>JHD1_ASPFU (Q4WHB7) JmjC domain-containing histone demethylation protein 1 (EC|
           1.14.11.-)
          Length = 1418

 Score = 31.2 bits (69), Expect = 0.74
 Identities = 26/66 (39%), Positives = 32/66 (48%)
 Frame = +3

Query: 42  VYSSTHRLLSHHRLAQQNSSATDDLFFHTNDASSPSEKYLPGCPPSGSSATPVMFRAPSS 221
           VYSST+R  SH R +   SS+T D       A+SP+   L   PPS    TP M   PS 
Sbjct: 66  VYSSTNRG-SHGRTSHGRSSSTIDTLATIALATSPTFAPLSYRPPS-QDPTPAMPLFPSQ 123

Query: 222 GVRIPE 239
            +   E
Sbjct: 124 SIESTE 129

>CIC_MOUSE (Q924A2) Protein capicua homolog|
          Length = 1606

 Score = 30.0 bits (66), Expect = 1.6
 Identities = 13/26 (50%), Positives = 18/26 (69%)
 Frame = +3

Query: 147  SEKYLPGCPPSGSSATPVMFRAPSSG 224
            +E  LPG PP+G +ATPV   +P+ G
Sbjct: 1529 AEAPLPGPPPTGMAATPVPTPSPAGG 1554

>MKL2_MOUSE (P59759) MKL/myocardin-like protein 2 (Myocardin-related|
           transcription factor B) (MRTF-B)
          Length = 1080

 Score = 30.0 bits (66), Expect = 1.6
 Identities = 16/37 (43%), Positives = 22/37 (59%)
 Frame = +3

Query: 135 ASSPSEKYLPGCPPSGSSATPVMFRAPSSGVRIPEFL 245
           A+SPSE  +   PP  +++TP  F + S  V  PEFL
Sbjct: 198 AASPSEPKVSASPPPVTASTPAQFTSVSPAV--PEFL 232

>XERD_STRA5 (Q8DY96) Tyrosine recombinase xerD|
          Length = 246

 Score = 30.0 bits (66), Expect = 1.6
 Identities = 11/20 (55%), Positives = 12/20 (60%)
 Frame = +1

Query: 7   FEHRGSPNEHTWFILQLTDY 66
           FEH G P    WF  QLTD+
Sbjct: 178 FEHNGKPYSRQWFFNQLTDF 197

>XERD_STRA3 (Q8E3W1) Tyrosine recombinase xerD|
          Length = 246

 Score = 30.0 bits (66), Expect = 1.6
 Identities = 11/20 (55%), Positives = 12/20 (60%)
 Frame = +1

Query: 7   FEHRGSPNEHTWFILQLTDY 66
           FEH G P    WF  QLTD+
Sbjct: 178 FEHNGKPYSRQWFFNQLTDF 197

>MOLR_ECOLI (P33345) Molybdate metabolism regulator|
          Length = 1264

 Score = 28.9 bits (63), Expect = 3.6
 Identities = 15/28 (53%), Positives = 22/28 (78%), Gaps = 2/28 (7%)
 Frame = +3

Query: 42   VYSSTHRLLSHHRLAQQNSSAT--DDLF 119
            VYS+ ++LL+  R+A+ NSS+T  DDLF
Sbjct: 1067 VYSAENQLLACFRVAEDNSSSTADDDLF 1094

>POLG_KUNJM (P14335) Genome polyprotein [Contains: Capsid protein C (Core|
            protein); Envelope protein M (Matrix protein); Major
            envelope protein E; Nonstructural protein 1 (NS1);
            Nonstructural protein 2A (NS2A); Flavivirin protease NS2B
            regulatory subunit;
          Length = 3433

 Score = 28.5 bits (62), Expect = 4.8
 Identities = 18/54 (33%), Positives = 25/54 (46%)
 Frame = +3

Query: 54   THRLLSHHRLAQQNSSATDDLFFHTNDASSPSEKYLPGCPPSGSSATPVMFRAP 215
            THRL+S HR+   N    D+  F T+ AS  +  Y+      G +A   M   P
Sbjct: 1772 THRLMSPHRVPNYNLFVMDEAHF-TDPASIAARGYISTRVELGEAAAIFMTATP 1824

>MUA3_CAEEL (P34576) Transmembrane cell adhesion receptor mua-3 precursor|
           (Muscle attachment abnormal protein 3)
          Length = 3767

 Score = 28.5 bits (62), Expect = 4.8
 Identities = 14/38 (36%), Positives = 18/38 (47%), Gaps = 1/38 (2%)
 Frame = -3

Query: 225 PRRRALGTSLALRC-CRKAGSPASISPKARRHRSCEKI 115
           P  R +   +   C CR+     SI PKAR  R C K+
Sbjct: 431 PEARCVDALIGYECLCREGYLDTSIDPKARPGRKCRKL 468

>FINC_CANFA (Q28275) Fibronectin (FN) (Fragment)|
          Length = 522

 Score = 28.5 bits (62), Expect = 4.8
 Identities = 16/58 (27%), Positives = 24/58 (41%), Gaps = 3/58 (5%)
 Frame = +3

Query: 57  HRLLSHHRLAQQNSSATDDLFFHTNDASSP---SEKYLPGCPPSGSSATPVMFRAPSS 221
           H L  H      N+S   +    T  + +P   S +Y+  C P G    P+ FR P +
Sbjct: 309 HHLYPHVMGLNPNASTGQEALSQTTISWTPFQESSEYIISCHPVGIDEEPLQFRVPGT 366

>DRL20_ARATH (Q9SH22) Putative disease resistance protein At1g63360|
          Length = 884

 Score = 28.1 bits (61), Expect = 6.2
 Identities = 14/37 (37%), Positives = 20/37 (54%)
 Frame = +3

Query: 45  YSSTHRLLSHHRLAQQNSSATDDLFFHTNDASSPSEK 155
           + S+HRLLSH RL +   S+   L  H    S  ++K
Sbjct: 680 FLSSHRLLSHSRLLEIYGSSVSSLNRHLESLSVSTDK 716

>POLG_WNV (P06935) Genome polyprotein [Contains: Capsid protein C (Core|
            protein); Envelope protein M (Matrix protein); Major
            envelope protein E; Nonstructural protein 1 (NS1);
            Nonstructural protein 2A (NS2A); Flavivirin protease NS2B
            regulatory subunit; F
          Length = 3430

 Score = 28.1 bits (61), Expect = 6.2
 Identities = 18/54 (33%), Positives = 25/54 (46%)
 Frame = +3

Query: 54   THRLLSHHRLAQQNSSATDDLFFHTNDASSPSEKYLPGCPPSGSSATPVMFRAP 215
            THRL+S HR+   N    D+  F T+ AS  +  Y+      G +A   M   P
Sbjct: 1768 THRLMSPHRVPNYNLFIMDEAHF-TDPASIAARGYIATKVELGEAAAIFMTATP 1820

>FINC_BOVIN (P07589) Fibronectin (FN)|
          Length = 2265

 Score = 27.7 bits (60), Expect = 8.1
 Identities = 16/58 (27%), Positives = 24/58 (41%), Gaps = 3/58 (5%)
 Frame = +3

Query: 57   HRLLSHHRLAQQNSSATDDLFFHTNDASSP---SEKYLPGCPPSGSSATPVMFRAPSS 221
            H L  H      N+S   +    T  + +P   S +Y+  C P G    P+ FR P +
Sbjct: 1975 HHLYPHVVGLNPNASTGQEALSQTTISWTPFQESSEYIISCHPVGIDEEPLQFRVPGT 2032

>VSX1_MOUSE (Q91V10) Visual system homeobox 1 (Transcription factor VSX1)|
           (Retinal inner nuclear layer homeobox protein)
           (Homeodomain protein RINX)
          Length = 363

 Score = 27.7 bits (60), Expect = 8.1
 Identities = 11/19 (57%), Positives = 13/19 (68%)
 Frame = +3

Query: 129 NDASSPSEKYLPGCPPSGS 185
           +DA S S    PGCPP+GS
Sbjct: 8   SDARSRSRALAPGCPPTGS 26

>NPBL_MOUSE (Q6KCD5) Nipped-B-like protein (Delangin homolog) (SCC2 homolog)|
          Length = 2798

 Score = 27.7 bits (60), Expect = 8.1
 Identities = 22/56 (39%), Positives = 23/56 (41%)
 Frame = +3

Query: 48  SSTHRLLSHHRLAQQNSSATDDLFFHTNDASSPSEKYLPGCPPSGSSATPVMFRAP 215
           SS   L   HRL    SS   D     N AS P     P C P+GS  TP   R P
Sbjct: 243 SSDDYLHMVHRL----SSDDGDSSTMRNAASFPLRSPQPVCSPAGSDGTPKGSRPP 294

>NIPBL_HUMAN (Q6KC79) Nipped-B-like protein (Delangin) (SCC2 homolog)|
          Length = 2804

 Score = 27.7 bits (60), Expect = 8.1
 Identities = 22/56 (39%), Positives = 23/56 (41%)
 Frame = +3

Query: 48  SSTHRLLSHHRLAQQNSSATDDLFFHTNDASSPSEKYLPGCPPSGSSATPVMFRAP 215
           SS   L   HRL    SS   D     N AS P     P C P+GS  TP   R P
Sbjct: 243 SSEDYLHMVHRL----SSDDGDSSTMRNAASFPLRSPQPVCSPAGSEGTPKGSRPP 294

>YNR6_YEAST (P53882) Hypothetical 67.4 kDa protein in RPS3-PSD1 intergenic|
           region
          Length = 636

 Score = 27.7 bits (60), Expect = 8.1
 Identities = 20/59 (33%), Positives = 27/59 (45%)
 Frame = +3

Query: 30  RTYLVYSSTHRLLSHHRLAQQNSSATDDLFFHTNDASSPSEKYLPGCPPSGSSATPVMF 206
           RT L  S T  L      +  NS +TD +F  T+    P +  L   PP  S+ATP  +
Sbjct: 9   RTTLGESDTISLSFSEPSSSLNSRSTDVVFASTSTLV-PQQGSLTSLPPVSSTATPTYY 66

>LIE2_STREX (P83913) Leupeptin-inactivating enzyme 2 precursor (EC 3.4.24.-)|
           (LIE2)
          Length = 1090

 Score = 27.7 bits (60), Expect = 8.1
 Identities = 19/45 (42%), Positives = 23/45 (51%), Gaps = 4/45 (8%)
 Frame = +3

Query: 102 ATDDLFFHTNDA----SSPSEKYLPGCPPSGSSATPVMFRAPSSG 224
           AT DLF  T  A    S P++   P C PSG +    M  +PSSG
Sbjct: 487 ATCDLFNKTKAAWDGISVPAQTADPTCTPSGQNNDFSMSLSPSSG 531


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 40,152,209
Number of Sequences: 219361
Number of extensions: 757202
Number of successful extensions: 2517
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 2449
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2515
length of database: 80,573,946
effective HSP length: 60
effective length of database: 67,412,286
effective search space used: 1617894864
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)