>STUB_DROME (Q05319) Serine proteinase stubble (EC 3.4.21.-) (Protein|
           stubble-stubbloid) [Contains: Serine proteinase stubble
           non-catalytic chain; Serine proteinase stubble catalytic
           chain]
          Length = 787

 Score = 31.2 bits (69), Expect = 1.2
 Identities = 24/81 (29%), Positives = 35/81 (43%)
 Frame = +3

Query: 174 LAPGVRPASFSSSFHGPSNWSGNFLRSPTTTXXXXXXXXXXXXXTTSLRTVPRSATFLRF 353
           L+PG   A+ SSS H PS+ +     + +TT             TT+ RT     T    
Sbjct: 388 LSPGTSLAASSSS-HWPSSTTSTTSSTTSTTTTTTTTRRTTTPTTTTRRTTTNKPTRPYQ 446

Query: 354 TPS*NTSSASDNLPSLHSAPT 416
            P+  TSS+S +  S  +  T
Sbjct: 447 RPTTATSSSSTSTTSSKTPTT 467

>FMT_TREPA (O83737) Methionyl-tRNA formyltransferase (EC 2.1.2.9)|
          Length = 319

 Score = 29.3 bits (64), Expect = 4.6
 Identities = 17/59 (28%), Positives = 27/59 (45%)
 Frame = +2

Query: 176 GTRCEAGILLKLLPWTVELVRELLA*PDHHPSRRPTLASLLESHYQLTHCAQICHLLAL 352
           GT     +L +L     +LV ++L   + H     TLA   + H Q T C ++C  + L
Sbjct: 164 GTETTGALLSRLSLVAADLVDDVLVGVERH-----TLAPAAQDHSQATFCGKLCREMGL 217

>ALF_PLAFA (P14223) Fructose-bisphosphate aldolase (EC 4.1.2.13) (41 kDa|
           antigen)
          Length = 369

 Score = 29.3 bits (64), Expect = 4.6
 Identities = 18/55 (32%), Positives = 25/55 (45%)
 Frame = +2

Query: 275 RPTLASLLESHYQLTHCAQICHLLALYPLVEHVLRL*QPPLAAQRPHHACVCCAL 439
           +PT  S+ E+ + L   A IC    L P+VE       P + A  PH   VC  +
Sbjct: 165 KPTDLSIHETAWGLARYASICQQNRLVPIVE-------PEILADGPHSIEVCAVV 212

>ALF_PLAF7 (Q7KQL9) Fructose-bisphosphate aldolase (EC 4.1.2.13)|
          Length = 369

 Score = 29.3 bits (64), Expect = 4.6
 Identities = 18/55 (32%), Positives = 25/55 (45%)
 Frame = +2

Query: 275 RPTLASLLESHYQLTHCAQICHLLALYPLVEHVLRL*QPPLAAQRPHHACVCCAL 439
           +PT  S+ E+ + L   A IC    L P+VE       P + A  PH   VC  +
Sbjct: 165 KPTDLSIHETAWGLARYASICQQNRLVPIVE-------PEILADGPHSIEVCAVV 212

>YB1E_SCHPO (P87179) Serine-rich protein C30B4.01c precursor|
          Length = 374

 Score = 29.3 bits (64), Expect = 4.6
 Identities = 27/131 (20%), Positives = 52/131 (39%), Gaps = 11/131 (8%)
 Frame = +3

Query: 66  TSTKWSPPDVAANGHTAAAVFXXXXXXXXXXXXXXLLAPGVRPASFSSSFHGPSNWSGNF 245
           T+T  SP   +++  ++++                  +     +S SSS    S+ S + 
Sbjct: 149 TTTTTSPSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSV 208

Query: 246 LRSPTTTXXXXXXXXXXXXXTTSLR--------TVPRSATFLR---FTPS*NTSSASDNL 392
             + +T+             ++S R        T   S+TF+     TPS ++SS S  +
Sbjct: 209 PITSSTSSSHSSSSSSSSSSSSSSRPSSSSSFITTMSSSTFISTVTVTPSSSSSSTSSEV 268

Query: 393 PSLHSAPTMHA 425
           PS  +A  ++A
Sbjct: 269 PSSTAALALNA 279

>RF1_ORYSA (Q76C99) Rf1 protein, mitochondrial precursor (PPR protein)|
           (Fertility restorer) (Restorer for CMS)
          Length = 791

 Score = 29.3 bits (64), Expect = 4.6
 Identities = 14/45 (31%), Positives = 22/45 (48%)
 Frame = -2

Query: 442 PECATYACMVGALCSEGRLSEAEDVFYEGVKRKKVADLGTVRKLV 308
           P+  TY+ ++  LC  GR  EA  +F    KR    ++ T   L+
Sbjct: 299 PDVVTYSLLMDYLCKNGRCMEARKIFDSMTKRGLKPEITTYGTLL 343

>BSC1_YEAST (Q12140) Bypass of stop codon protein 1|
          Length = 328

 Score = 28.9 bits (63), Expect = 6.0
 Identities = 21/79 (26%), Positives = 31/79 (39%)
 Frame = +3

Query: 204 SSSFHGPSNWSGNFLRSPTTTXXXXXXXXXXXXXTTSLRTVPRSATFLRFTPS*NTSSAS 383
           +SS    S  + +   S TTT             TTS  T   S T    T S  TSS++
Sbjct: 167 TSSITTSSTTTSSTTTSSTTTSSSTTSSSTTSSSTTSSSTTSSSTTSSSTTSSSTTSSST 226

Query: 384 DNLPSLHSAPTMHAYVAHS 440
            +  +  S+ T  +  + S
Sbjct: 227 TSSSTTSSSTTSSSTTSSS 245



 Score = 28.9 bits (63), Expect = 6.0
 Identities = 22/79 (27%), Positives = 31/79 (39%)
 Frame = +3

Query: 204 SSSFHGPSNWSGNFLRSPTTTXXXXXXXXXXXXXTTSLRTVPRSATFLRFTPS*NTSSAS 383
           SSS    S  + +   S TTT             TTS  T   S T    T S  TSS++
Sbjct: 162 SSSITTSSITTSSTTTSSTTTSSTTTSSSTTSSSTTSSSTTSSSTTSSSTTSSSTTSSST 221

Query: 384 DNLPSLHSAPTMHAYVAHS 440
            +  +  S+ T  +  + S
Sbjct: 222 TSSSTTSSSTTSSSTTSSS 240

>MUC3A_HUMAN (Q02505) Mucin-3A (Intestinal mucin 3A) (Fragments)|
          Length = 213

 Score = 28.5 bits (62), Expect = 7.9
 Identities = 24/82 (29%), Positives = 32/82 (39%), Gaps = 3/82 (3%)
 Frame = +3

Query: 180 PGVRPASFSSSF---HGPSNWSGNFLRSPTTTXXXXXXXXXXXXXTTSLRTVPRSATFLR 350
           P     SF+SS      PS+ + +F  S TTT              +    +  + T   
Sbjct: 8   PSHSTPSFTSSITTTEAPSSSTPSFTSSITTTDSIVTTETTYHSTPSFTSLITITETTSH 67

Query: 351 FTPS*NTSSASDNLPSLHSAPT 416
            TPS  TS  S   PS HS P+
Sbjct: 68  STPSYTTSITSTKTPS-HSTPS 88


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 52,305,232
Number of Sequences: 219361
Number of extensions: 780204
Number of successful extensions: 2110
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 2024
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2094
length of database: 80,573,946
effective HSP length: 102
effective length of database: 58,199,124
effective search space used: 2677159704
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)