>gb|AC134409.12| Mus musculus chromosome 5, clone RP24-355F10, complete sequence
          Length = 141528

 Score = 40.1 bits (20), Expect = 3.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 28    tagatatagagaaacaaaca 47
             ||||||||||||||||||||
Sbjct: 60807 tagatatagagaaacaaaca 60788

>gb|AY607842.1| Homo sapiens DNA cross-link repair 1A (PSO2 homolog, S. cerevisiae)
            (DCLRE1A) gene, complete cds
          Length = 23104

 Score = 40.1 bits (20), Expect = 3.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 219  cagcctctcccttatctttt 238
            ||||||||||||||||||||
Sbjct: 2104 cagcctctcccttatctttt 2085

>gb|CP000117.1| Anabaena variabilis ATCC 29413 chromosome, complete sequence
          Length = 6365727

 Score = 40.1 bits (20), Expect = 3.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                       
Query: 27      gtagatatagagaaacaaacaaaa 50
               |||| |||||||||||||||||||
Sbjct: 1987637 gtagttatagagaaacaaacaaaa 1987660

>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score = 40.1 bits (20), Expect = 3.3
 Identities = 35/40 (87%)
 Strand = Plus / Minus

                                                      
Query: 196    ctcttctacgacctcactttgggcagcctctcccttatct 235
              ||||| || |||||||||||||  ||||| ||||||||||
Sbjct: 477720 ctcttttatgacctcactttggcgagcctttcccttatct 477681

>gb|AC183290.2| Pan troglodytes BAC clone CH251-733G21 from chromosome 11, complete
             sequence
          Length = 166718

 Score = 40.1 bits (20), Expect = 3.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 39    aaacaaacaaaatacatctc 58
             ||||||||||||||||||||
Sbjct: 32696 aaacaaacaaaatacatctc 32715

>emb|AL163280.2|HS21C080 Homo sapiens chromosome 21 segment HS21C080
          Length = 340000

 Score = 40.1 bits (20), Expect = 3.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 37     agaaacaaacaaaatacatc 56
              ||||||||||||||||||||
Sbjct: 122600 agaaacaaacaaaatacatc 122581

>emb|AL592546.7| Human DNA sequence from clone RP11-211N11 on chromosome 10 Contains the
             3' end of the CASP7 gene for caspase 7 apoptosis-related
             cysteine protease, a novel gene (FLJ23537), the DCLRE1A
             gene for DNA cross-link repair 1A (PSO2 homolog S.
             cerevisiae), the 5' end of the gene for a novel NHL repeat
             domain containing protein (FLJ33312), a novel gene and a
             CpG island, complete sequence
          Length = 174776

 Score = 40.1 bits (20), Expect = 3.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 219   cagcctctcccttatctttt 238
             ||||||||||||||||||||
Sbjct: 20587 cagcctctcccttatctttt 20568

>emb|AL390882.12| Human DNA sequence from clone RP11-113D19 on chromosome 9p21.2-22.3
             Contains the IFNA21 gene for interferon, alpha 21, the
             IFNW1 gene for interferon, omega 1, an interferon, omega 1
             (IFNW1) pseudogene, the IFNB1 gene for interferon, beta 1,
             fibroblast, an interferon, beta 1, fibroblast (IFNB1)
             pseudogene and a novel gene, possible otholog of mouse
             RIKEN cDNA 4933428I03 gene, complete sequence
          Length = 162064

 Score = 40.1 bits (20), Expect = 3.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 31    atatagagaaacaaacaaaa 50
             ||||||||||||||||||||
Sbjct: 58769 atatagagaaacaaacaaaa 58788

>emb|AL049569.13|HSDJ37C10 Human DNA sequence from clone RP1-37C10 on chromosome 1p35.2-35.21
             Contains the 3' end of the CROCC gene for ciliary rootlet
             coiled-coil rootletin (KIAA0445), the MFAP2 gene for
             microfibrillar-associated protein 2, a novel gene, the
             gene for a novel protein, the SDHB gene for succinate
             dehydrogenase complex subunit B iron sulfur (Ip), the
             PADI2 gene for type II peptidyl arginine deiminase,
             complete sequence
          Length = 216497

 Score = 40.1 bits (20), Expect = 3.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 28    tagatatagagaaacaaaca 47
             ||||||||||||||||||||
Sbjct: 14047 tagatatagagaaacaaaca 14066

>gb|AC158926.4| Mus musculus chromosome 3, clone RP24-93J4, complete sequence
          Length = 185247

 Score = 40.1 bits (20), Expect = 3.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 35   agagaaacaaacaaaataca 54
            ||||||||||||||||||||
Sbjct: 8219 agagaaacaaacaaaataca 8200

>emb|BX538350.1| Cryptosporidium parvum chromosome 6, complete sequence; segment 1/4
          Length = 287050

 Score = 40.1 bits (20), Expect = 3.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 33    atagagaaacaaacaaaata 52
             ||||||||||||||||||||
Sbjct: 38304 atagagaaacaaacaaaata 38323

>emb|CR937025.1|PT027O15 Pan troglodytes chromosome 11 BAC PTB-027O15, complete sequence
          Length = 155399

 Score = 40.1 bits (20), Expect = 3.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 31    atatagagaaacaaacaaaa 50
             ||||||||||||||||||||
Sbjct: 72799 atatagagaaacaaacaaaa 72780

>emb|AL954244.1| Pan troglodytes chromosome 22 clone PTB-060F03 map 22q22.3, complete
             sequence
          Length = 151449

 Score = 40.1 bits (20), Expect = 3.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 130   agcgcgtccccctggcagat 149
             ||||||||||||||||||||
Sbjct: 82154 agcgcgtccccctggcagat 82135

>emb|AL954243.1| Pan troglodytes chromosome 22 clone PTB-111H18 map 22q22.3, complete
              sequence
          Length = 216379

 Score = 40.1 bits (20), Expect = 3.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 130    agcgcgtccccctggcagat 149
              ||||||||||||||||||||
Sbjct: 101239 agcgcgtccccctggcagat 101220

>gb|AC015689.12| Homo sapiens chromosome 11, clone RP11-23F23, complete sequence
          Length = 182522

 Score = 40.1 bits (20), Expect = 3.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 39    aaacaaacaaaatacatctc 58
             ||||||||||||||||||||
Sbjct: 57101 aaacaaacaaaatacatctc 57082

>dbj|D42045.1|HUMKIAAI Homo sapiens KIAA0086 mRNA, partial cds
          Length = 4468

 Score = 40.1 bits (20), Expect = 3.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 219 cagcctctcccttatctttt 238
           ||||||||||||||||||||
Sbjct: 105 cagcctctcccttatctttt 86

>gb|AF064860.2| Homo sapiens chromosome 21 clone PAC 70I24 map 21q22.3, complete
             sequence
          Length = 170121

 Score = 40.1 bits (20), Expect = 3.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 37    agaaacaaacaaaatacatc 56
             ||||||||||||||||||||
Sbjct: 49192 agaaacaaacaaaatacatc 49173

>gb|AF391285.1|AF391285 Homo sapiens 11p15.5 clone LOH11A, partial sequence
          Length = 160199

 Score = 40.1 bits (20), Expect = 3.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 39    aaacaaacaaaatacatctc 58
             ||||||||||||||||||||
Sbjct: 67576 aaacaaacaaaatacatctc 67557

>gb|AC101979.13| Mus musculus chromosome 3, clone RP24-338A7, complete sequence
          Length = 161025

 Score = 40.1 bits (20), Expect = 3.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 35    agagaaacaaacaaaataca 54
             ||||||||||||||||||||
Sbjct: 53877 agagaaacaaacaaaataca 53858

>ref|XM_625356.1| Cryptosporidium parvum Iowa II hypothetical protein (cgd6_160),
            partial mRNA
          Length = 2073

 Score = 40.1 bits (20), Expect = 3.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 33   atagagaaacaaacaaaata 52
            ||||||||||||||||||||
Sbjct: 1384 atagagaaacaaacaaaata 1403

>emb|AJ549502.2|HSA549502 Homo sapiens peptidylarginine deiminase gene locus (PADI12346 genes)
          Length = 355060

 Score = 40.1 bits (20), Expect = 3.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 28    tagatatagagaaacaaaca 47
             ||||||||||||||||||||
Sbjct: 89494 tagatatagagaaacaaaca 89475

>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3,
              complete sequence
          Length = 36192742

 Score = 40.1 bits (20), Expect = 3.3
 Identities = 35/40 (87%)
 Strand = Plus / Minus

                                                      
Query: 196    ctcttctacgacctcactttgggcagcctctcccttatct 235
              ||||| || |||||||||||||  ||||| ||||||||||
Sbjct: 477718 ctcttttatgacctcactttggcgagcctttcccttatct 477679

>gb|AC091656.3| Rattus norvegicus strain Brown Norway clone RP31-236J24, complete
             sequence
          Length = 132420

 Score = 40.1 bits (20), Expect = 3.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 219   cagcctctcccttatctttt 238
             ||||||||||||||||||||
Sbjct: 84146 cagcctctcccttatctttt 84127

>dbj|BA000001.2| Pyrococcus horikoshii OT3 DNA, complete genome
          Length = 1738505

 Score = 40.1 bits (20), Expect = 3.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 228    ccttatcttttctagggcatcctc 251
              |||||||||||||||||| |||||
Sbjct: 712722 ccttatcttttctagggcttcctc 712745

>emb|AL954227.3|RP43002I19 Pan troglodytes chromosome 22 BAC RP43-002I19, complete sequence
          Length = 192219

 Score = 40.1 bits (20), Expect = 3.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 37    agaaacaaacaaaatacatc 56
             ||||||||||||||||||||
Sbjct: 45688 agaaacaaacaaaatacatc 45669

>emb|AL954226.2|PTB126M21 Pan troglodytes chromosome 22 BAC PTB-126M21, complete sequence
          Length = 188320

 Score = 40.1 bits (20), Expect = 3.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 37     agaaacaaacaaaatacatc 56
              ||||||||||||||||||||
Sbjct: 167734 agaaacaaacaaaatacatc 167715

>dbj|AP001752.1| Homo sapiens genomic DNA, chromosome 21q, section 96/105
          Length = 340000

 Score = 40.1 bits (20), Expect = 3.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 130    agcgcgtccccctggcagat 149
              ||||||||||||||||||||
Sbjct: 260485 agcgcgtccccctggcagat 260466

>gb|DQ152146.1| Megacephala wimmeri isolate Pwim-coxIII/14 cytochrome oxidase
           subunit III (CoxIII) gene, partial cds; mitochondrial
          Length = 422

 Score = 40.1 bits (20), Expect = 3.3
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                       
Query: 29  agatatagagaaacaaacaaaatacatc 56
           |||||||||||||||| |||| ||||||
Sbjct: 413 agatatagagaaacaatcaaactacatc 386

>gb|DQ152141.1| Megacephala klugi isolate Pklu-coxIII/9 cytochrome oxidase subunit
           III (CoxIII) gene, partial cds; mitochondrial
          Length = 422

 Score = 40.1 bits (20), Expect = 3.3
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                       
Query: 29  agatatagagaaacaaacaaaatacatc 56
           |||||||||||||||| |||| ||||||
Sbjct: 413 agatatagagaaacaatcaaactacatc 386

>gb|AC137947.12| Mus musculus chromosome 5, clone RP23-362I3, complete sequence
          Length = 214295

 Score = 40.1 bits (20), Expect = 3.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 28     tagatatagagaaacaaaca 47
              ||||||||||||||||||||
Sbjct: 197548 tagatatagagaaacaaaca 197529

>gb|AF045448.1|AF045448 Homo sapiens chromosome 21q22.3 PAC 191P10, complete sequence
          Length = 58473

 Score = 40.1 bits (20), Expect = 3.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 37    agaaacaaacaaaatacatc 56
             ||||||||||||||||||||
Sbjct: 16596 agaaacaaacaaaatacatc 16615

>emb|AL929067.8| Mouse DNA sequence from clone RP24-69A20 on chromosome 11, complete
             sequence
          Length = 87925

 Score = 40.1 bits (20), Expect = 3.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 31    atatagagaaacaaacaaaa 50
             ||||||||||||||||||||
Sbjct: 42842 atatagagaaacaaacaaaa 42823

>gb|AF121897.4| Homo sapiens chromosome 21 clone RP1-160L9 map 21q22.2, complete sequence
          Length = 132088

 Score = 40.1 bits (20), Expect = 3.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 37     agaaacaaacaaaatacatc 56
              ||||||||||||||||||||
Sbjct: 126841 agaaacaaacaaaatacatc 126822

>gb|AC113930.2| Oryza sativa (japonica cultivar-group) chromosome 3 clone OJ1384D03,
             complete sequence
          Length = 116214

 Score = 40.1 bits (20), Expect = 3.3
 Identities = 35/40 (87%)
 Strand = Plus / Minus

                                                     
Query: 196   ctcttctacgacctcactttgggcagcctctcccttatct 235
             ||||| || |||||||||||||  ||||| ||||||||||
Sbjct: 76180 ctcttttatgacctcactttggcgagcctttcccttatct 76141

>dbj|AP001053.1| Homo sapiens genomic DNA, chromosome 21, clone:KB836E9, MX1-D21S171
              region, complete sequence
          Length = 161920

 Score = 40.1 bits (20), Expect = 3.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 130    agcgcgtccccctggcagat 149
              ||||||||||||||||||||
Sbjct: 108712 agcgcgtccccctggcagat 108693


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,339,283
Number of Sequences: 3902068
Number of extensions: 3339283
Number of successful extensions: 59339
Number of sequences better than 10.0: 35
Number of HSP's better than 10.0 without gapping: 35
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 59230
Number of HSP's gapped (non-prelim): 109
length of query: 258
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 236
effective length of database: 17,147,199,772
effective search space: 4046739146192
effective search space used: 4046739146192
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)