 Identities = 45/53 (84%) Strand = Plus / Minus Query: 395 gccatcatagaaccctcaatttgagtttgtcatatccagctttcgtcttgtac 447 ||||||||||||| || || | ||| ||| |||||||||||| ||||||||| Sbjct: 1049 gccatcatagaactcttaaatggaggttgggatatccagctttagtcttgtac 997
>gb|AE017345.1| Cryptococcus neoformans var. neoformans JEC21 chromosome 5, complete sequence Length = 1507550 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 62 tggggttaataccctggcga 81 |||||||||||||||||||| Sbjct: 108056 tggggttaataccctggcga 108037
>gb|AC091454.2| Mus musculus chromosome X, clones RP21-438P10, RP21-382F2, RP21-118B24, Map qA7.1, complete sequences Length = 393632 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 6 taactctttaagaaaaagaa 25 |||||||||||||||||||| Sbjct: 265155 taactctttaagaaaaagaa 265174
>gb|AC133459.9| Mus musculus chromosome 12, clone RP23-383O15, complete sequence Length = 227171 Score = 40.1 bits (20), Expect = 6.0 Identities = 23/24 (95%) Strand = Plus / Minus Query: 5 gtaactctttaagaaaaagaattt 28 |||| ||||||||||||||||||| Sbjct: 195961 gtaaatctttaagaaaaagaattt 195938
>ref|XM_571126.1| Cryptococcus neoformans var. neoformans JEC21 hypothetical protein (CNE00420) partial mRNA Length = 2839 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 62 tggggttaataccctggcga 81 |||||||||||||||||||| Sbjct: 1613 tggggttaataccctggcga 1632
>gb|AC005017.1| Homo sapiens BAC clone GS1-214N13 from 7, complete sequence Length = 137176 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 7 aactctttaagaaaaagaat 26 |||||||||||||||||||| Sbjct: 40040 aactctttaagaaaaagaat 40021
>emb|AL592064.14| Human DNA sequence from clone RP11-111D20 on chromosome 1 Contains the PAFAH2 gene for platelet-activating factor acetylhydrolase 2 40kDa, complete sequence Length = 93210 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 9 ctctttaagaaaaagaattt 28 |||||||||||||||||||| Sbjct: 78726 ctctttaagaaaaagaattt 78745
>emb|AL391989.9| Human DNA sequence from clone RP11-388E20 on chromosome 13 Contains a ribosomal protein L31 (RPL31) pseudogene, complete sequence Length = 167496 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 225 ttatgtgttttccaagggca 244 |||||||||||||||||||| Sbjct: 157114 ttatgtgttttccaagggca 157133
>emb|CR450808.5| Zebrafish DNA sequence from clone DKEYP-55H4 in linkage group 25, complete sequence Length = 169887 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 248 gagcatgccattccagctgc 267 |||||||||||||||||||| Sbjct: 140198 gagcatgccattccagctgc 140179
>gb|AC124657.5| Homo sapiens chromosome 11, clone RP11-624D11, complete sequence Length = 155985 Score = 40.1 bits (20), Expect = 6.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 123 tactttgttctttatgagcaaaca 146 ||||||||||||||||| |||||| Sbjct: 114708 tactttgttctttatgaacaaaca 114731
>gb|AC160936.2| Mus musculus BAC clone RP23-300E17 from chromosome 12, complete sequence Length = 198897 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 201 gcaaatgtatacaattttta 220 |||||||||||||||||||| Sbjct: 93966 gcaaatgtatacaattttta 93985
>emb|BX323858.12| Zebrafish DNA sequence from clone DKEY-102F10 in linkage group 14, complete sequence Length = 184463 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 140 gcaaacaaatacacaatcat 159 |||||||||||||||||||| Sbjct: 142996 gcaaacaaatacacaatcat 143015
>emb|BX855604.5| Zebrafish DNA sequence from clone CH211-284P4, complete sequence Length = 152761 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 248 gagcatgccattccagctgc 267 |||||||||||||||||||| Sbjct: 65606 gagcatgccattccagctgc 65587
>gb|AC074019.7| Homo sapiens BAC clone RP11-271M11 from 2, complete sequence Length = 127559 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 10 tctttaagaaaaagaatttg 29 |||||||||||||||||||| Sbjct: 12914 tctttaagaaaaagaatttg 12933
>gb|AC148599.2| Xenopus tropicalis clone CH216-2G20, complete sequence Length = 206059 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 145 caaatacacaatcattacat 164 |||||||||||||||||||| Sbjct: 151483 caaatacacaatcattacat 151502
>gb|AC098645.3| Papio anubis clone RP41-470J23, complete sequence Length = 193317 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 7 aactctttaagaaaaagaat 26 |||||||||||||||||||| Sbjct: 180304 aactctttaagaaaaagaat 180285
>gb|AC098698.3| Papio anubis clone RP41-177A23, complete sequence Length = 165334 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 7 aactctttaagaaaaagaat 26 |||||||||||||||||||| Sbjct: 20378 aactctttaagaaaaagaat 20359
>gb|AC004827.1|AC004827 Homo sapiens PAC clone RP1-44L15 from Xq23, complete sequence Length = 129690 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 9 ctctttaagaaaaagaattt 28 |||||||||||||||||||| Sbjct: 82955 ctctttaagaaaaagaattt 82974
>emb|BX957287.9| Zebrafish DNA sequence from clone DKEYP-59A8 in linkage group 20, complete sequence Length = 154419 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 410 tcaatttgagtttgtcatat 429 |||||||||||||||||||| Sbjct: 58509 tcaatttgagtttgtcatat 58490
>tpe|BN000707.1| TPA: TPA_inf: Vitis vinifera mRNA for isoflavone reductase-like protein 2 (ifrl2 gene) Length = 1278 Score = 40.1 bits (20), Expect = 6.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 262 agctgctgggatttcctacacatt 285 ||||||||||||||| |||||||| Sbjct: 451 agctgctgggatttcttacacatt 474
>emb|CT573418.2| Pan troglodytes chromosome X clone PTB-046H01 map Xq28, complete sequence Length = 161084 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 9 ctctttaagaaaaagaattt 28 |||||||||||||||||||| Sbjct: 66266 ctctttaagaaaaagaattt 66285
>emb|CT574566.2| Pan troglodytes chromosome X clone CH251-413C05 map Xq28, complete sequence Length = 161928 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 9 ctctttaagaaaaagaattt 28 |||||||||||||||||||| Sbjct: 125471 ctctttaagaaaaagaattt 125490
>emb|AL163528.8|HS109K15 Homo sapiens chromosome 9 BAC RP11-109K15, complete sequence Length = 184517 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 204 aatgtatacaatttttacat 223 |||||||||||||||||||| Sbjct: 114729 aatgtatacaatttttacat 114748
>gb|AC140376.3| Mus musculus BAC clone RP24-78P21 from 12, complete sequence Length = 246636 Score = 40.1 bits (20), Expect = 6.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 5 gtaactctttaagaaaaagaattt 28 |||| ||||||||||||||||||| Sbjct: 123303 gtaaatctttaagaaaaagaattt 123326
>emb|AL442637.4|HS495L19 Homo sapiens chromosome 9 BAC RP11-495L19, complete sequence Length = 180915 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 204 aatgtatacaatttttacat 223 |||||||||||||||||||| Sbjct: 165516 aatgtatacaatttttacat 165497
>emb|AL840624.14| Mouse DNA sequence from clone RP23-183D3 on chromosome X, complete sequence Length = 124795 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 6 taactctttaagaaaaagaa 25 |||||||||||||||||||| Sbjct: 65180 taactctttaagaaaaagaa 65199
>dbj|AP001094.6| Homo sapiens genomic DNA, chromosome 18 clone:RP11-789C17, complete sequences Length = 181310 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 12 tttaagaaaaagaatttgtg 31 |||||||||||||||||||| Sbjct: 89816 tttaagaaaaagaatttgtg 89797 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 5,042,695 Number of Sequences: 3902068 Number of extensions: 5042695 Number of successful extensions: 100278 Number of sequences better than 10.0: 41 Number of HSP's better than 10.0 without gapping: 41 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 100165 Number of HSP's gapped (non-prelim): 113 length of query: 447 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 425 effective length of database: 17,147,199,772 effective search space: 7287559903100 effective search space used: 7287559903100 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)