>dbj|AB161683.1| Triticum aestivum WCSP3 mRNA for cold shock domain protein 3,
            complete cds
          Length = 1025

 Score =  416 bits (210), Expect = e-113
 Identities = 304/332 (91%), Gaps = 5/332 (1%)
 Strand = Plus / Minus

                                                                        
Query: 9    gacaccaaacttgacttcgataacttagttcatccaatacataagagatagatctgtgtc 68
            ||||||||||||||||||||||||||||| ||||||| |||||   ||||||||||||||
Sbjct: 1008 gacaccaaacttgacttcgataacttagtccatccaacacata---gatagatctgtgtc 952

                                                                        
Query: 69   ctcatcacagagacacaacaaaataacttggatctttaacggacaaaccaccagcaattc 128
            ||||||||||||| ||| |||||||||||||||||| |||| ||| ||||||||||||||
Sbjct: 951  ctcatcacagagagacagcaaaataacttggatctt-aacgaacacaccaccagcaattc 893

                                                                        
Query: 129  ttctggatccaagctcgcatggagcagcacggggaaacgctacggcgactaatactagta 188
            ||||||| |||||||||||| |||||||| ||||||||||||||||||||||||||||||
Sbjct: 892  ttctggaaccaagctcgcatcgagcagcagggggaaacgctacggcgactaatactagta 833

                                                                        
Query: 189  ctgataggtatagg-tatgacttgatgcaggatcaggagataggaaaaggagcgaagggg 247
            |||||||||||||| ||||||||| ||||| |||||||| |||| |||||||| | ||  
Sbjct: 832  ctgataggtatagggtatgacttgctgcagaatcaggaggtaggtaaaggagcaagggta 773

                                                                        
Query: 248  aagggggcactcagatctgacgggctgcgccgcttagtgggccttgttggggcactcgcg 307
            || ||||||||||||||||| | |||| ||||| ||||||||||||||||||||||||||
Sbjct: 772  aacggggcactcagatctgaagagctgtgccgcctagtgggccttgttggggcactcgcg 713

                                            
Query: 308  ggagaagtggccagactcgccgcaggagaagc 339
            |||||||||||| |||||||||||||||||||
Sbjct: 712  ggagaagtggccggactcgccgcaggagaagc 681

>dbj|AB066265.2| Triticum aestivum WCSP1 mRNA for cold shock protein-1, complete cds
          Length = 1029

 Score =  385 bits (194), Expect = e-104
 Identities = 290/319 (90%), Gaps = 6/319 (1%)
 Strand = Plus / Minus

                                                                        
Query: 24   ttcgataacttagttcatccaatacataagagatagatctgtgtcctcatcacagagaca 83
            |||||||||||||| ||||||| |||||   ||||||||||||||||||||||||||| |
Sbjct: 1008 ttcgataacttagtccatccaacacata---gatagatctgtgtcctcatcacagagaga 952

                                                                        
Query: 84   caacaaaataacttggatcttta--acggacaaaccaccagcaattcttctggatccaag 141
            ||||||||||||||||||||| |  ||| ||| ||||||||||||||||||||| |||||
Sbjct: 951  caacaaaataacttggatcttaacgacgaacacaccaccagcaattcttctggaaccaag 892

                                                                        
Query: 142  ctcgcatggagcagcacggggaaacgctacggcgactaatactagtactgataggtatag 201
            |||| || |||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 891  ctcggatcgagcagcagggggaaacgctacggcgactaatactagtactgataggtatag 832

                                                                        
Query: 202  g-tatgacttgatgcaggatcaggagataggaaaaggagcgaaggggaagggggcactca 260
            | ||||||||| ||||| |||||||| |||| |||||||||| ||  || ||||||||||
Sbjct: 831  ggtatgacttgctgcagaatcaggaggtaggtaaaggagcgagggtaaacggggcactca 772

                                                                        
Query: 261  gatctgacgggctgcgccgcttagtgggccttgttggggcactcgcgggagaagtggcca 320
            ||||||| | |||| ||||| |||||||||||||||||||||||||||||||||||||| 
Sbjct: 771  gatctgaagagctgtgccgcctagtgggccttgttggggcactcgcgggagaagtggccg 712

                               
Query: 321  gactcgccgcaggagaagc 339
            |||||||||||||||||||
Sbjct: 711  gactcgccgcaggagaagc 693

>dbj|AB161682.1| Triticum aestivum WCSP2 mRNA for cold shock domain protein 2,
           complete cds
          Length = 990

 Score =  214 bits (108), Expect = 2e-52
 Identities = 156/172 (90%)
 Strand = Plus / Minus

                                                                       
Query: 168 ctacggcgactaatactagtactgataggtataggtatgacttgatgcaggatcaggaga 227
           ||||||||||  |||||| ||||||||||||||||||||||||| |||||  ||||| | 
Sbjct: 789 ctacggcgacatatactaatactgataggtataggtatgacttgctgcagagtcaggcgg 730

                                                                       
Query: 228 taggaaaaggagcgaaggggaagggggcactcagatctgacgggctgcgccgcttagtgg 287
           |||||||||||||||||||||| |||| ||||||||||||||||| ||||||| |||| |
Sbjct: 729 taggaaaaggagcgaaggggaacggggaactcagatctgacgggcagcgccgcctagttg 670

                                                               
Query: 288 gccttgttggggcactcgcgggagaagtggccagactcgccgcaggagaagc 339
           | |||||||||||||||||| ||||||||||| |||||||||||||||||||
Sbjct: 669 gtcttgttggggcactcgcgcgagaagtggccggactcgccgcaggagaagc 618



 Score = 42.1 bits (21), Expect = 1.5
 Identities = 30/33 (90%)
 Strand = Plus / Minus

                                            
Query: 116 ccaccagcaattcttctggatccaagctcgcat 148
           |||||| |||| |||||||| ||||||||||||
Sbjct: 857 ccaccaacaatacttctggaaccaagctcgcat 825

>dbj|AB158409.1| Triticum aestivum GRP mRNA for putative glycine-rich protein,
           complete cds
          Length = 996

 Score =  214 bits (108), Expect = 2e-52
 Identities = 156/172 (90%)
 Strand = Plus / Minus

                                                                       
Query: 168 ctacggcgactaatactagtactgataggtataggtatgacttgatgcaggatcaggaga 227
           ||||||||||  |||||| ||||||||||||||||||||||||| |||||  ||||| | 
Sbjct: 789 ctacggcgacatatactaatactgataggtataggtatgacttgctgcagagtcaggcgg 730

                                                                       
Query: 228 taggaaaaggagcgaaggggaagggggcactcagatctgacgggctgcgccgcttagtgg 287
           |||||||||||||||||||||| |||| ||||||||||||||||| ||||||| |||| |
Sbjct: 729 taggaaaaggagcgaaggggaacggggaactcagatctgacgggcagcgccgcctagttg 670

                                                               
Query: 288 gccttgttggggcactcgcgggagaagtggccagactcgccgcaggagaagc 339
           | |||||||||||||||||| ||||||||||| |||||||||||||||||||
Sbjct: 669 gtcttgttggggcactcgcgcgagaagtggccggactcgccgcaggagaagc 618



 Score = 42.1 bits (21), Expect = 1.5
 Identities = 30/33 (90%)
 Strand = Plus / Minus

                                            
Query: 116 ccaccagcaattcttctggatccaagctcgcat 148
           |||||| |||| |||||||| ||||||||||||
Sbjct: 857 ccaccaacaatacttctggaaccaagctcgcat 825

>emb|AJ234726.1|HVU234726 Hordeum vulgare genomic DNA fragment; clone MWG2034.rev
          Length = 312

 Score = 67.9 bits (34), Expect = 3e-08
 Identities = 52/58 (89%)
 Strand = Plus / Minus

                                                                     
Query: 154 agcacggggaaacgctacggcgactaatactagtactgataggtataggtatgacttg 211
           ||||||||| ||| ||||||||||  |||||| |||||||||||||| ||||||||||
Sbjct: 58  agcacggggtaacactacggcgacatatactaatactgataggtatatgtatgacttg 1

>ref|XM_955512.1| Neurospora crassa OR74A hypothetical protein (NCU08923.1) partial
           mRNA
          Length = 552

 Score = 61.9 bits (31), Expect = 2e-06
 Identities = 37/39 (94%)
 Strand = Plus / Minus

                                                  
Query: 294 ttggggcactcgcgggagaagtggccagactcgccgcag 332
           |||||||| || |||||||||||||||||||||||||||
Sbjct: 473 ttggggcagtcacgggagaagtggccagactcgccgcag 435

>ref|XM_331314.1| Neurospora crassa OR74A hypothetical protein (NCU08923.1) partial
           mRNA
          Length = 552

 Score = 61.9 bits (31), Expect = 2e-06
 Identities = 37/39 (94%)
 Strand = Plus / Minus

                                                  
Query: 294 ttggggcactcgcgggagaagtggccagactcgccgcag 332
           |||||||| || |||||||||||||||||||||||||||
Sbjct: 473 ttggggcagtcacgggagaagtggccagactcgccgcag 435

>ref|XM_390462.1| Gibberella zeae PH-1 chromosome 1 hypothetical protein (FG10286.1)
           partial mRNA
          Length = 558

 Score = 54.0 bits (27), Expect = 4e-04
 Identities = 36/39 (92%)
 Strand = Plus / Minus

                                                  
Query: 294 ttggggcactcgcgggagaagtggccagactcgccgcag 332
           |||||||| || |||||| ||||||||||||||||||||
Sbjct: 479 ttggggcagtcacgggagtagtggccagactcgccgcag 441

>gb|AC139728.3| Carollia perspicillata clone 29G20, complete sequence
          Length = 125364

 Score = 44.1 bits (22), Expect = 0.38
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 61    tctgtgtcctcatcacagagac 82
             ||||||||||||||||||||||
Sbjct: 77211 tctgtgtcctcatcacagagac 77232

>gb|AC008207.3|AC008207 Drosophila melanogaster, chromosome 3R, region 96C-96D, BAC clone
              BACR17E12, complete sequence
          Length = 184887

 Score = 44.1 bits (22), Expect = 0.38
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                    
Query: 25     tcgataacttagttcatccaat 46
              ||||||||||||||||||||||
Sbjct: 119356 tcgataacttagttcatccaat 119335

>gb|AC008208.5|AC008208 Drosophila melanogaster, chromosome 3R, region 96D-96D, BAC clone
             BACR06L08, complete sequence
          Length = 170220

 Score = 44.1 bits (22), Expect = 0.38
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 25    tcgataacttagttcatccaat 46
             ||||||||||||||||||||||
Sbjct: 55298 tcgataacttagttcatccaat 55277

>gb|AE003751.3| Drosophila melanogaster chromosome 3R, section 89 of 118 of the
             complete sequence
          Length = 307443

 Score = 44.1 bits (22), Expect = 0.38
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 25    tcgataacttagttcatccaat 46
             ||||||||||||||||||||||
Sbjct: 59034 tcgataacttagttcatccaat 59013

>gb|DP000018.1| Carollia perspicillata target 1 genomic scaffold
          Length = 1501503

 Score = 44.1 bits (22), Expect = 0.38
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                    
Query: 61     tctgtgtcctcatcacagagac 82
              ||||||||||||||||||||||
Sbjct: 630553 tctgtgtcctcatcacagagac 630574

>gb|BT016623.1| Zea mays clone Contig456 mRNA sequence
          Length = 1039

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                        
Query: 291 ttgttggggcactcgcgggagaagtggcc 319
           ||||||||||| |||||||||| ||||||
Sbjct: 678 ttgttggggcagtcgcgggagatgtggcc 650

>gb|AC118545.20| Mus musculus strain C57BL/6J clone rp23-324o14 map 17, complete
             sequence
          Length = 236365

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 59    gatctgtgtcctcatcacaga 79
             |||||||||||||||||||||
Sbjct: 96287 gatctgtgtcctcatcacaga 96307

>gb|DQ249179.1| Homo sapiens isolate 495CLS7 haplotype HLA-B3801/HLA-Cw120301 genomic
              sequence
          Length = 338517

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                           
Query: 225    agataggaaaaggagcgaaggggaagggg 253
              ||||||||| |||| ||||||||||||||
Sbjct: 313453 agataggaagaggaacgaaggggaagggg 313481

>gb|DQ249176.1| Homo sapiens isolate 218CLS51 haplotype HLA-B140201/HLA-Cw0802 genomic
              sequence
          Length = 363675

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                           
Query: 225    agataggaaaaggagcgaaggggaagggg 253
              ||||||||| |||| ||||||||||||||
Sbjct: 328876 agataggaagaggaacgaaggggaagggg 328904

>gb|DQ249175.1| Homo sapiens isolate 144CLS7 haplotype HLA-B3801/HLA-Cw120301 genomic
              sequence
          Length = 328871

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                           
Query: 225    agataggaaaaggagcgaaggggaagggg 253
              ||||||||| |||| ||||||||||||||
Sbjct: 314432 agataggaagaggaacgaaggggaagggg 314460

>gb|DQ249173.1| Homo sapiens isolate 135CLS51 haplotype HLA-B140201/HLA-Cw0802 genomic
              sequence
          Length = 336776

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                           
Query: 225    agataggaaaaggagcgaaggggaagggg 253
              ||||||||| |||| ||||||||||||||
Sbjct: 307977 agataggaagaggaacgaaggggaagggg 308005

>emb|AL805909.5| Human DNA sequence from clone DAQB-218D23 on chromosome 6 Contains the
             HCG22 gene for HLA complex group 22 and 1 CpG island,
             complete sequence
          Length = 85801

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                          
Query: 225   agataggaaaaggagcgaaggggaagggg 253
             ||||||||| |||| ||||||||||||||
Sbjct: 67484 agataggaagaggaacgaaggggaagggg 67456

>gb|AY104445.1| Zea mays PCO063886 mRNA sequence
          Length = 540

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                        
Query: 291 ttgttggggcactcgcgggagaagtggcc 319
           ||||||||||| |||||||||| ||||||
Sbjct: 191 ttgttggggcagtcgcgggagatgtggcc 163

>gb|AC004196.1|AC004196 Homo sapiens clone UWGC:y24c079 from 6p21, complete sequence
          Length = 41308

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                          
Query: 225   agataggaaaaggagcgaaggggaagggg 253
             ||||||||| |||| ||||||||||||||
Sbjct: 18797 agataggaagaggaacgaaggggaagggg 18825

>gb|AC091777.26| Mus musculus strain C57BL/6J chromosome 17 clone rp23-355b17, complete
              sequence
          Length = 216109

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 59     gatctgtgtcctcatcacaga 79
              |||||||||||||||||||||
Sbjct: 197660 gatctgtgtcctcatcacaga 197680

>emb|AL139339.22| Human DNA sequence from clone RP11-225H22 on chromosome 10 Contains
            the 3' end of the PDCD11 gene for programmed cell death
            11, the 5' end of the NEURL gene for neuralized-like
            (Drosophila), two novel genes, the FAM26A gene for family
            with sequence similarity 26, member A, the FAM26B gene
            for family with sequence similarity 26, member B, the
            FAM26C gene for family with sequence similarity 26,
            member C and three CpG islands, complete sequence
          Length = 103826

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 60   atctgtgtcctcatcacaga 79
            ||||||||||||||||||||
Sbjct: 7043 atctgtgtcctcatcacaga 7062

>gb|CP000232.1| Moorella thermoacetica ATCC 39073, complete genome
          Length = 2628784

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 88     aaaataacttggatctttaa 107
              ||||||||||||||||||||
Sbjct: 367400 aaaataacttggatctttaa 367381


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,741,447
Number of Sequences: 3902068
Number of extensions: 2741447
Number of successful extensions: 65213
Number of sequences better than 10.0: 25
Number of HSP's better than 10.0 without gapping: 25
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 65154
Number of HSP's gapped (non-prelim): 53
length of query: 443
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 421
effective length of database: 17,147,199,772
effective search space: 7218971104012
effective search space used: 7218971104012
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)