ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbart23b08 |
|---|---|
| Clone Library Name | barley_pub |
>SDC1_HUMAN (P18827) Syndecan-1 precursor (SYND1) (CD138 antigen)| Length = 310 Score = 33.5 bits (75), Expect = 0.28 Identities = 26/81 (32%), Positives = 33/81 (40%), Gaps = 18/81 (22%) Frame = -1 Query: 392 GRPASPERRSEEGLSYPAQQAQG---------LPGHGAGTVPVQGDRRQVPAADQGARG- 243 G P++ ER +E+G S A+G G V V+ DRR DQGA G Sbjct: 183 GGPSATERAAEDGASSQLPAAEGSGEQDFTFETSGENTAVVAVEPDRRNQSPVDQGATGA 242 Query: 242 --------EELCAVVASRAVG 204 E L V+A VG Sbjct: 243 SQGLLDRKEVLGGVIAGGLVG 263
>LRC40_XENLA (Q6GPJ5) Leucine-rich repeat-containing protein 40| Length = 605 Score = 32.7 bits (73), Expect = 0.47 Identities = 16/51 (31%), Positives = 30/51 (58%) Frame = -2 Query: 433 QKMHEEHKILKQMLGGLLHQNGVLKRAFLIQHNRLKDYQDMVQERSQFKEI 281 QK++ H +KQ+ L H + ++FL+QHN+L++ D + S +E+ Sbjct: 131 QKLNISHNKIKQLPNELQHLQNL--KSFLLQHNQLEELPDSIGHLSILEEL 179
>RSP40_ARATH (P92965) Arginine/serine-rich splicing factor RSP40| Length = 350 Score = 32.3 bits (72), Expect = 0.62 Identities = 26/78 (33%), Positives = 35/78 (44%), Gaps = 3/78 (3%) Frame = -1 Query: 389 RPASPERRSEEGLSYPAQQAQGLPGHGAGTVPVQGDRRQVPAADQGARGEELCAVVASRA 210 R SPERR P ++ +G P +G G PV R++ + D G R + R Sbjct: 183 RDRSPERRRRS--PSPYKRERGSPDYGRGASPVAAYRKERTSPDYGRRRSPSPYKKSRR- 239 Query: 209 VGSPEW---HIGAPQPRR 165 GSPE+ G PRR Sbjct: 240 -GSPEYGRDRRGNDSPRR 256
>GOGB1_HUMAN (Q14789) Golgin subfamily B member 1 (Giantin) (Macrogolgin) (372| kDa Golgi complex-associated protein) (GCP372) Length = 3259 Score = 32.0 bits (71), Expect = 0.81 Identities = 15/54 (27%), Positives = 33/54 (61%) Frame = -2 Query: 364 LKRAFLIQHNRLKDYQDMVQERSQFKEIVDKYQQQIKALEERNYVLSLHLAQSD 203 +++ + +L+++++ + R+Q +VD QQ++ A E+RN +LS L Q + Sbjct: 250 MQQKLRVLQRKLEEHEESLVGRAQ---VVDLLQQELTAAEQRNQILSQQLQQME 300
>VGLD_BHV1P (P24906) Glycoprotein D precursor (Glycoprotein IV)| Length = 417 Score = 31.6 bits (70), Expect = 1.1 Identities = 22/57 (38%), Positives = 26/57 (45%), Gaps = 3/57 (5%) Frame = -1 Query: 401 ADAGRPASP---ERRSEEGLSYPAQQAQGLPGHGAGTVPVQGDRRQVPAADQGARGE 240 AD G PA P E R +EG + A G G+G P Q P A+ GA GE Sbjct: 270 ADGGSPAPPGDDEAREDEGETEDG--AAGREGNGGPPGPEGDGESQTPEANGGAEGE 324
>TBFA_EPTST (Q90501) Thread biopolymer filament alpha subunit| Length = 643 Score = 31.6 bits (70), Expect = 1.1 Identities = 13/45 (28%), Positives = 27/45 (60%) Frame = -2 Query: 346 IQHNRLKDYQDMVQERSQFKEIVDKYQQQIKALEERNYVLSLHLA 212 +QH R+++ QD+ ++F +VD Q++ LE+ N +L ++ Sbjct: 185 VQHTRIREKQDLQTLNTKFANLVD----QVRTLEQHNAILKAQIS 225
>COEA1_HUMAN (Q05707) Collagen alpha-1(XIV) chain precursor (Undulin)| Length = 1796 Score = 31.6 bits (70), Expect = 1.1 Identities = 30/108 (27%), Positives = 41/108 (37%), Gaps = 17/108 (15%) Frame = -1 Query: 413 QDTEADAGRPASPERRSEEGL----SYPAQQA-QGLPGHGAGTVPVQGDRRQVPAADQGA 249 Q + GRP SP E+G +P G PG G ++G++ QG Sbjct: 1653 QGPPGEPGRPGSPGAPGEQGPPGTPGFPGNAGVPGTPGE-RGLTGIKGEKGNPGVGTQGP 1711 Query: 248 RGEELCAVVASRA-------VGSP-----EWHIGAPQPRRLLGVGGYC 141 RG A + + GSP H+G P P+ G GYC Sbjct: 1712 RGPPGPAGPSGESRPGSPGPPGSPGPRGPPGHLGVPGPQGPSGQPGYC 1759
>COEA1_MOUSE (Q80X19) Collagen alpha-1(XIV) chain precursor| Length = 1797 Score = 31.6 bits (70), Expect = 1.1 Identities = 31/108 (28%), Positives = 41/108 (37%), Gaps = 17/108 (15%) Frame = -1 Query: 413 QDTEADAGRPASPERRSEEGL----SYPAQQA-QGLPGHGAGTVPVQGDRRQVPAADQGA 249 Q + GRP SP E+G +P G PG G V+G++ QG Sbjct: 1654 QGPPGEPGRPGSPGTPGEQGPPGTPGFPGNAGVPGTPGE-RGLTGVKGEKGNPGIGTQGP 1712 Query: 248 RGEELCAVVASRA-------VGSP-----EWHIGAPQPRRLLGVGGYC 141 RG A + + GSP H+G P P+ G GYC Sbjct: 1713 RGPPGPAGPSGESRPGSPGPPGSPGPRGPPGHLGVPGPQGPSGQPGYC 1760
>CO1A2_RANCA (O42350) Collagen alpha-2(I) chain precursor| Length = 1355 Score = 31.2 bits (69), Expect = 1.4 Identities = 32/84 (38%), Positives = 37/84 (44%) Frame = -1 Query: 419 GAQDTEADAGRPASPERRSEEGLSYPAQQAQGLPGHGAGTVPVQGDRRQVPAADQGARGE 240 GA+ DAGRP P GL A+GLPG P QG ++ PA QG G Sbjct: 421 GARGPNGDAGRPGEP------GL----LGARGLPGFSGSNGP-QG--KEGPAGPQGIEGR 467 Query: 239 ELCAVVASRAVGSPEWHIGAPQPR 168 A A A G P IG P P+ Sbjct: 468 SGAAGPAG-ARGEP-GAIGFPGPK 489
>KLOM_EISFO (O15991) Lombricine kinase (EC 2.7.3.5) (LK)| Length = 371 Score = 31.2 bits (69), Expect = 1.4 Identities = 18/73 (24%), Positives = 40/73 (54%), Gaps = 3/73 (4%) Frame = -2 Query: 448 TPDEKQKMHEEHKILKQMLGGLLHQNGVLKR---AFLIQHNRLKDYQDMVQERSQFKEIV 278 TP++++++ +H + ++ G L+ +G ++ A I HN+ K + + E Q + I Sbjct: 168 TPEQEKQLIADHFLFQKPTGHLMVNSGAVRDWPDARGIWHNKDKTFLIWINEEDQVRIIA 227 Query: 277 DKYQQQIKALEER 239 ++ +KA+ ER Sbjct: 228 MQHGGDVKAVFER 240
>CSKI1_HUMAN (Q8WXD9) Caskin-1 (CASK-interacting protein 1)| Length = 1431 Score = 30.8 bits (68), Expect = 1.8 Identities = 22/76 (28%), Positives = 28/76 (36%), Gaps = 3/76 (3%) Frame = -1 Query: 386 PASPERRSEEGLSYPAQQAQGLPGHGAGTVPVQGDRRQVPAA---DQGARGEELCAVVAS 216 P SP+ P + GLP AG P RQ PAA G + Sbjct: 1269 PVSPKPPPPPTAPKPVKAVAGLPSGSAGPSPAPSPARQPPAALAKPPGTPPSLGASPAKP 1328 Query: 215 RAVGSPEWHIGAPQPR 168 + G+P H+ A PR Sbjct: 1329 PSPGAPALHVPAKPPR 1344
>HST1_YEAST (P53685) NAD-dependent deacetylase HST1 (EC 3.5.1.-) (Homologous to| SIR2 protein 1) Length = 503 Score = 30.8 bits (68), Expect = 1.8 Identities = 12/36 (33%), Positives = 20/36 (55%) Frame = +2 Query: 26 NIFNTNHTFKYPMIFFWHISSPNSRWLGQTLPSKFH 133 N TN F P++ + + P+ + G+ LPS+FH Sbjct: 360 NTVQTNINFNSPILKSYGVLKPDMTFFGEALPSRFH 395
>SPEN_DROME (Q8SX83) Protein split ends| Length = 5560 Score = 30.8 bits (68), Expect = 1.8 Identities = 20/85 (23%), Positives = 40/85 (47%) Frame = -2 Query: 448 TPDEKQKMHEEHKILKQMLGGLLHQNGVLKRAFLIQHNRLKDYQDMVQERSQFKEIVDKY 269 T + +MH++H+ +Q +Q + ++ QH K +Q Q Q ++ + Sbjct: 3861 TSAPQHQMHQQHQAQQQQQHH--NQQHLNQQLHAQQHPTQKQHQAQQQFNQQIQQHQSQQ 3918 Query: 268 QQQIKALEERNYVLSLHLAQSDHRS 194 Q Q+ +++N HL+Q H+S Sbjct: 3919 QHQV---QQQNQAQQQHLSQQQHQS 3940
>AKAP9_HUMAN (Q99996) A-kinase anchor protein 9 (Protein kinase A-anchoring| protein 9) (PRKA9) (A-kinase anchor protein 450 kDa) (AKAP 450) (A-kinase anchor protein 350 kDa) (AKAP 350) (hgAKAP 350) (AKAP 120-like protein) (Hyperion protein) (Yotiao protei Length = 3911 Score = 30.8 bits (68), Expect = 1.8 Identities = 16/65 (24%), Positives = 39/65 (60%) Frame = -2 Query: 439 EKQKMHEEHKILKQMLGGLLHQNGVLKRAFLIQHNRLKDYQDMVQERSQFKEIVDKYQQQ 260 E+Q++ EE ++L + + + G +++ L + +L ++ ++ + Q +++ D Q+Q Sbjct: 1977 EQQQIQEERELLSRQKEAMKAEAGPVEQQLLQETEKLM--KEKLEVQCQAEKVRDDLQKQ 2034 Query: 259 IKALE 245 +KALE Sbjct: 2035 VKALE 2039
>CASP_YEAST (P34237) Protein CASP| Length = 679 Score = 30.8 bits (68), Expect = 1.8 Identities = 27/93 (29%), Positives = 43/93 (46%) Frame = -2 Query: 451 NTPDEKQKMHEEHKILKQMLGGLLHQNGVLKRAFLIQHNRLKDYQDMVQERSQFKEIVDK 272 N D + E K LL N L+ A L ++ Q+ +ER++ K+ VD+ Sbjct: 360 NEDDSDNDIRSEDKNDNTFESSLLSANKKLQ-ATLAEYRSKSTAQE--EERNELKKSVDQ 416 Query: 271 YQQQIKALEERNYVLSLHLAQSDHRSGISGHRN 173 +QQI L+E N L L + ++ +S H N Sbjct: 417 LKQQIATLKEANEKLETDLEKVEN---VSPHFN 446
>UN13C_RAT (Q62770) Unc-13 homolog C (Munc13-3)| Length = 2204 Score = 30.4 bits (67), Expect = 2.3 Identities = 18/50 (36%), Positives = 26/50 (52%), Gaps = 2/50 (4%) Frame = -1 Query: 371 RRSEEGLS--YPAQQAQGLPGHGAGTVPVQGDRRQVPAADQGARGEELCA 228 +R +EG++ Y + Q QGL G+ TVP QG+ D G +CA Sbjct: 576 QRKQEGMTALYHSPQDQGLDGN-IPTVPGQGEIENTETVDSGMSNSVVCA 624
>CSKI1_MOUSE (Q6P9K8) Caskin-1 (CASK-interacting protein 1)| Length = 1431 Score = 30.4 bits (67), Expect = 2.3 Identities = 23/81 (28%), Positives = 31/81 (38%), Gaps = 3/81 (3%) Frame = -1 Query: 386 PASPERRSEEGLSYPAQQAQGLPGHGAGTVPVQGDRRQVPAA---DQGARGEELCAVVAS 216 P SP+ PA+ GL A PV RQ PAA + + + V Sbjct: 1271 PVSPKPPPPPTAPKPAKALAGLQSSSATPSPVPSPARQPPAALIKPASSPPSQSASPVKP 1330 Query: 215 RAVGSPEWHIGAPQPRRLLGV 153 + G+P H+ A PR V Sbjct: 1331 PSPGTPALHVPAKPPRAAASV 1351
>CO1A2_HUMAN (P08123) Collagen alpha-2(I) chain precursor| Length = 1366 Score = 30.4 bits (67), Expect = 2.3 Identities = 22/61 (36%), Positives = 24/61 (39%), Gaps = 1/61 (1%) Frame = -1 Query: 419 GAQDTEADAGRPASPERRSEEGLSYPAQQAQGLPGHGAGTVPVQG-DRRQVPAADQGARG 243 G + DAGRP P GL P P G V + G D R P GARG Sbjct: 430 GVRGPNGDAGRPGEPGLMGPRGL--PGSPGNIGPAGKEGPVGLPGIDGRPGPIGPAGARG 487 Query: 242 E 240 E Sbjct: 488 E 488
>MRCKB_RAT (Q7TT49) Serine/threonine-protein kinase MRCK beta (EC 2.7.11.1)| (CDC42-binding protein kinase beta) (Myotonic dystrophy kinase-related CDC42-binding kinase beta) (Myotonic dystrophy protein kinase-like beta) (MRCK beta) (DMPK-like beta) Length = 1713 Score = 30.4 bits (67), Expect = 2.3 Identities = 19/62 (30%), Positives = 35/62 (56%) Frame = -2 Query: 427 MHEEHKILKQMLGGLLHQNGVLKRAFLIQHNRLKDYQDMVQERSQFKEIVDKYQQQIKAL 248 + +EH+ Q L GL Q + ++ H +L + + + +SQ KE+ D +QQ+ +AL Sbjct: 517 LRQEHEDSTQRLKGLEKQYRLARQEKEELHKQLVEASERL--KSQTKELKDAHQQRKRAL 574 Query: 247 EE 242 +E Sbjct: 575 QE 576
>RAD50_METMP (P62134) DNA double-strand break repair rad50 ATPase| Length = 993 Score = 30.0 bits (66), Expect = 3.1 Identities = 19/72 (26%), Positives = 38/72 (52%), Gaps = 3/72 (4%) Frame = -2 Query: 424 HEEHKILKQMLGGLLHQNGVLKRAFLIQHNRLKDYQDMVQERSQFKEIVDKYQQQIKAL- 248 +E + LK + LL + GVLK + + ++ ++E + I+DK +++IK L Sbjct: 309 YESYNKLKTIEESLLKELGVLKESLKDNKKNPDELKENLKENDEKILILDKIKEKIKELE 368 Query: 247 --EERNYVLSLH 218 E++ Y + +H Sbjct: 369 FIEKQIYEIKIH 380
>SYA_FRATT (Q5NFW7) Alanyl-tRNA synthetase (EC 6.1.1.7) (Alanine--tRNA ligase)| (AlaRS) Length = 865 Score = 30.0 bits (66), Expect = 3.1 Identities = 23/60 (38%), Positives = 31/60 (51%), Gaps = 2/60 (3%) Frame = -2 Query: 424 HEEHKILKQMLGGLLHQNGVLKRAFLIQHNRLK-DY-QDMVQERSQFKEIVDKYQQQIKA 251 H HK LK +LGG Q G L+ NRL+ D+ D RS+ ++I QQI+A Sbjct: 558 HLLHKALKLVLGGHAEQKG-----SLVDENRLRFDFTHDKAISRSKIEQIELLVNQQIRA 612
>CO6A2_CHICK (P15988) Collagen alpha-2(VI) chain precursor| Length = 1022 Score = 29.6 bits (65), Expect = 4.0 Identities = 19/55 (34%), Positives = 22/55 (40%), Gaps = 1/55 (1%) Frame = -1 Query: 398 DAGRPASPERRSEEGLSYPAQQA-QGLPGHGAGTVPVQGDRRQVPAADQGARGEE 237 DAG P R G SYP + QG G P G P QG +GE+ Sbjct: 500 DAGPPGPKGDRGRPGFSYPGPRGPQGDKGEKGQPGPKGGRGELGPKGTQGTKGEK 554
>SYA_THETN (Q8RAH4) Alanyl-tRNA synthetase (EC 6.1.1.7) (Alanine--tRNA ligase)| (AlaRS) Length = 878 Score = 29.6 bits (65), Expect = 4.0 Identities = 23/73 (31%), Positives = 41/73 (56%), Gaps = 9/73 (12%) Frame = -2 Query: 424 HEEHKILKQMLGGLLHQNGVLKRAFLIQHNRLK----DYQDMVQERSQFKEIVDK----- 272 H HK LK++LG ++Q+G L+ ++RL+ YQ + +E + K+I ++ Sbjct: 568 HLLHKALKEVLGDHVNQSG-----SLVAYDRLRFDFSHYQAVSKE--ELKKIEERVNEKI 620 Query: 271 YQQQIKALEERNY 233 Y+Q +EE+NY Sbjct: 621 YEQLPVVVEEKNY 633
>SRY_MUSSP (Q62563) Sex-determining region Y protein (Testis-determining| factor) Length = 355 Score = 29.6 bits (65), Expect = 4.0 Identities = 18/74 (24%), Positives = 34/74 (45%) Frame = -2 Query: 445 PDEKQKMHEEHKILKQMLGGLLHQNGVLKRAFLIQHNRLKDYQDMVQERSQFKEIVDKYQ 266 P +KQ+ H+ H +Q K+ F H + + + D Q++ QF + + Q Sbjct: 271 PQQKQQFHDHHHHQQQ------------KQQFHDHHQQKQQFHDHHQQQQQFHDHQQQQQ 318 Query: 265 QQIKALEERNYVLS 224 QQ ++ Y+L+ Sbjct: 319 QQQFHDQQLTYLLT 332
>H6ST1_CHICK (Q76KB2) Heparan-sulfate 6-O-sulfotransferase 1 (EC 2.8.2.-)| (HS6ST-1) (cHS6ST-1) Length = 408 Score = 29.3 bits (64), Expect = 5.2 Identities = 14/33 (42%), Positives = 24/33 (72%), Gaps = 1/33 (3%) Frame = -2 Query: 334 RLKDY-QDMVQERSQFKEIVDKYQQQIKALEER 239 +L DY +D+ Q+R Q+K +++ +Q+IK EER Sbjct: 343 QLYDYAKDLFQQRYQYKRQLERMEQRIKNREER 375
>RS22_AGABI (P46792) 40S ribosomal protein S22 (Ribosomal protein S15a)| Length = 130 Score = 29.3 bits (64), Expect = 5.2 Identities = 14/35 (40%), Positives = 22/35 (62%) Frame = -2 Query: 424 HEEHKILKQMLGGLLHQNGVLKRAFLIQHNRLKDY 320 H KI+ Q L G L++ GV+ F +QHNR++ + Sbjct: 56 HRGGKIIVQ-LNGRLNKTGVISPRFNVQHNRIEQW 89
>NPBL_CAEEL (Q95XZ5) Nipped-B-like protein pqn-85| (Prion-like-(Q/n-rich)-domain-bearing protein 85) (SCC2 homolog) Length = 2203 Score = 29.3 bits (64), Expect = 5.2 Identities = 19/66 (28%), Positives = 34/66 (51%) Frame = -2 Query: 439 EKQKMHEEHKILKQMLGGLLHQNGVLKRAFLIQHNRLKDYQDMVQERSQFKEIVDKYQQQ 260 EK++ +E + KQ L +N LKR + + RL + Q ++E+ + + + + Sbjct: 196 EKERKEQEERKRKQELEEQRKRNEELKRLRIAEEKRLLEEQQRLREQMERERLA-----E 250 Query: 259 IKALEE 242 IK LEE Sbjct: 251 IKRLEE 256
>ZIM10_MOUSE (Q6P1E1) Retinoic acid-induced protein 17 (PIAS-like protein Zimp10)| Length = 1072 Score = 29.3 bits (64), Expect = 5.2 Identities = 19/55 (34%), Positives = 24/55 (43%), Gaps = 1/55 (1%) Frame = -1 Query: 413 QDTEADAGRPASPERRSEEGLSYPAQQAQ-GLPGHGAGTVPVQGDRRQVPAADQG 252 Q+T AG P ++GL P +Q G P H +G P RQ P A G Sbjct: 950 QETMPHAGSSDQPHPSIQQGLHVPHPSSQAGPPLHHSGAPPPSQPPRQPPQAAPG 1004
>R1_ARATH (Q9SAC6) Alpha-glucan water dikinase, chloroplast precursor (EC| 2.7.9.4) (Starch-related R1 protein) (Starch excess protein 1) Length = 1399 Score = 29.3 bits (64), Expect = 5.2 Identities = 24/73 (32%), Positives = 36/73 (49%), Gaps = 3/73 (4%) Frame = -2 Query: 424 HEEHKILKQMLGGLLHQNGVLKRAFLIQHNRLKD--YQDMVQERSQFKEIVDKYQQQIKA 251 H E K ++ +L GLL L+ L H+RLKD + D+ + + I Y+Q A Sbjct: 757 HVEEKNVEPLLEGLLEARQELRPLLLKSHDRLKDLLFLDLALDSTVRTAIERGYEQLNDA 816 Query: 250 LEER-NYVLSLHL 215 E+ Y +SL L Sbjct: 817 GPEKIMYFISLVL 829
>CO3A1_RAT (P13941) Collagen alpha-1(III) chain precursor| Length = 1463 Score = 29.3 bits (64), Expect = 5.2 Identities = 29/97 (29%), Positives = 35/97 (36%), Gaps = 6/97 (6%) Frame = -1 Query: 419 GAQDTEADAGRPASPERRSEEGLSYPAQQAQGLPGH-GAGTVPVQGDRR-----QVPAAD 258 GA+ +AG P P + E+G G PG GA VP R + PA Sbjct: 443 GARGERGEAGSPGIPGPKGEDG-------KDGSPGEPGANGVPGNPGERGAPGFRGPAGP 495 Query: 257 QGARGEELCAVVASRAVGSPEWHIGAPQPRRLLGVGG 147 GA GE+ P G P P GV G Sbjct: 496 NGAPGEK-----------GPAGERGGPGPAGPRGVAG 521
>ARS2_CRIGR (Q60436) Arsenite-resistance protein 2 (Fragment)| Length = 290 Score = 29.3 bits (64), Expect = 5.2 Identities = 18/52 (34%), Positives = 23/52 (44%), Gaps = 14/52 (26%) Frame = -1 Query: 398 DAGRPASPERRSEE--------------GLSYPAQQAQGLPGHGAGTVPVQG 285 DA RPA PE + + GL YP Q QGL +G +P+ G Sbjct: 185 DAKRPALPEMKPAQPPGPAQILPPGLTPGLPYPHQTPQGLMPYGQPALPIFG 236
>ISPG_CHLPN (Q9Z8H0) 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase (EC| 1.17.4.3) (1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase) Length = 613 Score = 28.9 bits (63), Expect = 6.8 Identities = 16/50 (32%), Positives = 28/50 (56%), Gaps = 2/50 (4%) Frame = -2 Query: 325 DYQDMV--QERSQFKEIVDKYQQQIKALEERNYVLSLHLAQSDHRSGISG 182 +Y+D+V + S K +V Y+Q K L+ R ++ LHL ++ G+ G Sbjct: 201 NYRDVVFSMKSSNPKIMVTAYRQLAKDLDARGWLYPLHLGVTEAGMGVDG 250
>RRBP1_CANFA (Q28298) Ribosome-binding protein 1 (180 kDa ribosome receptor)| (RRp) Length = 1534 Score = 28.9 bits (63), Expect = 6.8 Identities = 20/67 (29%), Positives = 32/67 (47%), Gaps = 1/67 (1%) Frame = -1 Query: 437 KAENA*GAQDTEADAGRPASPERRSEEGLSYPAQQAQGLPGHGAGTVPVQGDRRQVPAA- 261 + + A GAQ+ + S + R EEG ++A+G P G VQ ++V A Sbjct: 408 QGKKAEGAQN-QGKKAEGTSSQGRKEEGTPNLGKKAEGSPNQGKKVEVVQNQSKKVEGAP 466 Query: 260 DQGARGE 240 +QG + E Sbjct: 467 NQGKKAE 473
>TAGH_BACAN (Q81K31) Teichoic acids export ATP-binding protein tagH (EC| 3.6.3.40) Length = 549 Score = 28.9 bits (63), Expect = 6.8 Identities = 17/81 (20%), Positives = 37/81 (45%) Frame = -2 Query: 442 DEKQKMHEEHKILKQMLGGLLHQNGVLKRAFLIQHNRLKDYQDMVQERSQFKEIVDKYQQ 263 D+ + E+ K + + L +A + + ++K+Y D+ + + E + KY Q Sbjct: 184 DKMNEFKEQGKTIFFISHSLSQVKSFCTKALWLHYGQVKEYGDIKEIVDHYDEFLKKYNQ 243 Query: 262 QIKALEERNYVLSLHLAQSDH 200 ++EER + ++Q H Sbjct: 244 M--SVEERKDLRKEQISQFQH 262
>RAPA_PASMU (Q9CK01) RNA polymerase-associated protein rapA (EC 3.6.1.-)| (ATP-dependent helicase hepA) Length = 967 Score = 28.9 bits (63), Expect = 6.8 Identities = 18/64 (28%), Positives = 32/64 (50%), Gaps = 4/64 (6%) Frame = -2 Query: 382 LHQNGVLKRAFLIQHNRLKDYQDMVQERSQFKEIVDKYQQQIK----ALEERNYVLSLHL 215 L Q R L+ +R DYQ VQE+ Q++ + + Q + + E+N++ L L Sbjct: 322 LGQESHFARLSLLDPDRFYDYQAFVQEQQQYQPVAEAVQSLLADKPLSAVEKNHISDL-L 380 Query: 214 AQSD 203 ++ D Sbjct: 381 SEQD 384
>MRCKB_HUMAN (Q9Y5S2) Serine/threonine-protein kinase MRCK beta (EC 2.7.11.1)| (CDC42-binding protein kinase beta) (Myotonic dystrophy kinase-related CDC42-binding kinase beta) (Myotonic dystrophy protein kinase-like beta) (MRCK beta) (DMPK-like beta) Length = 1711 Score = 28.9 bits (63), Expect = 6.8 Identities = 19/62 (30%), Positives = 35/62 (56%) Frame = -2 Query: 427 MHEEHKILKQMLGGLLHQNGVLKRAFLIQHNRLKDYQDMVQERSQFKEIVDKYQQQIKAL 248 + +E + Q L GL Q+ V+++ H +L + + + +SQ KE+ D +QQ+ AL Sbjct: 517 LRQEREDSTQRLRGLEKQHRVVRQEKEELHKQLVEASERL--KSQAKELKDAHQQRKLAL 574 Query: 247 EE 242 +E Sbjct: 575 QE 576
>CO3A1_MOUSE (P08121) Collagen alpha-1(III) chain precursor| Length = 1464 Score = 28.9 bits (63), Expect = 6.8 Identities = 30/93 (32%), Positives = 35/93 (37%), Gaps = 2/93 (2%) Frame = -1 Query: 419 GAQDTEADAGRPASPERRSEEGL--SYPAQQAQGLPGHGAGTVPVQGDRRQVPAADQGAR 246 GA+ +AG P P + E+G S A GLPG AG G R PA G Sbjct: 443 GARGERGEAGSPGIPGPKGEDGKDGSPGEPGANGLPG-AAGERGPSGFRG--PAGPNGIP 499 Query: 245 GEELCAVVASRAVGSPEWHIGAPQPRRLLGVGG 147 GE+ P G P P GV G Sbjct: 500 GEK-----------GPPGERGGPGPAGPRGVAG 521
>CO1A2_RAT (P02466) Collagen alpha-2(I) chain precursor| Length = 1372 Score = 28.9 bits (63), Expect = 6.8 Identities = 21/61 (34%), Positives = 23/61 (37%), Gaps = 1/61 (1%) Frame = -1 Query: 419 GAQDTEADAGRPASPERRSEEGLSYPAQQAQGLPGHGAGTVPVQG-DRRQVPAADQGARG 243 G + DAGRP P GL P P G V + G D R P G RG Sbjct: 436 GVRGPNGDAGRPGEPGLMGPRGL--PGSPGNVGPAGKEGPVGLPGIDGRPGPIGPAGPRG 493 Query: 242 E 240 E Sbjct: 494 E 494
>TRI47_HUMAN (Q96LD4) Tripartite motif protein 47 (Gene overexpressed in| astrocytoma protein) (RING finger protein 100) Length = 638 Score = 28.9 bits (63), Expect = 6.8 Identities = 13/29 (44%), Positives = 16/29 (55%) Frame = -3 Query: 159 RGRRLLHPP*NLEGRVCPSHLELGEEMCQ 73 RG RL+ P LE +CP HL E C+ Sbjct: 166 RGHRLVPPLRRLEESLCPRHLRPXERYCR 194
>SPT20_YEAST (P50875) Transcription factor SPT20| Length = 604 Score = 28.5 bits (62), Expect = 8.9 Identities = 17/54 (31%), Positives = 31/54 (57%), Gaps = 3/54 (5%) Frame = -2 Query: 349 LIQHNRLKDYQDMVQ--ERSQFKE-IVDKYQQQIKALEERNYVLSLHLAQSDHR 197 L++ N L Y DM+ + ++F + I +++ +I L +RN LS+ L +HR Sbjct: 284 LLKPNDLTTYYDMMSYADNARFSDSIYQQFESEILTLTKRNLSLSVPLNPYEHR 337
>CD1B2_SHEEP (Q29422) T-cell surface glycoprotein CD1b-2 precursor (CD1b-2| antigen) (SCD1B-42) (Antigen IAH-CC14) Length = 333 Score = 28.5 bits (62), Expect = 8.9 Identities = 17/42 (40%), Positives = 24/42 (57%), Gaps = 2/42 (4%) Frame = -1 Query: 272 VPAADQGARGEELCAVVASRAVGSP--EWHIGAPQPRRLLGV 153 +PA D G RG++LCA+++ S E + PR LLGV Sbjct: 150 MPAPDSGNRGQKLCALLSQYQGTSDIIERLVSETCPRYLLGV 191
>LEU3_PICST (O94114) 3-isopropylmalate dehydrogenase (EC 1.1.1.85) (Beta-IPM| dehydrogenase) (IMDH) (3-IPM-DH) Length = 373 Score = 28.5 bits (62), Expect = 8.9 Identities = 14/40 (35%), Positives = 18/40 (45%) Frame = -1 Query: 284 DRRQVPAADQGARGEELCAVVASRAVGSPEWHIGAPQPRR 165 D VP D +L V AVG P+W GA +P + Sbjct: 55 DSTGVPLPDDSLAAAKLSDAVLLGAVGGPKWGTGAVRPEQ 94
>CHK1_DROME (O61661) Serine/threonine-protein kinase grp (EC 2.7.11.1) (Protein| grapes) (Chk1 homolog) Length = 512 Score = 28.5 bits (62), Expect = 8.9 Identities = 19/49 (38%), Positives = 23/49 (46%), Gaps = 2/49 (4%) Frame = -2 Query: 445 PDEKQKMHEEHKILKQMLGGL--LHQNGVLKRAFLIQHNRLKDYQDMVQ 305 PD HE + Q+L GL LHQ G+ R L N L D D V+ Sbjct: 111 PDVGMPQHEAQRYFTQLLSGLNYLHQRGIAHRD-LKPENLLLDEHDNVK 158
>MRCKB_MOUSE (Q7TT50) Serine/threonine-protein kinase MRCK beta (EC 2.7.11.1)| (CDC42-binding protein kinase beta) (Myotonic dystrophy kinase-related CDC42-binding kinase beta) (Myotonic dystrophy protein kinase-like beta) (MRCK beta) (DMPK-like beta) Length = 1713 Score = 28.5 bits (62), Expect = 8.9 Identities = 18/62 (29%), Positives = 34/62 (54%) Frame = -2 Query: 427 MHEEHKILKQMLGGLLHQNGVLKRAFLIQHNRLKDYQDMVQERSQFKEIVDKYQQQIKAL 248 + +EH+ L GL Q + ++ H +L + + + +SQ KE+ D +QQ+ +AL Sbjct: 517 LRQEHEDSTHRLKGLEKQYRLARQEKEELHKQLVEASERL--KSQTKELKDAHQQRKRAL 574 Query: 247 EE 242 +E Sbjct: 575 QE 576
>CO4A2_CAEEL (P17140) Collagen alpha-2(IV) chain precursor (Lethal protein 2)| Length = 1758 Score = 28.5 bits (62), Expect = 8.9 Identities = 17/41 (41%), Positives = 25/41 (60%), Gaps = 2/41 (4%) Frame = -1 Query: 395 AGRPASPERRSEEGLSYPA--QQAQGLPGHGAGTVPVQGDR 279 +G+P P + E+GLS PA + +G PG+ AG +GDR Sbjct: 282 SGQPGLPGMKGEKGLSGPAGPRGKEGRPGN-AGPPGFKGDR 321
>DTX2_MOUSE (Q8R3P2) Protein deltex-2 (Deltex-2) (Deltex2) (mDTX2)| Length = 619 Score = 28.5 bits (62), Expect = 8.9 Identities = 23/74 (31%), Positives = 34/74 (45%), Gaps = 2/74 (2%) Frame = -1 Query: 386 PASPERRSEEGLSYPAQQAQGLPGHGAGTVPVQGDRRQVPAADQGARGEELCAVVAS--R 213 P+ P S S+P+ + PG TVPV Q+P A +R ++ A + S Sbjct: 292 PSGPSTSSGASASFPSGPSSSSPGSAPTTVPV-----QMPKA---SRVQQALAGMTSVLS 343 Query: 212 AVGSPEWHIGAPQP 171 A+G P AP+P Sbjct: 344 AIGLPVCLSRAPRP 357
>CO1A2_MOUSE (Q01149) Collagen alpha-2(I) chain precursor| Length = 1372 Score = 28.5 bits (62), Expect = 8.9 Identities = 21/61 (34%), Positives = 23/61 (37%), Gaps = 1/61 (1%) Frame = -1 Query: 419 GAQDTEADAGRPASPERRSEEGLSYPAQQAQGLPGHGAGTVPVQG-DRRQVPAADQGARG 243 G + DAGRP P GL P P G V + G D R P G RG Sbjct: 436 GIRGPNGDAGRPGEPGLMGPRGL--PGSPGNVGPSGKEGPVGLPGIDGRPGPIGPAGPRG 493 Query: 242 E 240 E Sbjct: 494 E 494 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 62,508,023 Number of Sequences: 219361 Number of extensions: 1256315 Number of successful extensions: 4161 Number of sequences better than 10.0: 47 Number of HSP's better than 10.0 without gapping: 4000 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 4151 length of database: 80,573,946 effective HSP length: 102 effective length of database: 58,199,124 effective search space used: 3026354448 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
