ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbart22h09
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1NU4M_ACACA (Q37375) NADH-ubiquinone oxidoreductase chain 4 (EC 1... 30 2.0
2O52E2_HUMAN (Q8NGJ4) Olfactory receptor 52E2 29 2.6
3RT03_ACACA (P46754) Mitochondrial ribosomal protein S3 29 3.4
4NOS2_CAVPO (O54705) Nitric oxide synthase, inducible (EC 1.14.13... 28 5.8
5GPMA_THEFY (Q47KS8) 2,3-bisphosphoglycerate-dependent phosphogly... 28 5.8
6O51G1_HUMAN (Q8NGK1) Olfactory receptor 51G1 28 5.8
7O52E4_HUMAN (Q8NGH9) Olfactory receptor 52E4 28 7.6
8SGO2_SCHPO (O13734) Shugoshin-2 28 7.6
9NFIP1_BRARE (Q6DGP4) NEDD4 family-interacting protein 1 27 10.0
10MDLB_BUCAP (Q8K984) Multidrug resistance-like ATP-binding protei... 27 10.0

>NU4M_ACACA (Q37375) NADH-ubiquinone oxidoreductase chain 4 (EC 1.6.5.3) (NADH|
           dehydrogenase subunit 4)
          Length = 497

 Score = 29.6 bits (65), Expect = 2.0
 Identities = 11/35 (31%), Positives = 23/35 (65%)
 Frame = -2

Query: 141 VLCHFLLFFPSYSTLHYHLGFMYCFVYLLVYLRGS 37
           ++ ++ L F  +S   + +GF++CF+ +L  L+GS
Sbjct: 446 LVVNYYLRFSDFSKKEFVVGFIFCFITILFGLKGS 480



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>O52E2_HUMAN (Q8NGJ4) Olfactory receptor 52E2|
          Length = 325

 Score = 29.3 bits (64), Expect = 2.6
 Identities = 13/34 (38%), Positives = 20/34 (58%)
 Frame = -2

Query: 126 LLFFPSYSTLHYHLGFMYCFVYLLVYLRGSGDYT 25
           LL  P   TLH  +GF +C VY++  +   G++T
Sbjct: 16  LLGIPGLETLHIWIGFPFCAVYMIALI---GNFT 46



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>RT03_ACACA (P46754) Mitochondrial ribosomal protein S3|
          Length = 298

 Score = 28.9 bits (63), Expect = 3.4
 Identities = 18/61 (29%), Positives = 32/61 (52%), Gaps = 1/61 (1%)
 Frame = -3

Query: 203 FGRLITLVNLFPVLCVMRDV*CSAISYFFFLRIPRYITTW-VLCTALFIC*FICEGREII 27
           F R   L  +F +     +V  + IS FFF+R+ +Y T W VL    F+   + + R+++
Sbjct: 169 FSRSSFLSKIFIIGLSKMNVNANIISEFFFIRLTQYYTIWEVLRNINFLFKSLMKKRKLV 228

Query: 26  R 24
           +
Sbjct: 229 K 229



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>NOS2_CAVPO (O54705) Nitric oxide synthase, inducible (EC 1.14.13.39) (NOS type|
           II) (Inducible NO synthase) (Inducible NOS) (iNOS)
          Length = 1149

 Score = 28.1 bits (61), Expect = 5.8
 Identities = 17/47 (36%), Positives = 22/47 (46%)
 Frame = +3

Query: 24  SYNLPTLANKLTNKQSST*NPSGNVTWNTKEKKVGNGRALHVTHHTQ 164
           S +L   A K+   QS    PS   + + K K  GNG  L  T HT+
Sbjct: 56  SQSLTGTAKKVPESQSKPHKPSPTCSQHMKIKNWGNGMILQDTLHTK 102



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>GPMA_THEFY (Q47KS8) 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase|
           (EC 5.4.2.1) (Phosphoglyceromutase) (PGAM)
           (BPG-dependent PGAM) (dPGM)
          Length = 247

 Score = 28.1 bits (61), Expect = 5.8
 Identities = 12/27 (44%), Positives = 16/27 (59%)
 Frame = +2

Query: 191 LNDQINQAPAGGTYVDLESVQEALEPV 271
           LND       GG Y+D E+ +EA+E V
Sbjct: 216 LNDDFTPRKTGGEYLDPEAAKEAIEAV 242



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>O51G1_HUMAN (Q8NGK1) Olfactory receptor 51G1|
          Length = 321

 Score = 28.1 bits (61), Expect = 5.8
 Identities = 15/41 (36%), Positives = 21/41 (51%)
 Frame = -2

Query: 129 FLLFFPSYSTLHYHLGFMYCFVYLLVYLRGSGDYTSSNVMC 7
           FL  F     LH  +   +CF+YL V L   G+ T  +V+C
Sbjct: 15  FLTGFQGLEGLHGWISIPFCFIYLTVIL---GNLTILHVIC 52



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>O52E4_HUMAN (Q8NGH9) Olfactory receptor 52E4|
          Length = 312

 Score = 27.7 bits (60), Expect = 7.6
 Identities = 11/24 (45%), Positives = 14/24 (58%)
 Frame = -2

Query: 126 LLFFPSYSTLHYHLGFMYCFVYLL 55
           LL  P   TLH  + F +C VYL+
Sbjct: 16  LLGIPGLDTLHIWISFPFCIVYLI 39



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>SGO2_SCHPO (O13734) Shugoshin-2|
          Length = 647

 Score = 27.7 bits (60), Expect = 7.6
 Identities = 23/93 (24%), Positives = 36/93 (38%), Gaps = 9/93 (9%)
 Frame = +3

Query: 9   TSHCCSYNLPTLANKLTNKQSST*NPSGNVTWNTKEKKVGNGRALHVTHHTQYREQINQS 188
           T+   SYN   L + +TN +S   N     T + +E KV   R   +   ++    +N+ 
Sbjct: 506 TNDTGSYNNLELLSSVTNLKSPNENDRVTKTQSRRETKVKRRRKARIQETSEESTVVNEP 565

Query: 189 N*TTKSTRRR---------PAVRTSI*NRFRRP 260
           N       RR         P +RT +   F  P
Sbjct: 566 NEKPDGRSRRERKKVNYALPGLRTKLRRNFDLP 598



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>NFIP1_BRARE (Q6DGP4) NEDD4 family-interacting protein 1|
          Length = 210

 Score = 27.3 bits (59), Expect = 10.0
 Identities = 13/48 (27%), Positives = 24/48 (50%)
 Frame = -2

Query: 144 VVLCHFLLFFPSYSTLHYHLGFMYCFVYLLVYLRGSGDYTSSNVMCFS 1
           +++  F  +FP Y    Y L +++  +  L++LRG  +Y     M  S
Sbjct: 150 ILIVRFSTYFPGYFDGQYWLWWVFLVLGFLLFLRGFINYAKIRKMADS 197



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>MDLB_BUCAP (Q8K984) Multidrug resistance-like ATP-binding protein mdlB (EC|
           3.6.3.44)
          Length = 580

 Score = 27.3 bits (59), Expect = 10.0
 Identities = 11/30 (36%), Positives = 17/30 (56%)
 Frame = -2

Query: 144 VVLCHFLLFFPSYSTLHYHLGFMYCFVYLL 55
           +VLC F+  F  +S   Y +G +Y F+  L
Sbjct: 262 LVLCSFMFLFSYFSIGVYEVGVLYAFITYL 291


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 42,044,286
Number of Sequences: 219361
Number of extensions: 791183
Number of successful extensions: 1674
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1643
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1674
length of database: 80,573,946
effective HSP length: 79
effective length of database: 63,244,427
effective search space used: 1517866248
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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