ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbart23a05
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1ref|NM_196821.1| Oryza sativa (japonica cultivar-group) putative... 70 8e-09
2gb|AC025905.3| Oryza sativa (japonica cultivar-group) chromosome... 70 8e-09
3dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic D... 70 8e-09
4dbj|AK071137.1| Oryza sativa (japonica cultivar-group) cDNA clon... 70 8e-09
5gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome... 70 8e-09
6gb|AY105408.1| Zea mays PCO132099 mRNA sequence 64 5e-07
7gb|AY365035.1| Zea mays pollen germination-related protein-like ... 62 2e-06
8dbj|AK104810.1| Oryza sativa (japonica cultivar-group) cDNA clon... 62 2e-06
9gb|BT016752.1| Zea mays clone Contig585 mRNA sequence 56 1e-04
10ref|XM_470211.1| Oryza sativa (japonica cultivar-group), predic... 44 0.43
11gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 44 0.43
12gb|AC090485.3|AC090485 Genomic Sequence for Oryza sativa, Nippon... 44 0.43
13dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 44 0.43
14dbj|AK120297.1| Oryza sativa (japonica cultivar-group) cDNA clon... 44 0.43
15gb|AE011914.1| Xanthomonas axonopodis pv. citri str. 306, secti... 42 1.7
16dbj|BA000035.2| Corynebacterium efficiens YS-314 DNA, complete g... 42 1.7
17ref|NM_189622.1| Oryza sativa (japonica cultivar-group), mRNA 40 6.7
18gb|AE017283.1| Propionibacterium acnes KPA171202, complete genome 40 6.7
19gb|AC140315.3| Mus musculus BAC clone RP23-396I19 from chromosom... 40 6.7
20ref|NM_031197.1| Mus musculus solute carrier family 2 (facilitat... 40 6.7
21gb|AC121268.7| Mus musculus chromosome 3, clone RP24-468O23, com... 40 6.7
22emb|AL162407.14| Human DNA sequence from clone RP11-393E20 on ch... 40 6.7
23emb|CR354549.7| Zebrafish DNA sequence from clone CH211-151O16 i... 40 6.7
24gb|BC034675.1| Mus musculus solute carrier family 2 (facilitated... 40 6.7
25dbj|AK149532.1| Mus musculus adult male liver tumor cDNA, RIKEN ... 40 6.7
26dbj|AK165430.1| Mus musculus adult male kidney cDNA, RIKEN full-... 40 6.7
27gb|AC144908.17| Mus musculus chromosome 5, clone RP23-102O19, co... 40 6.7
28dbj|AK005068.1| Mus musculus adult male liver cDNA, RIKEN full-l... 40 6.7
29gb|AF313771.1| Drosophila helvetica M-type P element, complete cds 40 6.7
30dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 40 6.7
31dbj|AP002816.1| Oryza sativa (japonica cultivar-group) genomic D... 40 6.7
32dbj|AP002486.1| Oryza sativa (japonica cultivar-group) genomic D... 40 6.7
33gb|AC005886.2|AC005886 b240g16, complete sequence 40 6.7
34dbj|AP004469.1| Lotus japonicus genomic DNA, chromosome 4, clone... 40 6.7
35emb|X16986.1|MURGLUC Murine mRNA for liver glucose transporter 40 6.7
36emb|X15684.1|MMGLUTRA Mouse mRNA for liver-type glucose transpor... 40 6.7
37emb|X60990.1|DBPTRANSP D.bifasciata p-transposon (clone jbifM3) 40 6.7

>ref|NM_196821.1| Oryza sativa (japonica cultivar-group) putative PGPD14 protein
           (pollen germination related protein) (OSJNBa0018F16.5),
           mRNA
          Length = 1263

 Score = 69.9 bits (35), Expect = 8e-09
 Identities = 50/55 (90%)
 Strand = Plus / Minus

                                                                  
Query: 442 gtctccctggtgttgtaagagctgcacccgggacacttttgcgccaggacgtgga 496
           ||||||| ||||||||| |||||||| ||||| ||||| ||||||||||||||||
Sbjct: 895 gtctcccgggtgttgtaggagctgcatccggggcacttctgcgccaggacgtgga 841



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>gb|AC025905.3| Oryza sativa (japonica cultivar-group) chromosome 10 clone nbxb0018F16,
             complete sequence
          Length = 179157

 Score = 69.9 bits (35), Expect = 8e-09
 Identities = 50/55 (90%)
 Strand = Plus / Plus

                                                                    
Query: 442   gtctccctggtgttgtaagagctgcacccgggacacttttgcgccaggacgtgga 496
             ||||||| ||||||||| |||||||| ||||| ||||| ||||||||||||||||
Sbjct: 70068 gtctcccgggtgttgtaggagctgcatccggggcacttctgcgccaggacgtgga 70122



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>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete
                sequence
          Length = 22685906

 Score = 69.9 bits (35), Expect = 8e-09
 Identities = 50/55 (90%)
 Strand = Plus / Plus

                                                                       
Query: 442      gtctccctggtgttgtaagagctgcacccgggacacttttgcgccaggacgtgga 496
                ||||||| ||||||||| |||||||| ||||| ||||| ||||||||||||||||
Sbjct: 16191179 gtctcccgggtgttgtaggagctgcatccggggcacttctgcgccaggacgtgga 16191233



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>dbj|AK071137.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023077E12, full
           insert sequence
          Length = 1283

 Score = 69.9 bits (35), Expect = 8e-09
 Identities = 50/55 (90%)
 Strand = Plus / Minus

                                                                  
Query: 442 gtctccctggtgttgtaagagctgcacccgggacacttttgcgccaggacgtgga 496
           ||||||| ||||||||| |||||||| ||||| ||||| ||||||||||||||||
Sbjct: 909 gtctcccgggtgttgtaggagctgcatccggggcacttctgcgccaggacgtgga 855



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>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence
          Length = 22698374

 Score = 69.9 bits (35), Expect = 8e-09
 Identities = 50/55 (90%)
 Strand = Plus / Plus

                                                                       
Query: 442      gtctccctggtgttgtaagagctgcacccgggacacttttgcgccaggacgtgga 496
                ||||||| ||||||||| |||||||| ||||| ||||| ||||||||||||||||
Sbjct: 16199420 gtctcccgggtgttgtaggagctgcatccggggcacttctgcgccaggacgtgga 16199474



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>gb|AY105408.1| Zea mays PCO132099 mRNA sequence
          Length = 795

 Score = 63.9 bits (32), Expect = 5e-07
 Identities = 53/60 (88%)
 Strand = Plus / Minus

                                                                       
Query: 437 ccctcgtctccctggtgttgtaagagctgcacccgggacacttttgcgccaggacgtgga 496
           |||||||||||| ||||||||| ||||||||| |||| ||||| ||| |||| |||||||
Sbjct: 585 ccctcgtctcccgggtgttgtacgagctgcacgcggggcacttgtgccccagcacgtgga 526



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>gb|AY365035.1| Zea mays pollen germination-related protein-like mRNA sequence
          Length = 1106

 Score = 61.9 bits (31), Expect = 2e-06
 Identities = 55/63 (87%)
 Strand = Plus / Minus

                                                                       
Query: 434 cgcccctcgtctccctggtgttgtaagagctgcacccgggacacttttgcgccaggacgt 493
           |||||||||||| || |||||||||||||||||| || || ||||| ||||||| || ||
Sbjct: 754 cgcccctcgtctgccgggtgttgtaagagctgcatccagggcacttgtgcgccaagatgt 695

              
Query: 494 gga 496
           |||
Sbjct: 694 gga 692



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>dbj|AK104810.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-040-G01, full
           insert sequence
          Length = 1284

 Score = 61.9 bits (31), Expect = 2e-06
 Identities = 49/55 (89%)
 Strand = Plus / Minus

                                                                  
Query: 442 gtctccctggtgttgtaagagctgcacccgggacacttttgcgccaggacgtgga 496
           ||||||| ||||||||| |||||||| ||||| |||||  |||||||||||||||
Sbjct: 905 gtctcccgggtgttgtaggagctgcatccggggcacttccgcgccaggacgtgga 851



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>gb|BT016752.1| Zea mays clone Contig585 mRNA sequence
          Length = 1421

 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 52/60 (86%)
 Strand = Plus / Minus

                                                                        
Query: 437  ccctcgtctccctggtgttgtaagagctgcacccgggacacttttgcgccaggacgtgga 496
            |||||||||||| ||||||||| || |||||| |||| ||||| ||| |||| |||||||
Sbjct: 1085 ccctcgtctcccgggtgttgtacgaactgcacgcggggcacttgtgccccagcacgtgga 1026



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>ref|XM_470211.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 1050

 Score = 44.1 bits (22), Expect = 0.43
 Identities = 28/30 (93%)
 Strand = Plus / Minus

                                         
Query: 450 ggtgttgtaagagctgcacccgggacactt 479
           |||||||||||||||||| ||||| |||||
Sbjct: 988 ggtgttgtaagagctgcatccggggcactt 959



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>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score = 44.1 bits (22), Expect = 0.43
 Identities = 28/30 (93%)
 Strand = Plus / Minus

                                             
Query: 450     ggtgttgtaagagctgcacccgggacactt 479
               |||||||||||||||||| ||||| |||||
Sbjct: 2533901 ggtgttgtaagagctgcatccggggcactt 2533872



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>gb|AC090485.3|AC090485 Genomic Sequence for Oryza sativa, Nipponbare strain, clone
              OSJNBa0067N01, from chromosome 3, complete sequence
          Length = 159636

 Score = 44.1 bits (22), Expect = 0.43
 Identities = 28/30 (93%)
 Strand = Plus / Plus

                                            
Query: 450    ggtgttgtaagagctgcacccgggacactt 479
              |||||||||||||||||| ||||| |||||
Sbjct: 136193 ggtgttgtaagagctgcatccggggcactt 136222



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>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
               sequence
          Length = 36192742

 Score = 44.1 bits (22), Expect = 0.43
 Identities = 28/30 (93%)
 Strand = Plus / Minus

                                             
Query: 450     ggtgttgtaagagctgcacccgggacactt 479
               |||||||||||||||||| ||||| |||||
Sbjct: 2534011 ggtgttgtaagagctgcatccggggcactt 2533982



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>dbj|AK120297.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013051O08, full
            insert sequence
          Length = 2604

 Score = 44.1 bits (22), Expect = 0.43
 Identities = 28/30 (93%)
 Strand = Plus / Minus

                                          
Query: 450  ggtgttgtaagagctgcacccgggacactt 479
            |||||||||||||||||| ||||| |||||
Sbjct: 2252 ggtgttgtaagagctgcatccggggcactt 2223



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>gb|AE011914.1| Xanthomonas axonopodis pv. citri str. 306,  section 292 of 469 of the
            complete genome
          Length = 10174

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                     
Query: 203  cggtggccttgctgtcggcgacggc 227
            |||||||||||||||||||| ||||
Sbjct: 5815 cggtggccttgctgtcggcggcggc 5791



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>dbj|BA000035.2| Corynebacterium efficiens YS-314 DNA, complete genome
          Length = 3147090

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 147   ccgatttattcaaccgcagcg 167
             |||||||||||||||||||||
Sbjct: 56000 ccgatttattcaaccgcagcg 55980



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>ref|NM_189622.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 753

 Score = 40.1 bits (20), Expect = 6.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 384 gtcgtctcctcctcgccgtc 403
           ||||||||||||||||||||
Sbjct: 161 gtcgtctcctcctcgccgtc 142



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>gb|AE017283.1| Propionibacterium acnes KPA171202, complete genome
          Length = 2560265

 Score = 40.1 bits (20), Expect = 6.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 192    atgagcaaccacggtggcct 211
              ||||||||||||||||||||
Sbjct: 618915 atgagcaaccacggtggcct 618934



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>gb|AC140315.3| Mus musculus BAC clone RP23-396I19 from chromosome 3, complete sequence
          Length = 205029

 Score = 40.1 bits (20), Expect = 6.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 364    tgagtagtgtctgttgtact 383
              ||||||||||||||||||||
Sbjct: 118198 tgagtagtgtctgttgtact 118179



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>ref|NM_031197.1| Mus musculus solute carrier family 2 (facilitated glucose
            transporter), member 2 (Slc2a2), mRNA
          Length = 2491

 Score = 40.1 bits (20), Expect = 6.7
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 232  aattcctggcctcttcagagagtg 255
            |||||||||| |||||||||||||
Sbjct: 1607 aattcctggcgtcttcagagagtg 1630



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>gb|AC121268.7| Mus musculus chromosome 3, clone RP24-468O23, complete sequence
          Length = 176264

 Score = 40.1 bits (20), Expect = 6.7
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 232   aattcctggcctcttcagagagtg 255
             |||||||||| |||||||||||||
Sbjct: 18188 aattcctggcgtcttcagagagtg 18165



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>emb|AL162407.14| Human DNA sequence from clone RP11-393E20 on chromosome 10 Contains the
             3' end of the gene for a novel NHL repeat domain
             containing protein (FLJ33312 FLJ25621 DKFZp313F0131
             FLJ30653 FLJ36994 FLJ20147), complete sequence
          Length = 114145

 Score = 40.1 bits (20), Expect = 6.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 362   agtgagtagtgtctgttgta 381
             ||||||||||||||||||||
Sbjct: 94477 agtgagtagtgtctgttgta 94496



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>emb|CR354549.7| Zebrafish DNA sequence from clone CH211-151O16 in linkage group 25,
             complete sequence
          Length = 136578

 Score = 40.1 bits (20), Expect = 6.7
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 360   tgagtgagtagtgtctgttgtact 383
             |||||||| |||||||||||||||
Sbjct: 42367 tgagtgagaagtgtctgttgtact 42390



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>gb|BC034675.1| Mus musculus solute carrier family 2 (facilitated glucose
            transporter), member 2, mRNA (cDNA clone MGC:25413
            IMAGE:4236331), complete cds
          Length = 2468

 Score = 40.1 bits (20), Expect = 6.7
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 232  aattcctggcctcttcagagagtg 255
            |||||||||| |||||||||||||
Sbjct: 1577 aattcctggcgtcttcagagagtg 1600



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>dbj|AK149532.1| Mus musculus adult male liver tumor cDNA, RIKEN full-length
           enriched library, clone:C730032F11 product:solute
           carrier family 2 (facilitated glucose transporter),
           member 2, full insert sequence
          Length = 1651

 Score = 40.1 bits (20), Expect = 6.7
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 232 aattcctggcctcttcagagagtg 255
           |||||||||| |||||||||||||
Sbjct: 771 aattcctggcgtcttcagagagtg 794



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>dbj|AK165430.1| Mus musculus adult male kidney cDNA, RIKEN full-length enriched
            library, clone:F520013J12 product:solute carrier family 2
            (facilitated glucose transporter), member 2, full insert
            sequence
          Length = 2503

 Score = 40.1 bits (20), Expect = 6.7
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 232  aattcctggcctcttcagagagtg 255
            |||||||||| |||||||||||||
Sbjct: 1593 aattcctggcgtcttcagagagtg 1616



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>gb|AC144908.17| Mus musculus chromosome 5, clone RP23-102O19, complete sequence
          Length = 212299

 Score = 40.1 bits (20), Expect = 6.7
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 357   gactgagtgagtagtgtctgttgt 380
             ||||||||| ||||||||||||||
Sbjct: 96906 gactgagtgggtagtgtctgttgt 96883



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>dbj|AK005068.1| Mus musculus adult male liver cDNA, RIKEN full-length enriched
            library, clone:1300019L19 product:solute carrier family 2
            (facilitated glucose transporter), member 2, full insert
            sequence
          Length = 2538

 Score = 40.1 bits (20), Expect = 6.7
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 232  aattcctggcctcttcagagagtg 255
            |||||||||| |||||||||||||
Sbjct: 1659 aattcctggcgtcttcagagagtg 1682



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>gb|AF313771.1| Drosophila helvetica M-type P element, complete cds
          Length = 2807

 Score = 40.1 bits (20), Expect = 6.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 369  agtgtctgttgtactgtcgt 388
            ||||||||||||||||||||
Sbjct: 1359 agtgtctgttgtactgtcgt 1340



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>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
               sequence
          Length = 43261740

 Score = 40.1 bits (20), Expect = 6.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 384     gtcgtctcctcctcgccgtc 403
               ||||||||||||||||||||
Sbjct: 4595220 gtcgtctcctcctcgccgtc 4595201



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>dbj|AP002816.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
            clone:P0695A04
          Length = 158133

 Score = 40.1 bits (20), Expect = 6.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 384  gtcgtctcctcctcgccgtc 403
            ||||||||||||||||||||
Sbjct: 2436 gtcgtctcctcctcgccgtc 2417



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>dbj|AP002486.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
              clone:P0510F03
          Length = 149699

 Score = 40.1 bits (20), Expect = 6.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 384    gtcgtctcctcctcgccgtc 403
              ||||||||||||||||||||
Sbjct: 129907 gtcgtctcctcctcgccgtc 129888



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>gb|AC005886.2|AC005886 b240g16, complete sequence
          Length = 134011

 Score = 40.1 bits (20), Expect = 6.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 362   agtgagtagtgtctgttgta 381
             ||||||||||||||||||||
Sbjct: 81534 agtgagtagtgtctgttgta 81515



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>dbj|AP004469.1| Lotus japonicus genomic DNA, chromosome 4, clone:LjT15D01, TM0004a,
             complete sequence
          Length = 92631

 Score = 40.1 bits (20), Expect = 6.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 277   tgcagcaagcactagcagct 296
             ||||||||||||||||||||
Sbjct: 67539 tgcagcaagcactagcagct 67558



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>emb|X16986.1|MURGLUC Murine mRNA for liver glucose transporter
          Length = 2183

 Score = 40.1 bits (20), Expect = 6.7
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 232  aattcctggcctcttcagagagtg 255
            |||||||||| |||||||||||||
Sbjct: 1597 aattcctggcgtcttcagagagtg 1620



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>emb|X15684.1|MMGLUTRA Mouse mRNA for liver-type glucose transporter protein
          Length = 2491

 Score = 40.1 bits (20), Expect = 6.7
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 232  aattcctggcctcttcagagagtg 255
            |||||||||| |||||||||||||
Sbjct: 1607 aattcctggcgtcttcagagagtg 1630



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>emb|X60990.1|DBPTRANSP D.bifasciata p-transposon (clone jbifM3)
          Length = 2935

 Score = 40.1 bits (20), Expect = 6.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 369  agtgtctgttgtactgtcgt 388
            ||||||||||||||||||||
Sbjct: 1398 agtgtctgttgtactgtcgt 1379


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,892,492
Number of Sequences: 3902068
Number of extensions: 3892492
Number of successful extensions: 74228
Number of sequences better than 10.0: 37
Number of HSP's better than 10.0 without gapping: 37
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 74018
Number of HSP's gapped (non-prelim): 210
length of query: 496
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 474
effective length of database: 17,147,199,772
effective search space: 8127772691928
effective search space used: 8127772691928
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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