ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbart23b09
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1HEXP_LEIMA (Q04832) DNA-binding protein HEXBP (Hexamer-binding p... 39 0.006
2GAG_MPMV (P07567) Gag polyprotein (Core polyprotein) [Contains: ... 36 0.037
3GLH2_CAEEL (Q966L9) ATP-dependent RNA helicase glh-2 (EC 3.6.1.-... 36 0.048
4GLH1_CAEEL (P34689) ATP-dependent RNA helicase glh-1 (EC 3.6.1.-... 36 0.048
5GRP2B_ARATH (Q38896) Glycine-rich protein 2b (AtGRP2b) 34 0.14
6ZCHC5_HUMAN (Q8N8U3) Zinc finger CCHC domain-containing protein 5 34 0.18
7CNBP_RAT (P62634) Cellular nucleic acid-binding protein (CNBP) (... 34 0.18
8CNBP_PONPY (Q5R5R5) Cellular nucleic acid-binding protein (CNBP)... 34 0.18
9CNBP_HUMAN (P62633) Cellular nucleic acid-binding protein (CNBP)... 34 0.18
10CNBP_MOUSE (P53996) Cellular nucleic acid-binding protein (CNBP)... 34 0.18
11GRP2_NICSY (P27484) Glycine-rich protein 2 34 0.18
12CNBP_CHICK (O42395) Cellular nucleic acid-binding protein (CNBP)... 33 0.41
13POLX_TOBAC (P10978) Retrovirus-related Pol polyprotein from tran... 32 0.53
14LARK_DROME (Q94901) RNA-binding protein lark 32 0.53
15GIS2_YEAST (P53849) Zinc-finger protein GIS2 32 0.53
16ZCHC9_MOUSE (Q8R1J3) Zinc finger CCHC domain-containing protein 9 32 0.53
17ZCHC9_HUMAN (Q8N567) Zinc finger CCHC domain-containing protein 9 32 0.53
18GAG_HTL1M (P14077) Gag polyprotein [Contains: Major core protein... 32 0.70
19GAG_HTL1C (P14076) Gag polyprotein [Contains: Major core protein... 32 0.70
20GAG_HTL1A (P03345) Gag polyprotein [Contains: Major core protein... 32 0.70
21GAG_GALV (P21416) Gag polyprotein [Contains: Core protein p15; C... 32 0.70
22RBM4_BRARE (Q6IQ97) RNA-binding protein 4 (RNA-binding motif pro... 32 0.91
23ZCH11_HUMAN (Q5TAX3) Zinc finger CCHC domain-containing protein 11 32 0.91
24RBM4_RABIT (Q9BDY9) RNA-binding protein 4 (RNA-binding motif pro... 31 1.2
25RBM4B_HUMAN (Q9BQ04) RNA-binding protein 4B (RNA-binding motif p... 31 1.2
26RBM4_MOUSE (Q8C7Q4) RNA-binding protein 4 (RNA-binding motif pro... 31 1.2
27RBM4_HUMAN (Q9BWF3) RNA-binding protein 4 (RNA-binding motif pro... 31 1.2
28RBM4B_RAT (Q64LC9) RNA-binding protein 4B (RNA-binding motif pro... 31 1.2
29RBM4B_MOUSE (Q8VE92) RNA-binding protein 4B (RNA-binding motif p... 31 1.2
30COAT_SOCMV (P15627) Coat protein 31 1.2
31GAG_BLVJ (P03344) Gag polyprotein [Contains: Core protein p15 (M... 31 1.2
32RBM4_BOVIN (Q3MHX3) RNA-binding protein 4 (RNA-binding motif pro... 31 1.2
33GAG_HTLV2 (P03346) Gag polyprotein [Contains: Core protein p15 (... 31 1.6
34COAT_FMVD (P09519) Probable coat protein 30 2.0
35GAG_MMTVC (P11284) Gag polyprotein [Contains: Protein p10; Phosp... 30 2.7
36GAG_SRV1 (P04022) Gag polyprotein (Core polyprotein) [Contains: ... 30 2.7
37GAK18_HUMAN (P62690) HERV-K_22q11.23 provirus ancestral Gag poly... 30 2.7
38GAG_RSVP (P03322) Gag polyprotein [Contains: Core protein p19; C... 30 2.7
39ZCHC6_MOUSE (Q5BLK4) Zinc finger CCHC domain-containing protein 6 30 3.5
40ZCHC6_HUMAN (Q5VYS8) Zinc finger CCHC domain-containing protein 6 30 3.5
41POL_COYMV (P19199) Putative polyprotein [Contains: Coat protein;... 30 3.5
42GAG_SRV2 (P51516) Gag polyprotein (Core polyprotein) [Contains: ... 30 3.5
43GAG_BLVAU (P25058) Gag polyprotein [Contains: Core protein p15 (... 30 3.5
44BYR3_SCHPO (P36627) Cellular nucleic acid-binding protein homolog 30 3.5
45GAG_SIVVT (P05892) Gag polyprotein [Contains: Core protein p17; ... 30 3.5
46GAG_SIVV1 (P27972) Gag polyprotein [Contains: Core protein p17; ... 29 4.5
47GLH4_CAEEL (O76743) ATP-dependent RNA helicase glh-4 (EC 3.6.1.-... 29 4.5
48GAG_SIVVG (P27978) Gag polyprotein [Contains: Core protein p17; ... 29 4.5
49GAG_IPMA (P11365) Retrovirus-related Gag polyprotein [Contains: ... 29 4.5
50GAG_MMTVB (P10258) Gag polyprotein [Contains: Protein p10; Phosp... 29 5.9
51ZCHC2_HUMAN (Q9C0B9) Zinc finger CCHC domain-containing protein ... 29 5.9
52GAK8_HUMAN (Q9HDB9) HERV-K_3q12.3 provirus ancestral Gag polypro... 29 5.9
53GAG_SIVG1 (Q02843) Gag polyprotein [Contains: Core protein p17; ... 29 5.9
54ZCHC2_MOUSE (Q69ZB8) Zinc finger CCHC domain-containing protein ... 29 5.9
55MSL5_YEAST (Q12186) Branchpoint-bridging protein MSL5 (MUD synth... 28 7.7
56RBBP6_MOUSE (P97868) Retinoblastoma-binding protein 6 (p53-assoc... 28 7.7
57ZCHC7_HUMAN (Q8N3Z6) Zinc finger CCHC domain-containing protein 7 28 7.7
58RBBP6_HUMAN (Q7Z6E9) Retinoblastoma-binding protein 6 (p53-assoc... 28 7.7 
>HEXP_LEIMA (Q04832) DNA-binding protein HEXBP (Hexamer-binding protein)|
          Length = 271

 Score = 38.9 bits (89), Expect = 0.006
 Identities = 14/18 (77%), Positives = 15/18 (83%)
 Frame = -2

Query: 340 CFSCGESGHFSRECPNKA 287
           CF CGE GH SRECPN+A
Sbjct: 45  CFRCGEEGHMSRECPNEA 62



 Score = 37.7 bits (86), Expect = 0.013
 Identities = 13/18 (72%), Positives = 15/18 (83%)
 Frame = -2

Query: 340 CFSCGESGHFSRECPNKA 287
           CF CGE+GH SR+CPN A
Sbjct: 72  CFRCGEAGHMSRDCPNSA 89



 Score = 35.8 bits (81), Expect = 0.048
 Identities = 12/16 (75%), Positives = 14/16 (87%)
 Frame = -2

Query: 340 CFSCGESGHFSRECPN 293
           C+ CGESGH SRECP+
Sbjct: 198 CYKCGESGHMSRECPS 213



 Score = 34.3 bits (77), Expect = 0.14
 Identities = 10/16 (62%), Positives = 14/16 (87%)
 Frame = -2

Query: 340 CFSCGESGHFSRECPN 293
           C+ CG++GH SR+CPN
Sbjct: 170 CYKCGDAGHISRDCPN 185



 Score = 34.3 bits (77), Expect = 0.14
 Identities = 10/16 (62%), Positives = 14/16 (87%)
 Frame = -2

Query: 340 CFSCGESGHFSRECPN 293
           C+ CG++GH SR+CPN
Sbjct: 142 CYKCGDAGHISRDCPN 157



 Score = 33.5 bits (75), Expect = 0.24
 Identities = 10/16 (62%), Positives = 14/16 (87%)
 Frame = -2

Query: 340 CFSCGESGHFSRECPN 293
           C+ CGE+GH SR+CP+
Sbjct: 255 CYKCGEAGHISRDCPS 270



 Score = 32.0 bits (71), Expect = 0.70
 Identities = 10/15 (66%), Positives = 12/15 (80%)
 Frame = -2

Query: 340 CFSCGESGHFSRECP 296
           C+ CG+ GH SRECP
Sbjct: 224 CYKCGKPGHISRECP 238



 Score = 32.0 bits (71), Expect = 0.70
 Identities = 9/16 (56%), Positives = 13/16 (81%)
 Frame = -2

Query: 340 CFSCGESGHFSRECPN 293
           C+ CG+ GH SR+CP+
Sbjct: 99  CYKCGQEGHLSRDCPS 114



 Score = 30.4 bits (67), Expect = 2.0
 Identities = 9/15 (60%), Positives = 13/15 (86%)
 Frame = -2

Query: 340 CFSCGESGHFSRECP 296
           C +CG+ GH++RECP
Sbjct: 18  CRNCGKEGHYARECP 32
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>GAG_MPMV (P07567) Gag polyprotein (Core polyprotein) [Contains: Core protein|
           p10; Core phosphoprotein pp24; Core protein p12; Core
           protein p27; Core protein p14; Core protein p4]
          Length = 656

 Score = 36.2 bits (82), Expect = 0.037
 Identities = 15/31 (48%), Positives = 19/31 (61%), Gaps = 1/31 (3%)
 Frame = -2

Query: 340 CFSCGESGHFSRECPNKAH*AAQP-VRSECP 251
           CF CG+ GHF++ C   AH  A+P V   CP
Sbjct: 548 CFKCGKKGHFAKNCHEHAHNNAEPKVPGLCP 578
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>GLH2_CAEEL (Q966L9) ATP-dependent RNA helicase glh-2 (EC 3.6.1.-) (Germline|
           helicase 2)
          Length = 974

 Score = 35.8 bits (81), Expect = 0.048
 Identities = 13/18 (72%), Positives = 14/18 (77%)
 Frame = -2

Query: 340 CFSCGESGHFSRECPNKA 287
           CF+CGE GH S ECPN A
Sbjct: 475 CFNCGEQGHRSNECPNPA 492
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>GLH1_CAEEL (P34689) ATP-dependent RNA helicase glh-1 (EC 3.6.1.-) (Germline|
           helicase 1)
          Length = 763

 Score = 35.8 bits (81), Expect = 0.048
 Identities = 13/18 (72%), Positives = 14/18 (77%)
 Frame = -2

Query: 340 CFSCGESGHFSRECPNKA 287
           CF+CGE GH S ECPN A
Sbjct: 264 CFNCGEQGHRSNECPNPA 281
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>GRP2B_ARATH (Q38896) Glycine-rich protein 2b (AtGRP2b)|
          Length = 201

 Score = 34.3 bits (77), Expect = 0.14
 Identities = 11/14 (78%), Positives = 14/14 (100%)
 Frame = -2

Query: 340 CFSCGESGHFSREC 299
           C+SCGESGHF+R+C
Sbjct: 182 CYSCGESGHFARDC 195



 Score = 30.8 bits (68), Expect = 1.6
 Identities = 10/14 (71%), Positives = 11/14 (78%)
 Frame = -2

Query: 340 CFSCGESGHFSREC 299
           CF CGE GH +REC
Sbjct: 138 CFKCGEPGHMAREC 151
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>ZCHC5_HUMAN (Q8N8U3) Zinc finger CCHC domain-containing protein 5|
          Length = 475

 Score = 33.9 bits (76), Expect = 0.18
 Identities = 13/23 (56%), Positives = 15/23 (65%)
 Frame = -2

Query: 340 CFSCGESGHFSRECPNKAH*AAQ 272
           C  CG  GHF+R+CP K H A Q
Sbjct: 445 CLYCGYPGHFARDCPVKPHQALQ 467
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>CNBP_RAT (P62634) Cellular nucleic acid-binding protein (CNBP) (Zinc finger|
           protein 9)
          Length = 177

 Score = 33.9 bits (76), Expect = 0.18
 Identities = 11/15 (73%), Positives = 13/15 (86%)
 Frame = -2

Query: 340 CFSCGESGHFSRECP 296
           CF CG SGH++RECP
Sbjct: 6   CFKCGRSGHWARECP 20



 Score = 31.6 bits (70), Expect = 0.91
 Identities = 11/18 (61%), Positives = 14/18 (77%)
 Frame = -2

Query: 340 CFSCGESGHFSRECPNKA 287
           C+ CGESGH +REC  +A
Sbjct: 158 CYRCGESGHLARECTIEA 175



 Score = 28.9 bits (63), Expect = 5.9
 Identities = 8/14 (57%), Positives = 12/14 (85%)
 Frame = -2

Query: 340 CFSCGESGHFSREC 299
           C+ CGESGH +++C
Sbjct: 54  CYRCGESGHLAKDC 67
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>CNBP_PONPY (Q5R5R5) Cellular nucleic acid-binding protein (CNBP) (Zinc finger|
           protein 9)
          Length = 177

 Score = 33.9 bits (76), Expect = 0.18
 Identities = 11/15 (73%), Positives = 13/15 (86%)
 Frame = -2

Query: 340 CFSCGESGHFSRECP 296
           CF CG SGH++RECP
Sbjct: 6   CFKCGRSGHWARECP 20



 Score = 31.6 bits (70), Expect = 0.91
 Identities = 11/18 (61%), Positives = 14/18 (77%)
 Frame = -2

Query: 340 CFSCGESGHFSRECPNKA 287
           C+ CGESGH +REC  +A
Sbjct: 158 CYRCGESGHLARECTIEA 175



 Score = 28.9 bits (63), Expect = 5.9
 Identities = 8/14 (57%), Positives = 12/14 (85%)
 Frame = -2

Query: 340 CFSCGESGHFSREC 299
           C+ CGESGH +++C
Sbjct: 54  CYRCGESGHLAKDC 67
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>CNBP_HUMAN (P62633) Cellular nucleic acid-binding protein (CNBP) (Zinc finger|
           protein 9)
          Length = 177

 Score = 33.9 bits (76), Expect = 0.18
 Identities = 11/15 (73%), Positives = 13/15 (86%)
 Frame = -2

Query: 340 CFSCGESGHFSRECP 296
           CF CG SGH++RECP
Sbjct: 6   CFKCGRSGHWARECP 20



 Score = 31.6 bits (70), Expect = 0.91
 Identities = 11/18 (61%), Positives = 14/18 (77%)
 Frame = -2

Query: 340 CFSCGESGHFSRECPNKA 287
           C+ CGESGH +REC  +A
Sbjct: 158 CYRCGESGHLARECTIEA 175



 Score = 28.9 bits (63), Expect = 5.9
 Identities = 8/14 (57%), Positives = 12/14 (85%)
 Frame = -2

Query: 340 CFSCGESGHFSREC 299
           C+ CGESGH +++C
Sbjct: 54  CYRCGESGHLAKDC 67
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>CNBP_MOUSE (P53996) Cellular nucleic acid-binding protein (CNBP) (Zinc finger|
           protein 9)
          Length = 178

 Score = 33.9 bits (76), Expect = 0.18
 Identities = 11/15 (73%), Positives = 13/15 (86%)
 Frame = -2

Query: 340 CFSCGESGHFSRECP 296
           CF CG SGH++RECP
Sbjct: 6   CFKCGRSGHWARECP 20



 Score = 31.6 bits (70), Expect = 0.91
 Identities = 11/18 (61%), Positives = 14/18 (77%)
 Frame = -2

Query: 340 CFSCGESGHFSRECPNKA 287
           C+ CGESGH +REC  +A
Sbjct: 159 CYRCGESGHLARECTIEA 176



 Score = 28.9 bits (63), Expect = 5.9
 Identities = 8/14 (57%), Positives = 12/14 (85%)
 Frame = -2

Query: 340 CFSCGESGHFSREC 299
           C+ CGESGH +++C
Sbjct: 54  CYRCGESGHLAKDC 67
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>GRP2_NICSY (P27484) Glycine-rich protein 2|
          Length = 214

 Score = 33.9 bits (76), Expect = 0.18
 Identities = 11/14 (78%), Positives = 13/14 (92%)
 Frame = -2

Query: 340 CFSCGESGHFSREC 299
           CF CGESGHF+R+C
Sbjct: 159 CFKCGESGHFARDC 172



 Score = 32.3 bits (72), Expect = 0.53
 Identities = 10/14 (71%), Positives = 12/14 (85%)
 Frame = -2

Query: 340 CFSCGESGHFSREC 299
           C+ CGE GHF+REC
Sbjct: 196 CYKCGEDGHFAREC 209
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>CNBP_CHICK (O42395) Cellular nucleic acid-binding protein (CNBP) (Zinc finger|
           protein 9)
          Length = 172

 Score = 32.7 bits (73), Expect = 0.41
 Identities = 10/15 (66%), Positives = 13/15 (86%)
 Frame = -2

Query: 340 CFSCGESGHFSRECP 296
           CF CG +GH++RECP
Sbjct: 6   CFKCGRTGHWARECP 20



 Score = 31.6 bits (70), Expect = 0.91
 Identities = 11/18 (61%), Positives = 14/18 (77%)
 Frame = -2

Query: 340 CFSCGESGHFSRECPNKA 287
           C+ CGESGH +REC  +A
Sbjct: 153 CYRCGESGHLARECTIEA 170



 Score = 28.9 bits (63), Expect = 5.9
 Identities = 8/14 (57%), Positives = 12/14 (85%)
 Frame = -2

Query: 340 CFSCGESGHFSREC 299
           C+ CGESGH +++C
Sbjct: 48  CYRCGESGHLAKDC 61
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>POLX_TOBAC (P10978) Retrovirus-related Pol polyprotein from transposon TNT|
           1-94 [Includes: Protease (EC 3.4.23.-); Reverse
           transcriptase (EC 2.7.7.49); Endonuclease]
          Length = 1328

 Score = 32.3 bits (72), Expect = 0.53
 Identities = 9/16 (56%), Positives = 13/16 (81%)
 Frame = -2

Query: 340 CFSCGESGHFSRECPN 293
           C++C + GHF R+CPN
Sbjct: 232 CYNCNQPGHFKRDCPN 247
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>LARK_DROME (Q94901) RNA-binding protein lark|
          Length = 352

 Score = 32.3 bits (72), Expect = 0.53
 Identities = 10/15 (66%), Positives = 13/15 (86%)
 Frame = -2

Query: 340 CFSCGESGHFSRECP 296
           C+ CG SGH+S+ECP
Sbjct: 170 CYRCGRSGHWSKECP 184
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>GIS2_YEAST (P53849) Zinc-finger protein GIS2|
          Length = 153

 Score = 32.3 bits (72), Expect = 0.53
 Identities = 10/15 (66%), Positives = 13/15 (86%)
 Frame = -2

Query: 340 CFSCGESGHFSRECP 296
           CF+C ++GH SRECP
Sbjct: 67  CFNCNQTGHISRECP 81



 Score = 31.6 bits (70), Expect = 0.91
 Identities = 9/16 (56%), Positives = 14/16 (87%)
 Frame = -2

Query: 340 CFSCGESGHFSRECPN 293
           C++CG++GH SR+C N
Sbjct: 118 CYTCGQAGHMSRDCQN 133



 Score = 30.0 bits (66), Expect = 2.7
 Identities = 8/15 (53%), Positives = 13/15 (86%)
 Frame = -2

Query: 340 CFSCGESGHFSRECP 296
           C++C E+GH S++CP
Sbjct: 137 CYNCNETGHISKDCP 151
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>ZCHC9_MOUSE (Q8R1J3) Zinc finger CCHC domain-containing protein 9|
          Length = 273

 Score = 32.3 bits (72), Expect = 0.53
 Identities = 11/16 (68%), Positives = 12/16 (75%)
 Frame = -2

Query: 340 CFSCGESGHFSRECPN 293
           CF CGE GH SR CP+
Sbjct: 186 CFVCGEMGHLSRSCPD 201
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>ZCHC9_HUMAN (Q8N567) Zinc finger CCHC domain-containing protein 9|
          Length = 271

 Score = 32.3 bits (72), Expect = 0.53
 Identities = 11/16 (68%), Positives = 12/16 (75%)
 Frame = -2

Query: 340 CFSCGESGHFSRECPN 293
           CF CGE GH SR CP+
Sbjct: 186 CFVCGEMGHLSRSCPD 201
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>GAG_HTL1M (P14077) Gag polyprotein [Contains: Major core protein p19; Major|
           core protein p24; Nucleic acid-binding protein p15]
          Length = 428

 Score = 32.0 bits (71), Expect = 0.70
 Identities = 13/31 (41%), Positives = 18/31 (58%)
 Frame = -2

Query: 340 CFSCGESGHFSRECPNKAH*AAQPVRSECPL 248
           CF CG++GH+SR+C        +P    CPL
Sbjct: 356 CFRCGKAGHWSRDCTQ-----PRPPPGPCPL 381
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>GAG_HTL1C (P14076) Gag polyprotein [Contains: Major core protein p19; Major|
           core protein p24; Nucleic acid-binding protein p15]
          Length = 429

 Score = 32.0 bits (71), Expect = 0.70
 Identities = 13/31 (41%), Positives = 18/31 (58%)
 Frame = -2

Query: 340 CFSCGESGHFSRECPNKAH*AAQPVRSECPL 248
           CF CG++GH+SR+C        +P    CPL
Sbjct: 357 CFRCGKAGHWSRDCTQ-----PRPPPGPCPL 382
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>GAG_HTL1A (P03345) Gag polyprotein [Contains: Major core protein p19; Major|
           core protein p24; Nucleic acid-binding protein p15]
          Length = 429

 Score = 32.0 bits (71), Expect = 0.70
 Identities = 13/31 (41%), Positives = 18/31 (58%)
 Frame = -2

Query: 340 CFSCGESGHFSRECPNKAH*AAQPVRSECPL 248
           CF CG++GH+SR+C        +P    CPL
Sbjct: 357 CFRCGKAGHWSRDCTQ-----PRPPPGPCPL 382
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>GAG_GALV (P21416) Gag polyprotein [Contains: Core protein p15; Core protein|
           p12; Core protein p30; Core protein p10]
          Length = 519

 Score = 32.0 bits (71), Expect = 0.70
 Identities = 11/19 (57%), Positives = 13/19 (68%)
 Frame = -2

Query: 340 CFSCGESGHFSRECPNKAH 284
           C  C E GH++RECP K H
Sbjct: 490 CAYCKEKGHWARECPRKKH 508
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>RBM4_BRARE (Q6IQ97) RNA-binding protein 4 (RNA-binding motif protein 4)|
          Length = 419

 Score = 31.6 bits (70), Expect = 0.91
 Identities = 9/15 (60%), Positives = 13/15 (86%)
 Frame = -2

Query: 340 CFSCGESGHFSRECP 296
           C+ CG+ GH+S+ECP
Sbjct: 162 CYRCGQEGHWSKECP 176
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>ZCH11_HUMAN (Q5TAX3) Zinc finger CCHC domain-containing protein 11|
          Length = 1644

 Score = 31.6 bits (70), Expect = 0.91
 Identities = 16/35 (45%), Positives = 20/35 (57%), Gaps = 8/35 (22%)
 Frame = -2

Query: 340  CFSCGESGHFSRECP--------NKAH*AAQPVRS 260
            CF CG++GH  RECP        N +  AAQ VR+
Sbjct: 1359 CFICGDAGHVRRECPEVKLARQRNSSVAAAQLVRN 1393
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>RBM4_RABIT (Q9BDY9) RNA-binding protein 4 (RNA-binding motif protein 4) (Lark|
           homolog)
          Length = 359

 Score = 31.2 bits (69), Expect = 1.2
 Identities = 9/15 (60%), Positives = 13/15 (86%)
 Frame = -2

Query: 340 CFSCGESGHFSRECP 296
           C+ CG+ GH+S+ECP
Sbjct: 162 CYRCGKEGHWSKECP 176
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>RBM4B_HUMAN (Q9BQ04) RNA-binding protein 4B (RNA-binding motif protein 4B)|
           (RNA-binding protein 30) (RNA-binding motif protein 30)
          Length = 359

 Score = 31.2 bits (69), Expect = 1.2
 Identities = 9/15 (60%), Positives = 13/15 (86%)
 Frame = -2

Query: 340 CFSCGESGHFSRECP 296
           C+ CG+ GH+S+ECP
Sbjct: 162 CYRCGKEGHWSKECP 176
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>RBM4_MOUSE (Q8C7Q4) RNA-binding protein 4 (RNA-binding motif protein 4)|
           (RNA-binding motif protein 4a) (Lark homolog) (mLark)
          Length = 361

 Score = 31.2 bits (69), Expect = 1.2
 Identities = 9/15 (60%), Positives = 13/15 (86%)
 Frame = -2

Query: 340 CFSCGESGHFSRECP 296
           C+ CG+ GH+S+ECP
Sbjct: 162 CYRCGKEGHWSKECP 176
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>RBM4_HUMAN (Q9BWF3) RNA-binding protein 4 (RNA-binding motif protein 4)|
           (RNA-binding motif protein 4a) (Lark homolog) (hLark)
          Length = 364

 Score = 31.2 bits (69), Expect = 1.2
 Identities = 9/15 (60%), Positives = 13/15 (86%)
 Frame = -2

Query: 340 CFSCGESGHFSRECP 296
           C+ CG+ GH+S+ECP
Sbjct: 162 CYRCGKEGHWSKECP 176
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>RBM4B_RAT (Q64LC9) RNA-binding protein 4B (RNA-binding motif protein 4B)|
           (RNA-binding protein 30) (RNA-binding motif protein 30)
           (Zinc-responsive protein ZD7)
          Length = 357

 Score = 31.2 bits (69), Expect = 1.2
 Identities = 9/15 (60%), Positives = 13/15 (86%)
 Frame = -2

Query: 340 CFSCGESGHFSRECP 296
           C+ CG+ GH+S+ECP
Sbjct: 162 CYRCGKEGHWSKECP 176
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>RBM4B_MOUSE (Q8VE92) RNA-binding protein 4B (RNA-binding motif protein 4B)|
           (RNA-binding protein 30) (RNA-binding motif protein 30)
          Length = 357

 Score = 31.2 bits (69), Expect = 1.2
 Identities = 9/15 (60%), Positives = 13/15 (86%)
 Frame = -2

Query: 340 CFSCGESGHFSRECP 296
           C+ CG+ GH+S+ECP
Sbjct: 162 CYRCGKEGHWSKECP 176
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>COAT_SOCMV (P15627) Coat protein|
          Length = 441

 Score = 31.2 bits (69), Expect = 1.2
 Identities = 11/26 (42%), Positives = 17/26 (65%)
 Frame = -2

Query: 340 CFSCGESGHFSRECPNKAH*AAQPVR 263
           C+ C E GH++ ECP K +  AQ ++
Sbjct: 383 CWLCHEEGHYANECPKKDNKKAQTLK 408
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>GAG_BLVJ (P03344) Gag polyprotein [Contains: Core protein p15 (Matrix|
           protein); Core protein p24; Core protein p12]
          Length = 391

 Score = 31.2 bits (69), Expect = 1.2
 Identities = 12/31 (38%), Positives = 18/31 (58%)
 Frame = -2

Query: 340 CFSCGESGHFSRECPNKAH*AAQPVRSECPL 248
           C+ C + GH++R+CP K   A  P    CP+
Sbjct: 346 CYRCLKEGHWARDCPTK---ATGPPPGPCPI 373
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>RBM4_BOVIN (Q3MHX3) RNA-binding protein 4 (RNA-binding motif protein 4)|
           (RNA-binding motif protein 4a)
          Length = 362

 Score = 31.2 bits (69), Expect = 1.2
 Identities = 9/15 (60%), Positives = 13/15 (86%)
 Frame = -2

Query: 340 CFSCGESGHFSRECP 296
           C+ CG+ GH+S+ECP
Sbjct: 162 CYRCGKEGHWSKECP 176
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>GAG_HTLV2 (P03346) Gag polyprotein [Contains: Core protein p15 (p19); Core|
           protein p24; Core protein p12 (p15)]
          Length = 432

 Score = 30.8 bits (68), Expect = 1.6
 Identities = 13/31 (41%), Positives = 17/31 (54%)
 Frame = -2

Query: 340 CFSCGESGHFSRECPNKAH*AAQPVRSECPL 248
           CF CG+ GH+SR+C        +P    CPL
Sbjct: 362 CFRCGKVGHWSRDCTQ-----PRPPPGPCPL 387
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>COAT_FMVD (P09519) Probable coat protein|
          Length = 489

 Score = 30.4 bits (67), Expect = 2.0
 Identities = 9/17 (52%), Positives = 13/17 (76%)
 Frame = -2

Query: 340 CFSCGESGHFSRECPNK 290
           C+ C E GH++ ECPN+
Sbjct: 411 CWICTEEGHYANECPNR 427
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>GAG_MMTVC (P11284) Gag polyprotein [Contains: Protein p10; Phosphorylated|
           protein pp21; Protein p3; Protein p8; Protein n; Major
           core protein p27; Nucleic acid-binding protein p14]
          Length = 590

 Score = 30.0 bits (66), Expect = 2.7
 Identities = 9/14 (64%), Positives = 12/14 (85%)
 Frame = -2

Query: 340 CFSCGESGHFSREC 299
           CFSCG++GH  R+C
Sbjct: 526 CFSCGKTGHIKRDC 539
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>GAG_SRV1 (P04022) Gag polyprotein (Core polyprotein) [Contains: Core protein|
           p10; Core phosphoprotein pp18; Core protein p12; Core
           protein p27; Core protein p14; Core protein p4]
          Length = 657

 Score = 30.0 bits (66), Expect = 2.7
 Identities = 9/19 (47%), Positives = 11/19 (57%)
 Frame = -2

Query: 340 CFSCGESGHFSRECPNKAH 284
           CF CG  GHF++ C    H
Sbjct: 549 CFKCGRKGHFAKNCHEHIH 567
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>GAK18_HUMAN (P62690) HERV-K_22q11.23 provirus ancestral Gag polyprotein (Gag|
           polyprotein) [Contains: Matrix protein; Capsid protein;
           Nucleocapsid protein]
          Length = 622

 Score = 30.0 bits (66), Expect = 2.7
 Identities = 12/30 (40%), Positives = 18/30 (60%), Gaps = 2/30 (6%)
 Frame = -2

Query: 340 CFSCGESGHFSRECP--NKAH*AAQPVRSE 257
           C++CG+ GH  R CP  NK +   Q + S+
Sbjct: 592 CYNCGQIGHLKRSCPGLNKQNIINQAINSK 621
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>GAG_RSVP (P03322) Gag polyprotein [Contains: Core protein p19; Core protein|
           p2A; Core protein p2B; Core protein p10; Capsid protein
           p27; Inner coat protein p12; Protease p15 (EC 3.4.23.-)]
          Length = 701

 Score = 30.0 bits (66), Expect = 2.7
 Identities = 8/17 (47%), Positives = 12/17 (70%)
 Frame = -2

Query: 340 CFSCGESGHFSRECPNK 290
           C++CG  GH+  +CP K
Sbjct: 509 CYTCGSPGHYQAQCPKK 525
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>ZCHC6_MOUSE (Q5BLK4) Zinc finger CCHC domain-containing protein 6|
          Length = 1491

 Score = 29.6 bits (65), Expect = 3.5
 Identities = 9/15 (60%), Positives = 10/15 (66%)
 Frame = -2

Query: 340  CFSCGESGHFSRECP 296
            CF CG  GH  +ECP
Sbjct: 1449 CFICGREGHIKKECP 1463
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>ZCHC6_HUMAN (Q5VYS8) Zinc finger CCHC domain-containing protein 6|
          Length = 1495

 Score = 29.6 bits (65), Expect = 3.5
 Identities = 9/15 (60%), Positives = 10/15 (66%)
 Frame = -2

Query: 340  CFSCGESGHFSRECP 296
            CF CG  GH  +ECP
Sbjct: 1453 CFICGREGHIKKECP 1467
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>POL_COYMV (P19199) Putative polyprotein [Contains: Coat protein; Protease (EC|
           3.4.23.-); Reverse transcriptase (EC 2.7.7.49);
           Ribonuclease H (EC 3.1.26.4)]
          Length = 1886

 Score = 29.6 bits (65), Expect = 3.5
 Identities = 8/17 (47%), Positives = 13/17 (76%)
 Frame = -2

Query: 340 CFSCGESGHFSRECPNK 290
           C+ CG+ GH++ +C NK
Sbjct: 881 CYICGQEGHYANQCRNK 897
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>GAG_SRV2 (P51516) Gag polyprotein (Core polyprotein) [Contains: Core protein|
           p10; Core phosphoprotein pp18; Core protein p12; Core
           protein p27; Core protein p14; Core protein p4]
          Length = 653

 Score = 29.6 bits (65), Expect = 3.5
 Identities = 8/14 (57%), Positives = 12/14 (85%)
 Frame = -2

Query: 340 CFSCGESGHFSREC 299
           CF CG+ GHF+++C
Sbjct: 545 CFKCGKKGHFAKDC 558
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>GAG_BLVAU (P25058) Gag polyprotein [Contains: Core protein p15 (Matrix|
           protein); Core protein p24; Core protein p12]
          Length = 391

 Score = 29.6 bits (65), Expect = 3.5
 Identities = 11/31 (35%), Positives = 17/31 (54%)
 Frame = -2

Query: 340 CFSCGESGHFSRECPNKAH*AAQPVRSECPL 248
           C+ C + GH++R+CP K      P    CP+
Sbjct: 346 CYRCLKEGHWARDCPTK---TTGPPPGPCPI 373
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>BYR3_SCHPO (P36627) Cellular nucleic acid-binding protein homolog|
          Length = 179

 Score = 29.6 bits (65), Expect = 3.5
 Identities = 9/14 (64%), Positives = 13/14 (92%)
 Frame = -2

Query: 340 CFSCGESGHFSREC 299
           C++CGE+GH +REC
Sbjct: 19  CYNCGENGHQAREC 32



 Score = 29.3 bits (64), Expect = 4.5
 Identities = 8/16 (50%), Positives = 13/16 (81%)
 Frame = -2

Query: 340 CFSCGESGHFSRECPN 293
           C++CG +GH  R+CP+
Sbjct: 60  CYACGTAGHLVRDCPS 75
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>GAG_SIVVT (P05892) Gag polyprotein [Contains: Core protein p17; Core protein|
           p24; Core protein p15]
          Length = 519

 Score = 29.6 bits (65), Expect = 3.5
 Identities = 10/29 (34%), Positives = 18/29 (62%)
 Frame = -2

Query: 340 CFSCGESGHFSRECPNKAH*AAQPVRSEC 254
           C++CG+ GH  R+CP       +P +++C
Sbjct: 399 CYNCGKFGHMQRQCP-------EPRKTKC 420
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>GAG_SIVV1 (P27972) Gag polyprotein [Contains: Core protein p17; Core protein|
           p24; Core protein p15]
          Length = 520

 Score = 29.3 bits (64), Expect = 4.5
 Identities = 8/15 (53%), Positives = 12/15 (80%)
 Frame = -2

Query: 340 CFSCGESGHFSRECP 296
           C++CG+ GH  R+CP
Sbjct: 400 CYNCGKFGHMQRQCP 414
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>GLH4_CAEEL (O76743) ATP-dependent RNA helicase glh-4 (EC 3.6.1.-) (Germline|
           helicase 4)
          Length = 1156

 Score = 29.3 bits (64), Expect = 4.5
 Identities = 8/17 (47%), Positives = 14/17 (82%)
 Frame = -2

Query: 340 CFSCGESGHFSRECPNK 290
           C +CG+ GHF+++C N+
Sbjct: 641 CRNCGQEGHFAKDCQNE 657



 Score = 28.9 bits (63), Expect = 5.9
 Identities = 9/14 (64%), Positives = 11/14 (78%)
 Frame = -2

Query: 340 CFSCGESGHFSREC 299
           C +CGE GH S+EC
Sbjct: 572 CHNCGEEGHISKEC 585
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>GAG_SIVVG (P27978) Gag polyprotein [Contains: Core protein p17; Core protein|
           p24; Core protein p15]
          Length = 521

 Score = 29.3 bits (64), Expect = 4.5
 Identities = 8/15 (53%), Positives = 12/15 (80%)
 Frame = -2

Query: 340 CFSCGESGHFSRECP 296
           C++CG+ GH  R+CP
Sbjct: 404 CYNCGKFGHMQRQCP 418
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>GAG_IPMA (P11365) Retrovirus-related Gag polyprotein [Contains: Protease (EC|
           3.4.23.-)]
          Length = 827

 Score = 29.3 bits (64), Expect = 4.5
 Identities = 8/14 (57%), Positives = 12/14 (85%)
 Frame = -2

Query: 340 CFSCGESGHFSREC 299
           CF+CG+ GHF ++C
Sbjct: 460 CFNCGKPGHFKKDC 473
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>GAG_MMTVB (P10258) Gag polyprotein [Contains: Protein p10; Phosphorylated|
           protein pp21; Protein p3; Protein p8; Protein n; Major
           core protein p27; Nucleic acid-binding protein p14]
          Length = 590

 Score = 28.9 bits (63), Expect = 5.9
 Identities = 8/17 (47%), Positives = 14/17 (82%)
 Frame = -2

Query: 340 CFSCGESGHFSRECPNK 290
           CFSCG++GH  ++C ++
Sbjct: 526 CFSCGKTGHIRKDCKDE 542
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>ZCHC2_HUMAN (Q9C0B9) Zinc finger CCHC domain-containing protein 2 (Fragment)|
          Length = 899

 Score = 28.9 bits (63), Expect = 5.9
 Identities = 13/36 (36%), Positives = 21/36 (58%), Gaps = 4/36 (11%)
 Frame = -2

Query: 340 CFSCGESGHFSRECPNKAH*AAQP----VRSECPLP 245
           C++CG SGH++++C   +  A Q     +R   PLP
Sbjct: 854 CYNCGVSGHYAQDCKQSSMEANQQGTYRLRYAPPLP 889
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>GAK8_HUMAN (Q9HDB9) HERV-K_3q12.3 provirus ancestral Gag polyprotein (Gag|
           polyprotein) (HERV-K(II) Gag protein) [Contains: Matrix
           protein; Capsid protein; Nucleocapsid protein]
          Length = 666

 Score = 28.9 bits (63), Expect = 5.9
 Identities = 8/15 (53%), Positives = 11/15 (73%)
 Frame = -2

Query: 340 CFSCGESGHFSRECP 296
           C++CG+ GH  R CP
Sbjct: 544 CYNCGQIGHLKRSCP 558
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>GAG_SIVG1 (Q02843) Gag polyprotein [Contains: Core protein p17; Core protein|
           p24; Core protein p15]
          Length = 513

 Score = 28.9 bits (63), Expect = 5.9
 Identities = 9/14 (64%), Positives = 11/14 (78%)
 Frame = -2

Query: 340 CFSCGESGHFSREC 299
           CF+CG+ GH  REC
Sbjct: 392 CFNCGKFGHMQREC 405



 Score = 28.5 bits (62), Expect = 7.7
 Identities = 8/16 (50%), Positives = 12/16 (75%)
 Frame = -2

Query: 340 CFSCGESGHFSRECPN 293
           CF CG+ GH +++C N
Sbjct: 413 CFKCGKIGHMAKDCKN 428
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>ZCHC2_MOUSE (Q69ZB8) Zinc finger CCHC domain-containing protein 2 (Fragment)|
          Length = 1168

 Score = 28.9 bits (63), Expect = 5.9
 Identities = 13/36 (36%), Positives = 21/36 (58%), Gaps = 4/36 (11%)
 Frame = -2

Query: 340  CFSCGESGHFSRECPNKAH*AAQP----VRSECPLP 245
            C++CG SGH++++C   +  A Q     +R   PLP
Sbjct: 1123 CYNCGVSGHYAQDCKQSSMEANQQGTYRLRYAPPLP 1158
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>MSL5_YEAST (Q12186) Branchpoint-bridging protein MSL5 (MUD synthesis lethal 5|
           protein)
          Length = 476

 Score = 28.5 bits (62), Expect = 7.7
 Identities = 9/14 (64%), Positives = 12/14 (85%)
 Frame = -2

Query: 340 CFSCGESGHFSREC 299
           C  CG++GHFSR+C
Sbjct: 299 CKICGQTGHFSRDC 312
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>RBBP6_MOUSE (P97868) Retinoblastoma-binding protein 6 (p53-associated cellular|
           protein of testis) (Proliferation potential-related
           protein) (Protein P2P-R)
          Length = 1790

 Score = 28.5 bits (62), Expect = 7.7
 Identities = 8/15 (53%), Positives = 11/15 (73%)
 Frame = -2

Query: 340 CFSCGESGHFSRECP 296
           CF CG+ GH+ + CP
Sbjct: 162 CFRCGKPGHYIKNCP 176
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>ZCHC7_HUMAN (Q8N3Z6) Zinc finger CCHC domain-containing protein 7|
          Length = 542

 Score = 28.5 bits (62), Expect = 7.7
 Identities = 7/17 (41%), Positives = 11/17 (64%)
 Frame = -2

Query: 340 CFSCGESGHFSRECPNK 290
           C+ C + GH+  ECP +
Sbjct: 349 CYHCAQKGHYGHECPER 365
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>RBBP6_HUMAN (Q7Z6E9) Retinoblastoma-binding protein 6 (p53-associated cellular|
           protein of testis) (Proliferation potential-related
           protein) (Protein P2P-R) (Retinoblastoma-binding Q
           protein 1) (Protein RBQ-1)
          Length = 1792

 Score = 28.5 bits (62), Expect = 7.7
 Identities = 8/15 (53%), Positives = 11/15 (73%)
 Frame = -2

Query: 340 CFSCGESGHFSRECP 296
           CF CG+ GH+ + CP
Sbjct: 161 CFRCGKPGHYIKNCP 175


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 37,397,425
Number of Sequences: 219361
Number of extensions: 531497
Number of successful extensions: 1445
Number of sequences better than 10.0: 58
Number of HSP's better than 10.0 without gapping: 1252
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1444
length of database: 80,573,946
effective HSP length: 102
effective length of database: 58,199,124
effective search space used: 2618960580
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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