>DYI3_CHLRE (P27766) Dynein, 70 kDa intermediate chain, flagellar outer arm|
           (IC69) (IC70)
          Length = 567

 Score = 30.0 bits (66), Expect = 2.7
 Identities = 14/38 (36%), Positives = 17/38 (44%)
 Frame = -1

Query: 197 PICSYIWSISCPNMIMYPSLSMVPVGLCCLVKLRHVSN 84
           P+ SYIW ++ PN    P   MVP    C  K     N
Sbjct: 195 PLSSYIWDVNNPNT---PEYEMVPTSQICCAKFNLKDN 229

>POLS_ONNVG (P22056) Structural polyprotein (p130) [Contains: Capsid protein|
           (EC 3.4.21.-) (Coat protein) (C); p62 (E3/E2); E3
           protein (Spike glycoprotein E3); E2 envelope
           glycoprotein (Spike glycoprotein E2); 6K protein; E1
           envelope glycoprotein (Spike g
          Length = 1247

 Score = 29.3 bits (64), Expect = 4.5
 Identities = 17/53 (32%), Positives = 24/53 (45%), Gaps = 4/53 (7%)
 Frame = -1

Query: 248 TVLYVYGWGEEIVNVLYPICSYIWSISCPNMIMYPS----LSMVPVGLCCLVK 102
           T L V  W ++IV  + P  S  WS++ P M +  +     S  P   CC  K
Sbjct: 237 TALSVVTWNKDIVTKITPEGSVEWSLALPVMCLLANTTFPCSQPPCAPCCYEK 289

>RHG12_MOUSE (Q8C0D4) Rho-GTPase-activating protein 12|
          Length = 838

 Score = 28.5 bits (62), Expect = 7.7
 Identities = 16/37 (43%), Positives = 18/37 (48%), Gaps = 4/37 (10%)
 Frame = -2

Query: 358 ALPPWPASRGFGLHNYMEL----SGYCYYYFRTYDTR 260
           ALPP P S    ++   E     SG CYYY RT   R
Sbjct: 253 ALPPLPGSPAIQVNGEWETHKDSSGRCYYYNRTTQER 289

>BRC4_DROME (Q24206) Broad-complex core-protein isoform 6|
          Length = 880

 Score = 28.5 bits (62), Expect = 7.7
 Identities = 18/62 (29%), Positives = 27/62 (43%), Gaps = 1/62 (1%)
 Frame = -3

Query: 312 TWNCRGTAITIFAPMIRV-APVYRSLCVWLGRRNRECALPYLFLHMVNFMPKHDYVSILK 136
           T  C G +I     ++   +P +R L      ++  C  P + L  VNFM  H  V  + 
Sbjct: 35  TLACEGRSIKAHRVVLSACSPYFRELL-----KSTPCKHPVILLQDVNFMDLHALVEFIY 89

Query: 135 HG 130
           HG
Sbjct: 90  HG 91

>BRC1_DROME (Q01295) Broad-complex core-protein isoforms 1/2/3/4/5|
          Length = 727

 Score = 28.5 bits (62), Expect = 7.7
 Identities = 18/62 (29%), Positives = 27/62 (43%), Gaps = 1/62 (1%)
 Frame = -3

Query: 312 TWNCRGTAITIFAPMIRV-APVYRSLCVWLGRRNRECALPYLFLHMVNFMPKHDYVSILK 136
           T  C G +I     ++   +P +R L      ++  C  P + L  VNFM  H  V  + 
Sbjct: 35  TLACEGRSIKAHRVVLSACSPYFRELL-----KSTPCKHPVILLQDVNFMDLHALVEFIY 89

Query: 135 HG 130
           HG
Sbjct: 90  HG 91


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 62,246,173
Number of Sequences: 219361
Number of extensions: 1275878
Number of successful extensions: 2595
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 2540
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2595
length of database: 80,573,946
effective HSP length: 101
effective length of database: 58,418,485
effective search space used: 2628831825
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)