ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
menu 
| Clone Name | rbart23a03 |
|---|---|
| Clone Library Name | barley_pub |
>dbj|AK120755.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023007B06, full insert sequence Length = 1927 Score = 204 bits (103), Expect = 2e-49 Identities = 223/263 (84%) Strand = Plus / Minus Query: 247 tacagggaagaaccggcacggcgacgcctcgtggcgtttgatgtagcgatctgaccaagc 306 ||||||| |||||| ||||| |||||||| || ||||| || ||||| |||||||||||| Sbjct: 1621 tacagggcagaacctgcacgccgacgccttgttgcgttagaggtagcaatctgaccaagc 1562 Query: 307 tcctcgtcctggttagatgtcactcgttctctcacaggggtgtaatgtctcagccaaacg 366 | ||| ||||| | | || ||||||||||| ||||| |||||||| ||||||||||| Sbjct: 1561 tgttcgccctggcttgctgggactcgttctctgacaggtgtgtaatgcctcagccaaaca 1502 Query: 367 cccgtgtatacctgttgcggcctcatgattttattgtcagggtcatcaagtgactccttc 426 || ||||||||||| || |||||||| || ||| |||| || |||||||||||||| ||| Sbjct: 1501 ccagtgtatacctgctgaggcctcataatcttagtgtctggatcatcaagtgactctttc 1442 Query: 427 caatgtgctaaccagccagccatccgaggaatcgcaaataacacggggaaaatttctgta 486 |||||||||||||| |||||||| |||||||| ||||| | || ||||| | |||||| Sbjct: 1441 caatgtgctaaccaaccagccatgcgaggaattgcaaacagaacagggaagaactctgta 1382 Query: 487 gggaatcccattgctctatatat 509 |||||||||||||| |||||||| Sbjct: 1381 gggaatcccattgccctatatat 1359
>dbj|AK058734.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-019-G01, full insert sequence Length = 1117 Score = 204 bits (103), Expect = 2e-49 Identities = 223/263 (84%) Strand = Plus / Minus Query: 247 tacagggaagaaccggcacggcgacgcctcgtggcgtttgatgtagcgatctgaccaagc 306 ||||||| |||||| ||||| |||||||| || ||||| || ||||| |||||||||||| Sbjct: 871 tacagggcagaacctgcacgccgacgccttgttgcgttagaggtagcaatctgaccaagc 812 Query: 307 tcctcgtcctggttagatgtcactcgttctctcacaggggtgtaatgtctcagccaaacg 366 | ||| ||||| | | || ||||||||||| ||||| |||||||| ||||||||||| Sbjct: 811 tgttcgccctggcttgctgggactcgttctctgacaggtgtgtaatgcctcagccaaaca 752 Query: 367 cccgtgtatacctgttgcggcctcatgattttattgtcagggtcatcaagtgactccttc 426 || ||||||||||| || |||||||| || ||| |||| || |||||||||||||| ||| Sbjct: 751 ccagtgtatacctgctgaggcctcataatcttagtgtctggatcatcaagtgactctttc 692 Query: 427 caatgtgctaaccagccagccatccgaggaatcgcaaataacacggggaaaatttctgta 486 |||||||||||||| |||||||| |||||||| ||||| | || ||||| | |||||| Sbjct: 691 caatgtgctaaccaaccagccatgcgaggaattgcaaacagaacagggaagaactctgta 632 Query: 487 gggaatcccattgctctatatat 509 |||||||||||||| |||||||| Sbjct: 631 gggaatcccattgccctatatat 609
>gb|BT016785.1| Zea mays clone Contig618 mRNA sequence Length = 1899 Score = 167 bits (84), Expect = 4e-38 Identities = 219/264 (82%) Strand = Plus / Minus Query: 243 cttctacagggaagaaccggcacggcgacgcctcgtggcgtttgatgtagcgatctgacc 302 ||||||||||| |||||| |||||||| ||||| || |||||||| || || | |||||| Sbjct: 1578 cttctacagggcagaaccagcacggcggcgcctagttgcgtttgaggtggcaacctgacc 1519 Query: 303 aagctcctcgtcctggttagatgtcactcgttctctcacaggggtgtaatgtctcagcca 362 ||| ||||| |||| | ||| |||||||||||| || ||||| || || || ||||| Sbjct: 1518 aagttcctcactctggcttgatagcactcgttctctgacgggggtatagtgcctaagcca 1459 Query: 363 aacgcccgtgtatacctgttgcggcctcatgattttattgtcagggtcatcaagtgactc 422 | ||| |||||||||||||| ||||| || || ||| ||||||| ||||| |||||||| Sbjct: 1458 gaagccggtgtatacctgttggggccttataatcttagtgtcaggatcatcgagtgactc 1399 Query: 423 cttccaatgtgctaaccagccagccatccgaggaatcgcaaataacacggggaaaatttc 482 |||||||| |||| ||||||| |||| |||||||| ||||| | ||| || |||| ||| Sbjct: 1398 tttccaatgcgctagccagccacccatgcgaggaatagcaaacagcacaggaaaaaattc 1339 Query: 483 tgtagggaatcccattgctctata 506 |||||||||||||||||| ||||| Sbjct: 1338 tgtagggaatcccattgccctata 1315
>gb|AY105153.1| Zea mays PCO138377 mRNA sequence Length = 2018 Score = 167 bits (84), Expect = 4e-38 Identities = 219/264 (82%) Strand = Plus / Minus Query: 243 cttctacagggaagaaccggcacggcgacgcctcgtggcgtttgatgtagcgatctgacc 302 ||||||||||| |||||| |||||||| ||||| || |||||||| || || | |||||| Sbjct: 1645 cttctacagggcagaaccagcacggcggcgcctagttgcgtttgaggtggcaacctgacc 1586 Query: 303 aagctcctcgtcctggttagatgtcactcgttctctcacaggggtgtaatgtctcagcca 362 ||| ||||| |||| | ||| |||||||||||| || ||||| || || || ||||| Sbjct: 1585 aagttcctcactctggcttgatagcactcgttctctgacgggggtatagtgcctaagcca 1526 Query: 363 aacgcccgtgtatacctgttgcggcctcatgattttattgtcagggtcatcaagtgactc 422 | ||| |||||||||||||| ||||| || || ||| ||||||| ||||| |||||||| Sbjct: 1525 gaagccggtgtatacctgttggggccttataatcttagtgtcaggatcatcgagtgactc 1466 Query: 423 cttccaatgtgctaaccagccagccatccgaggaatcgcaaataacacggggaaaatttc 482 |||||||| |||| ||||||| |||| |||||||| ||||| | ||| || |||| ||| Sbjct: 1465 tttccaatgcgctagccagccacccatgcgaggaatagcaaacagcacaggaaaaaattc 1406 Query: 483 tgtagggaatcccattgctctata 506 |||||||||||||||||| ||||| Sbjct: 1405 tgtagggaatcccattgccctata 1382
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 105 bits (53), Expect = 1e-19 Identities = 107/125 (85%) Strand = Plus / Minus Query: 376 acctgttgcggcctcatgattttattgtcagggtcatcaagtgactccttccaatgtgct 435 ||||| || |||||||| || ||| |||| || |||||||||||||| |||||||||||| Sbjct: 7495860 acctgctgaggcctcataatcttagtgtctggatcatcaagtgactctttccaatgtgct 7495801 Query: 436 aaccagccagccatccgaggaatcgcaaataacacggggaaaatttctgtagggaatccc 495 ||||| |||||||| |||||||| ||||| | || ||||| | ||||||||||||||| Sbjct: 7495800 aaccaaccagccatgcgaggaattgcaaacagaacagggaagaactctgtagggaatccc 7495741 Query: 496 attgc 500 ||||| Sbjct: 7495740 attgc 7495736 Score = 99.6 bits (50), Expect = 9e-18 Identities = 113/134 (84%) Strand = Plus / Minus Query: 247 tacagggaagaaccggcacggcgacgcctcgtggcgtttgatgtagcgatctgaccaagc 306 ||||||| |||||| ||||| |||||||| || ||||| || ||||| |||||||||||| Sbjct: 7496503 tacagggcagaacctgcacgccgacgccttgttgcgttagaggtagcaatctgaccaagc 7496444 Query: 307 tcctcgtcctggttagatgtcactcgttctctcacaggggtgtaatgtctcagccaaacg 366 | ||| ||||| | | || ||||||||||| ||||| |||||||| ||||||||||| Sbjct: 7496443 tgttcgccctggcttgctgggactcgttctctgacaggtgtgtaatgcctcagccaaaca 7496384 Query: 367 cccgtgtatacctg 380 || ||||||||||| Sbjct: 7496383 ccagtgtatacctg 7496370
>dbj|AP004070.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OJ1705_E12 Length = 191416 Score = 105 bits (53), Expect = 1e-19 Identities = 107/125 (85%) Strand = Plus / Minus Query: 376 acctgttgcggcctcatgattttattgtcagggtcatcaagtgactccttccaatgtgct 435 ||||| || |||||||| || ||| |||| || |||||||||||||| |||||||||||| Sbjct: 89566 acctgctgaggcctcataatcttagtgtctggatcatcaagtgactctttccaatgtgct 89507 Query: 436 aaccagccagccatccgaggaatcgcaaataacacggggaaaatttctgtagggaatccc 495 ||||| |||||||| |||||||| ||||| | || ||||| | ||||||||||||||| Sbjct: 89506 aaccaaccagccatgcgaggaattgcaaacagaacagggaagaactctgtagggaatccc 89447 Query: 496 attgc 500 ||||| Sbjct: 89446 attgc 89442 Score = 99.6 bits (50), Expect = 9e-18 Identities = 113/134 (84%) Strand = Plus / Minus Query: 247 tacagggaagaaccggcacggcgacgcctcgtggcgtttgatgtagcgatctgaccaagc 306 ||||||| |||||| ||||| |||||||| || ||||| || ||||| |||||||||||| Sbjct: 90209 tacagggcagaacctgcacgccgacgccttgttgcgttagaggtagcaatctgaccaagc 90150 Query: 307 tcctcgtcctggttagatgtcactcgttctctcacaggggtgtaatgtctcagccaaacg 366 | ||| ||||| | | || ||||||||||| ||||| |||||||| ||||||||||| Sbjct: 90149 tgttcgccctggcttgctgggactcgttctctgacaggtgtgtaatgcctcagccaaaca 90090 Query: 367 cccgtgtatacctg 380 || ||||||||||| Sbjct: 90089 ccagtgtatacctg 90076
>ref|NM_129840.2| Arabidopsis thaliana citrate (SI)-synthase/ transferase, transferring acyl groups, acyl groups converted into alkyl on transfer AT2G42790 mRNA, complete cds Length = 1864 Score = 99.6 bits (50), Expect = 9e-18 Identities = 113/134 (84%) Strand = Plus / Minus Query: 334 tctctcacaggggtgtaatgtctcagccaaacgcccgtgtatacctgttgcggcctcatg 393 |||||||| || |||||||| |||||||| ||||| ||||| |||||||| || |||||| Sbjct: 1491 tctctcactggtgtgtaatgcctcagccacacgcctgtgtacacctgttgtggtctcatg 1432 Query: 394 attttattgtcagggtcatcaagtgactccttccaatgtgctaaccagccagccatccga 453 || || ||||||| ||||| |||||||| |||||||||| || | |||||||| ||| Sbjct: 1431 atcttggtgtcaggatcatccagtgactctttccaatgtgacaagtatccagccatgcga 1372 Query: 454 ggaatcgcaaataa 467 |||||||| ||||| Sbjct: 1371 ggaatcgcgaataa 1358
>gb|AY124841.1| Arabidopsis thaliana At2g42790/F7D19.21 mRNA, complete cds Length = 1530 Score = 99.6 bits (50), Expect = 9e-18 Identities = 113/134 (84%) Strand = Plus / Minus Query: 334 tctctcacaggggtgtaatgtctcagccaaacgcccgtgtatacctgttgcggcctcatg 393 |||||||| || |||||||| |||||||| ||||| ||||| |||||||| || |||||| Sbjct: 1433 tctctcactggtgtgtaatgcctcagccacacgcctgtgtacacctgttgtggtctcatg 1374 Query: 394 attttattgtcagggtcatcaagtgactccttccaatgtgctaaccagccagccatccga 453 || || ||||||| ||||| |||||||| |||||||||| || | |||||||| ||| Sbjct: 1373 atcttggtgtcaggatcatccagtgactctttccaatgtgacaagtatccagccatgcga 1314 Query: 454 ggaatcgcaaataa 467 |||||||| ||||| Sbjct: 1313 ggaatcgcgaataa 1300
>dbj|AK221264.1| Arabidopsis thaliana mRNA for putative citrate synthase, partial cds, clone: RAFL24-12-L08 Length = 716 Score = 99.6 bits (50), Expect = 9e-18 Identities = 113/134 (84%) Strand = Plus / Minus Query: 334 tctctcacaggggtgtaatgtctcagccaaacgcccgtgtatacctgttgcggcctcatg 393 |||||||| || |||||||| |||||||| ||||| ||||| |||||||| || |||||| Sbjct: 331 tctctcactggtgtgtaatgcctcagccacacgcctgtgtacacctgttgtggtctcatg 272 Query: 394 attttattgtcagggtcatcaagtgactccttccaatgtgctaaccagccagccatccga 453 || || ||||||| ||||| |||||||| |||||||||| || | |||||||| ||| Sbjct: 271 atcttggtgtcaggatcatccagtgactctttccaatgtgacaagtatccagccatgcga 212 Query: 454 ggaatcgcaaataa 467 |||||||| ||||| Sbjct: 211 ggaatcgcgaataa 198
>gb|AY048214.1| Arabidopsis thaliana At2g42790/F7D19.21 mRNA, complete cds Length = 1823 Score = 99.6 bits (50), Expect = 9e-18 Identities = 113/134 (84%) Strand = Plus / Minus Query: 334 tctctcacaggggtgtaatgtctcagccaaacgcccgtgtatacctgttgcggcctcatg 393 |||||||| || |||||||| |||||||| ||||| ||||| |||||||| || |||||| Sbjct: 1491 tctctcactggtgtgtaatgcctcagccacacgcctgtgtacacctgttgtggtctcatg 1432 Query: 394 attttattgtcagggtcatcaagtgactccttccaatgtgctaaccagccagccatccga 453 || || ||||||| ||||| |||||||| |||||||||| || | |||||||| ||| Sbjct: 1431 atcttggtgtcaggatcatccagtgactctttccaatgtgacaagtatccagccatgcga 1372 Query: 454 ggaatcgcaaataa 467 |||||||| ||||| Sbjct: 1371 ggaatcgcgaataa 1358
>gb|AY089021.1| Arabidopsis thaliana clone 17416 mRNA, complete sequence Length = 1846 Score = 99.6 bits (50), Expect = 9e-18 Identities = 113/134 (84%) Strand = Plus / Minus Query: 334 tctctcacaggggtgtaatgtctcagccaaacgcccgtgtatacctgttgcggcctcatg 393 |||||||| || |||||||| |||||||| ||||| ||||| |||||||| || |||||| Sbjct: 1490 tctctcactggtgtgtaatgcctcagccacacgcctgtgtacacctgttgtggtctcatg 1431 Query: 394 attttattgtcagggtcatcaagtgactccttccaatgtgctaaccagccagccatccga 453 || || ||||||| ||||| |||||||| |||||||||| || | |||||||| ||| Sbjct: 1430 atcttggtgtcaggatcatccagtgactctttccaatgtgacaagtatccagccatgcga 1371 Query: 454 ggaatcgcaaataa 467 |||||||| ||||| Sbjct: 1370 ggaatcgcgaataa 1357
>emb|BX819211.1|CNS0A9XH Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTFB57ZG10 of Flowers and buds of strain col-0 of Arabidopsis thaliana (thale cress) Length = 1820 Score = 91.7 bits (46), Expect = 2e-15 Identities = 112/134 (83%) Strand = Plus / Minus Query: 334 tctctcacaggggtgtaatgtctcagccaaacgcccgtgtatacctgttgcggcctcatg 393 |||||||| || |||||||| |||||||| ||||| || || |||||||| || |||||| Sbjct: 1470 tctctcactggtgtgtaatgcctcagccacacgcctgtatacacctgttgtggtctcatg 1411 Query: 394 attttattgtcagggtcatcaagtgactccttccaatgtgctaaccagccagccatccga 453 || || ||||||| ||||| |||||||| |||||||||| || | |||||||| ||| Sbjct: 1410 atcttggtgtcaggatcatccagtgactctttccaatgtgacaagtatccagccatgcga 1351 Query: 454 ggaatcgcaaataa 467 |||||||| ||||| Sbjct: 1350 ggaatcgcgaataa 1337
>gb|AC006931.6| Arabidopsis thaliana chromosome 2 clone F7D19 map m551, complete sequence Length = 115310 Score = 69.9 bits (35), Expect = 8e-09 Identities = 80/95 (84%) Strand = Plus / Minus Query: 373 tatacctgttgcggcctcatgattttattgtcagggtcatcaagtgactccttccaatgt 432 ||||||||||| || |||||||| || ||||||| ||||| |||||||| ||||||||| Sbjct: 78383 tatacctgttgtggtctcatgatcttggtgtcaggatcatccagtgactctttccaatgt 78324 Query: 433 gctaaccagccagccatccgaggaatcgcaaataa 467 | || | |||||||| ||||||||||| ||||| Sbjct: 78323 gacaagtatccagccatgcgaggaatcgcgaataa 78289
>gb|AC166174.2| Mus musculus BAC clone RP23-41B11 from chromosome 12, complete sequence Length = 233084 Score = 44.1 bits (22), Expect = 0.44 Identities = 22/22 (100%) Strand = Plus / Minus Query: 9 aaattgcaagtgtgtgcattca 30 |||||||||||||||||||||| Sbjct: 47588 aaattgcaagtgtgtgcattca 47567
>gb|AC099308.2| Drosophila melanogaster clone BACR11M14, complete sequence Length = 173097 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 432 tgctaaccagccagccatcc 451 |||||||||||||||||||| Sbjct: 126521 tgctaaccagccagccatcc 126540
>gb|AC022479.3|AC022479 Homo sapiens BAC clone RP11-217F11 from 3, complete sequence Length = 156535 Score = 40.1 bits (20), Expect = 6.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 183 ggcagcttggtttattgtgtgggc 206 |||||||||||||| ||||||||| Sbjct: 102738 ggcagcttggtttagtgtgtgggc 102761
>gb|AC092988.6| Homo sapiens 3 BAC RP11-217F11 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 156528 Score = 40.1 bits (20), Expect = 6.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 183 ggcagcttggtttattgtgtgggc 206 |||||||||||||| ||||||||| Sbjct: 102737 ggcagcttggtttagtgtgtgggc 102760
>emb|CR626877.10| Zebrafish DNA sequence from clone DKEYP-114F9 in linkage group 19, complete sequence Length = 173824 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 68 ctaaaactttacatgacagc 87 |||||||||||||||||||| Sbjct: 27899 ctaaaactttacatgacagc 27918
>gb|AE003570.4| Drosophila melanogaster chromosome X, section 69 of 74 of the complete sequence Length = 300051 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 432 tgctaaccagccagccatcc 451 |||||||||||||||||||| Sbjct: 286174 tgctaaccagccagccatcc 286155 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 3,860,429 Number of Sequences: 3902068 Number of extensions: 3860429 Number of successful extensions: 63982 Number of sequences better than 10.0: 19 Number of HSP's better than 10.0 without gapping: 13 Number of HSP's successfully gapped in prelim test: 6 Number of HSP's that attempted gapping in prelim test: 63933 Number of HSP's gapped (non-prelim): 44 length of query: 509 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 487 effective length of database: 17,147,199,772 effective search space: 8350686288964 effective search space used: 8350686288964 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
