>PEBA_SYNPX (Q7U4P7) 15,16-dihydrobiliverdin:ferredoxin oxidoreductase (EC|
           1.3.7.2)
          Length = 235

 Score = 31.2 bits (69), Expect = 0.73
 Identities = 20/76 (26%), Positives = 30/76 (39%)
 Frame = -2

Query: 248 DALEKIRERLPKVRS*KRCGALMCPIYKSIWLVICQGDALVADKLVPKRKVVGFLLYPVR 69
           D L+ +  R P +   +   +     Y S WL+ C+G +  AD+ +PK            
Sbjct: 115 DGLKDLNARFPDLNGEETMRSFDPNQYFSSWLLFCRGGSEEADRSLPK------------ 162

Query: 68  IPVRDVFCLFLYIYWG 21
                 F  FL  YWG
Sbjct: 163 -----AFSAFLKAYWG 173

>CLN8_CANFA (Q5JZQ7) Protein CLN8|
          Length = 288

 Score = 29.3 bits (64), Expect = 2.8
 Identities = 12/23 (52%), Positives = 15/23 (65%), Gaps = 3/23 (13%)
 Frame = +3

Query: 171 YWTHERTTSLLRP---HFGQPLP 230
           YWTH++T  LL P   +F QP P
Sbjct: 248 YWTHKKTQQLLNPVDWNFAQPAP 270

>PRKDC_XENLA (Q9DEI1) DNA-dependent protein kinase catalytic subunit (EC|
           2.7.11.1) (DNA-PK catalytic subunit) (DNA-PKcs)
          Length = 4146

 Score = 28.9 bits (63), Expect = 3.6
 Identities = 12/33 (36%), Positives = 19/33 (57%)
 Frame = +3

Query: 138 PLADYQPNGLIYWTHERTTSLLRPHFGQPLPYL 236
           PLAD   N L YW+    + +L+P++   +P L
Sbjct: 785 PLADVGLNALQYWSTNIPSDILKPYYKDIIPLL 817

>VGNM_SQMVM (P36341) Genome polyprotein M (RNA2 polyprotein) [Contains:|
           Movement protein (MP); Large coat protein (LCP) (Coat
           protein VP37); Small coat protein (SCP) (Coat protein
           VP23)] (Fragment)
          Length = 803

 Score = 28.9 bits (63), Expect = 3.6
 Identities = 16/59 (27%), Positives = 23/59 (38%), Gaps = 5/59 (8%)
 Frame = +2

Query: 80  TTEIQQLYVWEPVCQRQAR---PPGRLPTKWTYIL--DT*AHHISSTTSLWAASPLSFL 241
           TT  Q   VW P C++       P      W ++    T AH      + W  +PL+ L
Sbjct: 351 TTSSQNAIVWNPACEKAVELTFNPNPCGDAWNFVFLQQTKAHFAVQCVTGWTTTPLTDL 409

>13S1_FAGES (O23878) 13S globulin seed storage protein 1 precursor|
           (Legumin-like protein 1) [Contains: 13S globulin seed
           storage protein 1 acidic chain; 13S globulin seed
           storage protein 1 basic chain]
          Length = 565

 Score = 28.5 bits (62), Expect = 4.8
 Identities = 15/51 (29%), Positives = 25/51 (49%), Gaps = 2/51 (3%)
 Frame = +3

Query: 36  EKQTKYISHGDPYRVQQKSNNFTFGNQFVSDKRVPLADY--QPNGLIYWTH 182
           + +++  S GD    Q +S  F+ G+Q     R+   D    P G++ WTH
Sbjct: 188 QSESEEFSRGDQRTRQSESEEFSRGDQHQKIFRIRDGDVIPSPAGVVQWTH 238

>RPOB_BACFR (Q64NJ7) DNA-directed RNA polymerase beta chain (EC 2.7.7.6) (RNAP|
           beta subunit) (Transcriptase beta chain) (RNA polymerase
           beta subunit)
          Length = 1270

 Score = 28.1 bits (61), Expect = 6.2
 Identities = 21/91 (23%), Positives = 37/91 (40%), Gaps = 16/91 (17%)
 Frame = +3

Query: 12  LDSPPVDIEKQTKYISHGDPYRVQQKSNNFT--FGNQFVSDKRVPLADYQPNGLIYWT-- 179
           LD+PP   +K+  Y    + + +    NNF   F + ++   R  + D    GL Y    
Sbjct: 38  LDTPPEKRKKEGLYKVFAENFPIADTRNNFVLEFLDYYIDPPRYTIDDCIERGLTYSVPL 97

Query: 180 ------------HERTTSLLRPHFGQPLPYL 236
                       HE   ++++  F  P+PY+
Sbjct: 98  KAKLKLYCTDPDHEDFDTVIQDVFLGPIPYM 128

>RPOB_BACFN (Q5L897) DNA-directed RNA polymerase beta chain (EC 2.7.7.6) (RNAP|
           beta subunit) (Transcriptase beta chain) (RNA polymerase
           beta subunit)
          Length = 1270

 Score = 28.1 bits (61), Expect = 6.2
 Identities = 21/91 (23%), Positives = 37/91 (40%), Gaps = 16/91 (17%)
 Frame = +3

Query: 12  LDSPPVDIEKQTKYISHGDPYRVQQKSNNFT--FGNQFVSDKRVPLADYQPNGLIYWT-- 179
           LD+PP   +K+  Y    + + +    NNF   F + ++   R  + D    GL Y    
Sbjct: 38  LDTPPEKRKKEGLYKVFAENFPIADTRNNFVLEFLDYYIDPPRYTIDDCIERGLTYSVPL 97

Query: 180 ------------HERTTSLLRPHFGQPLPYL 236
                       HE   ++++  F  P+PY+
Sbjct: 98  KAKLKLYCTDPDHEDFDTVIQDVFLGPIPYM 128

>PEBA_SYNPY (Q02189) 15,16-dihydrobiliverdin:ferredoxin oxidoreductase (EC|
           1.3.7.2)
          Length = 236

 Score = 28.1 bits (61), Expect = 6.2
 Identities = 19/73 (26%), Positives = 29/73 (39%)
 Frame = -2

Query: 242 LEKIRERLPKVRS*KRCGALMCPIYKSIWLVICQGDALVADKLVPKRKVVGFLLYPVRIP 63
           L+++ +R P +   +   +     Y S WL+ C+G A  AD  +PK              
Sbjct: 117 LKELNQRFPDLNGEETMRSFDPNQYFSSWLLFCRGGAEQADLSLPK-------------- 162

Query: 62  VRDVFCLFLYIYW 24
               F  FL  YW
Sbjct: 163 ---AFSAFLKAYW 172


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 44,020,779
Number of Sequences: 219361
Number of extensions: 883081
Number of successful extensions: 2357
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 2339
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2357
length of database: 80,573,946
effective HSP length: 61
effective length of database: 67,192,925
effective search space used: 1612630200
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)