Clone Name | rbart23a05 |
---|---|
Clone Library Name | barley_pub |
>ref|NM_196821.1| Oryza sativa (japonica cultivar-group) putative PGPD14 protein (pollen germination related protein) (OSJNBa0018F16.5), mRNA Length = 1263 Score = 69.9 bits (35), Expect = 8e-09 Identities = 50/55 (90%) Strand = Plus / Minus Query: 442 gtctccctggtgttgtaagagctgcacccgggacacttttgcgccaggacgtgga 496 ||||||| ||||||||| |||||||| ||||| ||||| |||||||||||||||| Sbjct: 895 gtctcccgggtgttgtaggagctgcatccggggcacttctgcgccaggacgtgga 841
>gb|AC025905.3| Oryza sativa (japonica cultivar-group) chromosome 10 clone nbxb0018F16, complete sequence Length = 179157 Score = 69.9 bits (35), Expect = 8e-09 Identities = 50/55 (90%) Strand = Plus / Plus Query: 442 gtctccctggtgttgtaagagctgcacccgggacacttttgcgccaggacgtgga 496 ||||||| ||||||||| |||||||| ||||| ||||| |||||||||||||||| Sbjct: 70068 gtctcccgggtgttgtaggagctgcatccggggcacttctgcgccaggacgtgga 70122
>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete sequence Length = 22685906 Score = 69.9 bits (35), Expect = 8e-09 Identities = 50/55 (90%) Strand = Plus / Plus Query: 442 gtctccctggtgttgtaagagctgcacccgggacacttttgcgccaggacgtgga 496 ||||||| ||||||||| |||||||| ||||| ||||| |||||||||||||||| Sbjct: 16191179 gtctcccgggtgttgtaggagctgcatccggggcacttctgcgccaggacgtgga 16191233
>dbj|AK071137.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023077E12, full insert sequence Length = 1283 Score = 69.9 bits (35), Expect = 8e-09 Identities = 50/55 (90%) Strand = Plus / Minus Query: 442 gtctccctggtgttgtaagagctgcacccgggacacttttgcgccaggacgtgga 496 ||||||| ||||||||| |||||||| ||||| ||||| |||||||||||||||| Sbjct: 909 gtctcccgggtgttgtaggagctgcatccggggcacttctgcgccaggacgtgga 855
>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence Length = 22698374 Score = 69.9 bits (35), Expect = 8e-09 Identities = 50/55 (90%) Strand = Plus / Plus Query: 442 gtctccctggtgttgtaagagctgcacccgggacacttttgcgccaggacgtgga 496 ||||||| ||||||||| |||||||| ||||| ||||| |||||||||||||||| Sbjct: 16199420 gtctcccgggtgttgtaggagctgcatccggggcacttctgcgccaggacgtgga 16199474
>gb|AY105408.1| Zea mays PCO132099 mRNA sequence Length = 795 Score = 63.9 bits (32), Expect = 5e-07 Identities = 53/60 (88%) Strand = Plus / Minus Query: 437 ccctcgtctccctggtgttgtaagagctgcacccgggacacttttgcgccaggacgtgga 496 |||||||||||| ||||||||| ||||||||| |||| ||||| ||| |||| ||||||| Sbjct: 585 ccctcgtctcccgggtgttgtacgagctgcacgcggggcacttgtgccccagcacgtgga 526
>gb|AY365035.1| Zea mays pollen germination-related protein-like mRNA sequence Length = 1106 Score = 61.9 bits (31), Expect = 2e-06 Identities = 55/63 (87%) Strand = Plus / Minus Query: 434 cgcccctcgtctccctggtgttgtaagagctgcacccgggacacttttgcgccaggacgt 493 |||||||||||| || |||||||||||||||||| || || ||||| ||||||| || || Sbjct: 754 cgcccctcgtctgccgggtgttgtaagagctgcatccagggcacttgtgcgccaagatgt 695 Query: 494 gga 496 ||| Sbjct: 694 gga 692
>dbj|AK104810.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-040-G01, full insert sequence Length = 1284 Score = 61.9 bits (31), Expect = 2e-06 Identities = 49/55 (89%) Strand = Plus / Minus Query: 442 gtctccctggtgttgtaagagctgcacccgggacacttttgcgccaggacgtgga 496 ||||||| ||||||||| |||||||| ||||| ||||| ||||||||||||||| Sbjct: 905 gtctcccgggtgttgtaggagctgcatccggggcacttccgcgccaggacgtgga 851
>gb|BT016752.1| Zea mays clone Contig585 mRNA sequence Length = 1421 Score = 56.0 bits (28), Expect = 1e-04 Identities = 52/60 (86%) Strand = Plus / Minus Query: 437 ccctcgtctccctggtgttgtaagagctgcacccgggacacttttgcgccaggacgtgga 496 |||||||||||| ||||||||| || |||||| |||| ||||| ||| |||| ||||||| Sbjct: 1085 ccctcgtctcccgggtgttgtacgaactgcacgcggggcacttgtgccccagcacgtgga 1026
>ref|XM_470211.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1050 Score = 44.1 bits (22), Expect = 0.43 Identities = 28/30 (93%) Strand = Plus / Minus Query: 450 ggtgttgtaagagctgcacccgggacactt 479 |||||||||||||||||| ||||| ||||| Sbjct: 988 ggtgttgtaagagctgcatccggggcactt 959
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 44.1 bits (22), Expect = 0.43 Identities = 28/30 (93%) Strand = Plus / Minus Query: 450 ggtgttgtaagagctgcacccgggacactt 479 |||||||||||||||||| ||||| ||||| Sbjct: 2533901 ggtgttgtaagagctgcatccggggcactt 2533872
>gb|AC090485.3|AC090485 Genomic Sequence for Oryza sativa, Nipponbare strain, clone OSJNBa0067N01, from chromosome 3, complete sequence Length = 159636 Score = 44.1 bits (22), Expect = 0.43 Identities = 28/30 (93%) Strand = Plus / Plus Query: 450 ggtgttgtaagagctgcacccgggacactt 479 |||||||||||||||||| ||||| ||||| Sbjct: 136193 ggtgttgtaagagctgcatccggggcactt 136222
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 44.1 bits (22), Expect = 0.43 Identities = 28/30 (93%) Strand = Plus / Minus Query: 450 ggtgttgtaagagctgcacccgggacactt 479 |||||||||||||||||| ||||| ||||| Sbjct: 2534011 ggtgttgtaagagctgcatccggggcactt 2533982
>dbj|AK120297.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013051O08, full insert sequence Length = 2604 Score = 44.1 bits (22), Expect = 0.43 Identities = 28/30 (93%) Strand = Plus / Minus Query: 450 ggtgttgtaagagctgcacccgggacactt 479 |||||||||||||||||| ||||| ||||| Sbjct: 2252 ggtgttgtaagagctgcatccggggcactt 2223
>gb|AE011914.1| Xanthomonas axonopodis pv. citri str. 306, section 292 of 469 of the complete genome Length = 10174 Score = 42.1 bits (21), Expect = 1.7 Identities = 24/25 (96%) Strand = Plus / Minus Query: 203 cggtggccttgctgtcggcgacggc 227 |||||||||||||||||||| |||| Sbjct: 5815 cggtggccttgctgtcggcggcggc 5791
>dbj|BA000035.2| Corynebacterium efficiens YS-314 DNA, complete genome Length = 3147090 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 147 ccgatttattcaaccgcagcg 167 ||||||||||||||||||||| Sbjct: 56000 ccgatttattcaaccgcagcg 55980
>ref|NM_189622.1| Oryza sativa (japonica cultivar-group), mRNA Length = 753 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 384 gtcgtctcctcctcgccgtc 403 |||||||||||||||||||| Sbjct: 161 gtcgtctcctcctcgccgtc 142
>gb|AE017283.1| Propionibacterium acnes KPA171202, complete genome Length = 2560265 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 192 atgagcaaccacggtggcct 211 |||||||||||||||||||| Sbjct: 618915 atgagcaaccacggtggcct 618934
>gb|AC140315.3| Mus musculus BAC clone RP23-396I19 from chromosome 3, complete sequence Length = 205029 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 364 tgagtagtgtctgttgtact 383 |||||||||||||||||||| Sbjct: 118198 tgagtagtgtctgttgtact 118179
>ref|NM_031197.1| Mus musculus solute carrier family 2 (facilitated glucose transporter), member 2 (Slc2a2), mRNA Length = 2491 Score = 40.1 bits (20), Expect = 6.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 232 aattcctggcctcttcagagagtg 255 |||||||||| ||||||||||||| Sbjct: 1607 aattcctggcgtcttcagagagtg 1630
>gb|AC121268.7| Mus musculus chromosome 3, clone RP24-468O23, complete sequence Length = 176264 Score = 40.1 bits (20), Expect = 6.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 232 aattcctggcctcttcagagagtg 255 |||||||||| ||||||||||||| Sbjct: 18188 aattcctggcgtcttcagagagtg 18165
>emb|AL162407.14| Human DNA sequence from clone RP11-393E20 on chromosome 10 Contains the 3' end of the gene for a novel NHL repeat domain containing protein (FLJ33312 FLJ25621 DKFZp313F0131 FLJ30653 FLJ36994 FLJ20147), complete sequence Length = 114145 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 362 agtgagtagtgtctgttgta 381 |||||||||||||||||||| Sbjct: 94477 agtgagtagtgtctgttgta 94496
>emb|CR354549.7| Zebrafish DNA sequence from clone CH211-151O16 in linkage group 25, complete sequence Length = 136578 Score = 40.1 bits (20), Expect = 6.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 360 tgagtgagtagtgtctgttgtact 383 |||||||| ||||||||||||||| Sbjct: 42367 tgagtgagaagtgtctgttgtact 42390
>gb|BC034675.1| Mus musculus solute carrier family 2 (facilitated glucose transporter), member 2, mRNA (cDNA clone MGC:25413 IMAGE:4236331), complete cds Length = 2468 Score = 40.1 bits (20), Expect = 6.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 232 aattcctggcctcttcagagagtg 255 |||||||||| ||||||||||||| Sbjct: 1577 aattcctggcgtcttcagagagtg 1600
>dbj|AK149532.1| Mus musculus adult male liver tumor cDNA, RIKEN full-length enriched library, clone:C730032F11 product:solute carrier family 2 (facilitated glucose transporter), member 2, full insert sequence Length = 1651 Score = 40.1 bits (20), Expect = 6.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 232 aattcctggcctcttcagagagtg 255 |||||||||| ||||||||||||| Sbjct: 771 aattcctggcgtcttcagagagtg 794
>dbj|AK165430.1| Mus musculus adult male kidney cDNA, RIKEN full-length enriched library, clone:F520013J12 product:solute carrier family 2 (facilitated glucose transporter), member 2, full insert sequence Length = 2503 Score = 40.1 bits (20), Expect = 6.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 232 aattcctggcctcttcagagagtg 255 |||||||||| ||||||||||||| Sbjct: 1593 aattcctggcgtcttcagagagtg 1616
>gb|AC144908.17| Mus musculus chromosome 5, clone RP23-102O19, complete sequence Length = 212299 Score = 40.1 bits (20), Expect = 6.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 357 gactgagtgagtagtgtctgttgt 380 ||||||||| |||||||||||||| Sbjct: 96906 gactgagtgggtagtgtctgttgt 96883
>dbj|AK005068.1| Mus musculus adult male liver cDNA, RIKEN full-length enriched library, clone:1300019L19 product:solute carrier family 2 (facilitated glucose transporter), member 2, full insert sequence Length = 2538 Score = 40.1 bits (20), Expect = 6.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 232 aattcctggcctcttcagagagtg 255 |||||||||| ||||||||||||| Sbjct: 1659 aattcctggcgtcttcagagagtg 1682
>gb|AF313771.1| Drosophila helvetica M-type P element, complete cds Length = 2807 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 369 agtgtctgttgtactgtcgt 388 |||||||||||||||||||| Sbjct: 1359 agtgtctgttgtactgtcgt 1340
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 384 gtcgtctcctcctcgccgtc 403 |||||||||||||||||||| Sbjct: 4595220 gtcgtctcctcctcgccgtc 4595201
>dbj|AP002816.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0695A04 Length = 158133 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 384 gtcgtctcctcctcgccgtc 403 |||||||||||||||||||| Sbjct: 2436 gtcgtctcctcctcgccgtc 2417
>dbj|AP002486.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0510F03 Length = 149699 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 384 gtcgtctcctcctcgccgtc 403 |||||||||||||||||||| Sbjct: 129907 gtcgtctcctcctcgccgtc 129888
>gb|AC005886.2|AC005886 b240g16, complete sequence Length = 134011 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 362 agtgagtagtgtctgttgta 381 |||||||||||||||||||| Sbjct: 81534 agtgagtagtgtctgttgta 81515
>dbj|AP004469.1| Lotus japonicus genomic DNA, chromosome 4, clone:LjT15D01, TM0004a, complete sequence Length = 92631 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 277 tgcagcaagcactagcagct 296 |||||||||||||||||||| Sbjct: 67539 tgcagcaagcactagcagct 67558
>emb|X16986.1|MURGLUC Murine mRNA for liver glucose transporter Length = 2183 Score = 40.1 bits (20), Expect = 6.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 232 aattcctggcctcttcagagagtg 255 |||||||||| ||||||||||||| Sbjct: 1597 aattcctggcgtcttcagagagtg 1620
>emb|X15684.1|MMGLUTRA Mouse mRNA for liver-type glucose transporter protein Length = 2491 Score = 40.1 bits (20), Expect = 6.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 232 aattcctggcctcttcagagagtg 255 |||||||||| ||||||||||||| Sbjct: 1607 aattcctggcgtcttcagagagtg 1630
>emb|X60990.1|DBPTRANSP D.bifasciata p-transposon (clone jbifM3) Length = 2935 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 369 agtgtctgttgtactgtcgt 388 |||||||||||||||||||| Sbjct: 1398 agtgtctgttgtactgtcgt 1379 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 3,892,492 Number of Sequences: 3902068 Number of extensions: 3892492 Number of successful extensions: 74228 Number of sequences better than 10.0: 37 Number of HSP's better than 10.0 without gapping: 37 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 74018 Number of HSP's gapped (non-prelim): 210 length of query: 496 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 474 effective length of database: 17,147,199,772 effective search space: 8127772691928 effective search space used: 8127772691928 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)