ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbart22g07 |
|---|---|
| Clone Library Name | barley_pub |
>GPAA1_MOUSE (Q9WTK3) Glycosylphosphatidylinositol anchor attachment 1 protein| (GPI anchor attachment protein 1) (GAA1 protein homolog) (mGAA1) Length = 620 Score = 32.7 bits (73), Expect = 0.42 Identities = 24/80 (30%), Positives = 37/80 (46%), Gaps = 3/80 (3%) Frame = +1 Query: 130 LRVQSKNERINP--AGQAPAPGSPCTATR-PGAAALTTPASLRQDGHLPPVSYAVFTLHR 300 L +Q +NP AG+AP+PG+P T+ G A+LT P + Q L V H Sbjct: 391 LWMQLHQAGVNPEEAGKAPSPGTPLLPTQGVGLASLTAPLLISQAMGLALYFLPVLGQHL 450 Query: 301 DLARSPAAKKSSIPLLSIGV 360 P A+ ++ L + + Sbjct: 451 ATQHFPVAEAEAVVLTLLAI 470
>DBP10_CANAL (Q5ANB2) ATP-dependent RNA helicase DBP10 (EC 3.6.1.-)| Length = 908 Score = 32.0 bits (71), Expect = 0.71 Identities = 23/73 (31%), Positives = 33/73 (45%) Frame = +1 Query: 76 VDSHSTTEE*EEKRATSALRVQSKNERINPAGQAPAPGSPCTATRPGAAALTTPASLRQD 255 +DS S ++ +E+R R + K ER+ PA + P+P S LR Sbjct: 358 IDSDSEDDDDDEERKKGKKRYKFKKERLPPANRLPSPHSTIVFVPTKHHVEYVTKLLRDA 417 Query: 256 GHLPPVSYAVFTL 294 G+L VSY TL Sbjct: 418 GYL--VSYIYGTL 428
>CRBB1_RAT (P02523) Beta crystallin B1 [Contains: Beta crystallin B1B]| Length = 249 Score = 31.6 bits (70), Expect = 0.93 Identities = 16/53 (30%), Positives = 23/53 (43%), Gaps = 4/53 (7%) Frame = +1 Query: 157 INPAGQAPAPGSPCTATRPGAAALTTPASLRQD----GHLPPVSYAVFTLHRD 303 +NP G+P T T P PAS+ + G LPP SY + ++ Sbjct: 12 VNPGPDGKGKGTPSTGTAPAPGPTPVPASVPRPAAKVGELPPGSYRLVVFEQE 64
>FUTSC_DROME (Q9W596) Microtubule-associated protein futsch| Length = 5412 Score = 31.2 bits (69), Expect = 1.2 Identities = 14/38 (36%), Positives = 22/38 (57%) Frame = +1 Query: 115 RATSALRVQSKNERINPAGQAPAPGSPCTATRPGAAAL 228 +AT + + ++P+ +APAPGSP +P AA L Sbjct: 802 QATQRKPISRRPRGVSPSKRAPAPGSPVKQAKPKAADL 839
>MAFB_RAT (P54842) Transcription factor MafB (V-maf musculoaponeurotic| fibrosarcoma oncogene homolog B) (Transcription factor MAF1) Length = 323 Score = 31.2 bits (69), Expect = 1.2 Identities = 12/27 (44%), Positives = 16/27 (59%) Frame = +1 Query: 163 PAGQAPAPGSPCTATRPGAAALTTPAS 243 P G+A PG PCT +P + +TP S Sbjct: 35 PLGRAERPGRPCTRLQPAGSVSSTPLS 61
>MAFB_MOUSE (P54841) Transcription factor MafB (V-maf musculoaponeurotic| fibrosarcoma oncogene homolog B) (Transcription factor MAF1) (Segmentation protein KR) (Kreisler) Length = 323 Score = 31.2 bits (69), Expect = 1.2 Identities = 12/27 (44%), Positives = 16/27 (59%) Frame = +1 Query: 163 PAGQAPAPGSPCTATRPGAAALTTPAS 243 P G+A PG PCT +P + +TP S Sbjct: 35 PLGRAERPGRPCTRLQPAGSVSSTPLS 61
>MAFB_HUMAN (Q9Y5Q3) Transcription factor MafB (V-maf musculoaponeurotic| fibrosarcoma oncogene homolog B) Length = 323 Score = 31.2 bits (69), Expect = 1.2 Identities = 12/27 (44%), Positives = 16/27 (59%) Frame = +1 Query: 163 PAGQAPAPGSPCTATRPGAAALTTPAS 243 P G+A PG PCT +P + +TP S Sbjct: 35 PLGRAERPGRPCTRLQPAGSVSSTPLS 61
>GRASP_HUMAN (Q7Z6J2) General receptor for phosphoinositides 1-associated| scaffold protein (GRP1-associated scaffold protein) Length = 395 Score = 30.8 bits (68), Expect = 1.6 Identities = 18/52 (34%), Positives = 24/52 (46%) Frame = +1 Query: 106 EEKRATSALRVQSKNERINPAGQAPAPGSPCTATRPGAAALTTPASLRQDGH 261 EE AT ++ + + PA P PG P A PG A A+L +D H Sbjct: 13 EEAAATPDPAARTPDSEVAPAAPVPTPGPPAAAATPGPPADELYAAL-EDYH 63
>MUC5B_HUMAN (Q9HC84) Mucin-5B precursor (Mucin 5 subtype B, tracheobronchial)| (High molecular weight salivary mucin MG1) (Sublingual gland mucin) Length = 5703 Score = 30.4 bits (67), Expect = 2.1 Identities = 22/64 (34%), Positives = 28/64 (43%), Gaps = 5/64 (7%) Frame = +1 Query: 121 TSALRVQSKNERINPA---GQAPAPGS-PCTATRPGAAALT-TPASLRQDGHLPPVSYAV 285 T+A + + NP+ G P P TAT P A + T TP+S H PPV Sbjct: 3891 TTATTITATGSTTNPSSTPGTTPIPPELTTTATTPAATSSTVTPSSALGTTHTPPVPNTT 3950 Query: 286 FTLH 297 T H Sbjct: 3951 ATTH 3954 Score = 29.6 bits (65), Expect = 3.5 Identities = 22/64 (34%), Positives = 28/64 (43%), Gaps = 5/64 (7%) Frame = +1 Query: 121 TSALRVQSKNERINPA---GQAPAPGS-PCTATRPGAAALT-TPASLRQDGHLPPVSYAV 285 T+A + + NP+ G P P TAT P A + T TP+S H PPV Sbjct: 3362 TTATTITATGSTTNPSSTPGTTPIPPVLTTTATTPAATSSTVTPSSALGTTHTPPVPNTT 3421 Query: 286 FTLH 297 T H Sbjct: 3422 ATTH 3425 Score = 29.6 bits (65), Expect = 3.5 Identities = 22/64 (34%), Positives = 28/64 (43%), Gaps = 5/64 (7%) Frame = +1 Query: 121 TSALRVQSKNERINPA---GQAPAPGS-PCTATRPGAAALT-TPASLRQDGHLPPVSYAV 285 T+A + + NP+ G P P TAT P A + T TP+S H PPV Sbjct: 2135 TTATTITATGSTTNPSSTPGTTPIPPVLTTTATTPAATSSTVTPSSALGTTHTPPVPNTT 2194 Query: 286 FTLH 297 T H Sbjct: 2195 ATTH 2198 Score = 29.3 bits (64), Expect = 4.6 Identities = 22/64 (34%), Positives = 28/64 (43%), Gaps = 5/64 (7%) Frame = +1 Query: 121 TSALRVQSKNERINPA---GQAPAPGS-PCTATRPGAAALT-TPASLRQDGHLPPVSYAV 285 T+A + + NP+ G P P TAT P A + T TP+S H PPV Sbjct: 2664 TTATTITATGSTTNPSSTPGTRPIPPVLTTTATTPAATSSTVTPSSALGTTHTPPVPNTT 2723 Query: 286 FTLH 297 T H Sbjct: 2724 ATTH 2727
>SYP2L_HUMAN (Q9H987) Synaptopodin 2-like protein| Length = 977 Score = 30.0 bits (66), Expect = 2.7 Identities = 19/51 (37%), Positives = 28/51 (54%) Frame = +1 Query: 118 ATSALRVQSKNERINPAGQAPAPGSPCTATRPGAAALTTPASLRQDGHLPP 270 ATS+L + + + + P G AP P +P P AAA+T+ AS+ L P Sbjct: 546 ATSSLYIPAPSRPVTPGG-APEPPAP-----PSAAAMTSTASIFLSAPLRP 590
>RPGR1_HUMAN (Q96KN7) X-linked retinitis pigmentosa GTPase regulator-interacting| protein 1 (RPGR-interacting protein 1) Length = 1286 Score = 30.0 bits (66), Expect = 2.7 Identities = 19/64 (29%), Positives = 28/64 (43%) Frame = -2 Query: 373 HQTVRLRSTEAEWMTSSPRASERDRGAV*IQHRKREGGGRPV*EKPAW*GRRPRGVLLYM 194 HQ ++ + + P + R + V + HR+ G PV EKP R PR L Y Sbjct: 116 HQRPQMHRLQGHFHCVGPASPRRAQPRVQVGHRQLHTAGAPVPEKPK---RGPRDRLSYT 172 Query: 193 ESPA 182 P+ Sbjct: 173 APPS 176
>TCP1L_PANTR (Q68US1) T-complex protein 10A homolog 2 (T-complex protein 10A-2)| (TCP10A-2) (TCP10-like) Length = 217 Score = 29.6 bits (65), Expect = 3.5 Identities = 17/61 (27%), Positives = 25/61 (40%) Frame = +1 Query: 130 LRVQSKNERINPAGQAPAPGSPCTATRPGAAALTTPASLRQDGHLPPVSYAVFTLHRDLA 309 L + E +P P G+ T A LT + G +PP+ V LH++L Sbjct: 6 LEARDPKEGTHPEDPCPGAGAVTEKTAVAAEVLTEDCNA---GEMPPLQQQVIRLHQELG 62 Query: 310 R 312 R Sbjct: 63 R 63
>DUSC_NEIMA (Q9JUP6) tRNA-dihydrouridine synthase C (EC 1.-.-.-)| Length = 333 Score = 29.6 bits (65), Expect = 3.5 Identities = 22/91 (24%), Positives = 35/91 (38%), Gaps = 2/91 (2%) Frame = +1 Query: 154 RINPAGQAPAPGSPCTATRPGAAALTTPASLRQDGHLPPVSYAVFTLHRDLARSPAAKKS 333 R+ ++PA C GA LT A + +G+ PP + RD P Sbjct: 153 RLGYEDKSPALECACAIAEGGACGLTVHARTKAEGYEPPAHWEWIRKIRDSVDIPVTANG 212 Query: 334 SIPLLS--IGV*RSDGLSLLCA*NGAGMPPE 420 + L IG+ G + + GA + P+ Sbjct: 213 DVFSLQDYIGIKTISGCNSVMLGRGAVIRPD 243
>CRBB1_MOUSE (Q9WVJ5) Beta crystallin B1 [Contains: Beta crystallin B1B]| Length = 249 Score = 29.6 bits (65), Expect = 3.5 Identities = 16/58 (27%), Positives = 23/58 (39%), Gaps = 4/58 (6%) Frame = +1 Query: 142 SKNERINPAGQAPAPGSPCTATRPGAAALTTPASLRQD----GHLPPVSYAVFTLHRD 303 S +NP G+P T P PAS+ + G LPP SY + ++ Sbjct: 7 SATTAVNPGPDGKGKGAPSTGPAPAPGPTPVPASVPRPAAKVGDLPPGSYRLIVFEQE 64
>PXMP4_HUMAN (Q9Y6I8) Peroxisomal membrane protein 4 (24 kDa peroxisomal| intrinsic membrane protein) Length = 211 Score = 29.6 bits (65), Expect = 3.5 Identities = 15/42 (35%), Positives = 24/42 (57%) Frame = +3 Query: 3 SINSKIWLISTEEKEETELHMYLVGRFSFYY*GVRREESYIR 128 S+ K+W I + T +H + + RF F Y G+R +SYI+ Sbjct: 58 SLQEKLWAIL----QATYIHSWNLARFVFTYKGLRALQSYIQ 95
>IF2_BRUSU (Q8FXT2) Translation initiation factor IF-2| Length = 959 Score = 29.3 bits (64), Expect = 4.6 Identities = 13/39 (33%), Positives = 18/39 (46%) Frame = +3 Query: 153 KNQPSRPGPGAGLSMYSNTPRGRRPHHAGFSQTGRPPPS 269 + +RP P + P+G RP AG Q G P P+ Sbjct: 236 RRDDARPAPYGARPQQAGRPQGGRPQPAGRPQQGSPRPA 274
>IF2_BRUME (Q8YEB3) Translation initiation factor IF-2| Length = 959 Score = 29.3 bits (64), Expect = 4.6 Identities = 13/39 (33%), Positives = 18/39 (46%) Frame = +3 Query: 153 KNQPSRPGPGAGLSMYSNTPRGRRPHHAGFSQTGRPPPS 269 + +RP P + P+G RP AG Q G P P+ Sbjct: 236 RRDDARPAPYGARPQQAGRPQGGRPQPAGRPQQGSPRPA 274
>IF2_BRUAB (Q57AA0) Translation initiation factor IF-2| Length = 959 Score = 29.3 bits (64), Expect = 4.6 Identities = 13/39 (33%), Positives = 18/39 (46%) Frame = +3 Query: 153 KNQPSRPGPGAGLSMYSNTPRGRRPHHAGFSQTGRPPPS 269 + +RP P + P+G RP AG Q G P P+ Sbjct: 236 RRDDARPAPYGARPQQAGRPQGGRPQPAGRPQQGSPRPA 274
>IF2_BRUA2 (Q2YQR7) Translation initiation factor IF-2| Length = 959 Score = 29.3 bits (64), Expect = 4.6 Identities = 13/39 (33%), Positives = 18/39 (46%) Frame = +3 Query: 153 KNQPSRPGPGAGLSMYSNTPRGRRPHHAGFSQTGRPPPS 269 + +RP P + P+G RP AG Q G P P+ Sbjct: 236 RRDDARPAPYGARPQQAGRPQGGRPQPAGRPQQGSPRPA 274
>OPGH_RALSO (Q8XVC2) Glucans biosynthesis glucosyltransferase H (EC 2.4.1.-)| Length = 862 Score = 29.3 bits (64), Expect = 4.6 Identities = 28/84 (33%), Positives = 38/84 (45%), Gaps = 7/84 (8%) Frame = +1 Query: 109 EKRATSALRVQSKNERINPAGQAPAPGSPCTATRPGAAALTTPA----SLRQDGHLPPV- 273 E ATS L Q N A PA + + AL PA +LR++ + P Sbjct: 2 ELPATSGLNAQPGNAEGTTASTRPA--TALSVAERYLEALPLPAEARAALRREAGIEPAD 59 Query: 274 --SYAVFTLHRDLARSPAAKKSSI 339 + A+ LHR LAR AA+ +SI Sbjct: 60 KDAVALAKLHRALARLDAAQTASI 83
>CAC1C_RAT (P22002) Voltage-dependent L-type calcium channel alpha-1C subunit| (Voltage-gated calcium channel alpha subunit Cav1.2) (Calcium channel, L type, alpha-1 polypeptide, isoform 1, cardiac muscle) (RAT brain class C) (RBC) Length = 2169 Score = 29.3 bits (64), Expect = 4.6 Identities = 16/39 (41%), Positives = 20/39 (51%), Gaps = 5/39 (12%) Frame = +3 Query: 165 SRPGPGAGLSMYSNTPRGRRPHHAGFSQT-----GRPPP 266 S G A ++ +NT GR PH AG+S T G PP Sbjct: 1788 SSTGSNANINNANNTALGRFPHPAGYSSTVSTVEGHGPP 1826
>CAC1C_MOUSE (Q01815) Voltage-dependent L-type calcium channel alpha-1C subunit| (Voltage-gated calcium channel alpha subunit Cav1.2) (Calcium channel, L type, alpha-1 polypeptide, isoform 1, cardiac muscle) (Mouse brain class C) (MBC) (MELC-CC) Length = 2139 Score = 29.3 bits (64), Expect = 4.6 Identities = 16/39 (41%), Positives = 20/39 (51%), Gaps = 5/39 (12%) Frame = +3 Query: 165 SRPGPGAGLSMYSNTPRGRRPHHAGFSQT-----GRPPP 266 S G A ++ +NT GR PH AG+S T G PP Sbjct: 1759 SSTGSNANINNANNTALGRFPHPAGYSSTVSTVEGHGPP 1797
>TNR9_HUMAN (Q07011) Tumor necrosis factor receptor superfamily member 9| precursor (4-1BB ligand receptor) (T-cell antigen 4-1BB homolog) (T-cell antigen ILA) (CD137 antigen) Length = 255 Score = 29.3 bits (64), Expect = 4.6 Identities = 17/46 (36%), Positives = 23/46 (50%) Frame = +1 Query: 136 VQSKNERINPAGQAPAPGSPCTATRPGAAALTTPASLRQDGHLPPV 273 V ER G +PA SP GA+++T PA R+ GH P + Sbjct: 148 VNGTKERDVVCGPSPADLSP------GASSVTPPAPAREPGHSPQI 187
>TF3B_HUMAN (Q92994) Transcription factor IIIB 90 kDa subunit (TFIIIB90)| (hTFIIIB90) (B-related factor 1) (BRF-1) (hBRF) (TATA box-binding protein-associated factor, RNA polymerase III, subunit 2) (TAF3B2) Length = 677 Score = 29.3 bits (64), Expect = 4.6 Identities = 20/59 (33%), Positives = 26/59 (44%), Gaps = 5/59 (8%) Frame = -1 Query: 440 VRGSQPGSGGMP-----APF*AHSKDRPSDRQTPIDRSGMDDFFAAGERARSRCSVNTA 279 +RG GG P P + S + S R+TP RSG D + G+R R S A Sbjct: 543 LRGLSSAGGGSPHREDAQPEHSASARKLSRRRTPASRSGADPVTSVGKRLRPLVSTQPA 601
>TCP1L_HUMAN (Q8TDR4) T-complex protein 10A homolog 2 (T-complex protein 10A-2)| (TCP10A-2) (TCP10-like) Length = 215 Score = 29.3 bits (64), Expect = 4.6 Identities = 16/61 (26%), Positives = 25/61 (40%) Frame = +1 Query: 130 LRVQSKNERINPAGQAPAPGSPCTATRPGAAALTTPASLRQDGHLPPVSYAVFTLHRDLA 309 L + E +P P G+ T A LT + G +PP+ + LH++L Sbjct: 6 LEARDPKEGTHPEDPCPGAGAVMEKTAVAAEVLTEDCNT---GEMPPLQQQIIRLHQELG 62 Query: 310 R 312 R Sbjct: 63 R 63
>KSGA_YERPS (Q66EQ8) Dimethyladenosine transferase (EC 2.1.1.-)| (S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase) (16S rRNA dimethylase) (High level kasugamycin resistance protein ksgA) (Kasugamycin dimethyltransferase) Length = 272 Score = 28.9 bits (63), Expect = 6.0 Identities = 18/44 (40%), Positives = 20/44 (45%) Frame = +1 Query: 178 PAPGSPCTATRPGAAALTTPASLRQDGHLPPVSYAVFTLHRDLA 309 P PG PG ALT P + R D H+ V L RDLA Sbjct: 35 PVPGEAVVEIGPGLGALTEPVAARMD-HM-----TVIELDRDLA 72
>KSGA_YERPE (Q8ZIK5) Dimethyladenosine transferase (EC 2.1.1.-)| (S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase) (16S rRNA dimethylase) (High level kasugamycin resistance protein ksgA) (Kasugamycin dimethyltransferase) Length = 272 Score = 28.9 bits (63), Expect = 6.0 Identities = 18/44 (40%), Positives = 20/44 (45%) Frame = +1 Query: 178 PAPGSPCTATRPGAAALTTPASLRQDGHLPPVSYAVFTLHRDLA 309 P PG PG ALT P + R D H+ V L RDLA Sbjct: 35 PVPGEAVVEIGPGLGALTEPVAARMD-HM-----TVIELDRDLA 72
>DIP2A_HUMAN (Q14689) Disco-interacting protein 2 homolog A| Length = 1571 Score = 28.5 bits (62), Expect = 7.9 Identities = 25/94 (26%), Positives = 35/94 (37%), Gaps = 5/94 (5%) Frame = +1 Query: 76 VDSHSTTEE*EEKRATSALRVQSKNERINPAGQAPAPGSPCTATRPGAAALTTPASLRQD 255 + SHS+ E ++ + S + + G P +P A PGAAA T A L Sbjct: 157 LQSHSSVEPWLDRVIQGSSTSSSASSTSSHPGGRPTT-APSAAATPGAAATTALAGLEAH 215 Query: 256 GHL-----PPVSYAVFTLHRDLARSPAAKKSSIP 342 H+ PP H R A S+P Sbjct: 216 THIDLHSAPPDVTTGLVEHSYFERPQVASVRSVP 249
>KSGA_ERWCT (Q6D0E0) Dimethyladenosine transferase (EC 2.1.1.-)| (S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase) (16S rRNA dimethylase) (High level kasugamycin resistance protein ksgA) (Kasugamycin dimethyltransferase) Length = 272 Score = 28.5 bits (62), Expect = 7.9 Identities = 17/44 (38%), Positives = 18/44 (40%) Frame = +1 Query: 178 PAPGSPCTATRPGAAALTTPASLRQDGHLPPVSYAVFTLHRDLA 309 P PG PG ALT P R D + V L RDLA Sbjct: 35 PQPGQAVVEIGPGLGALTAPIGERMD------RFTVIELDRDLA 72
>PERT_PIG (P09933) Thyroid peroxidase precursor (EC 1.11.1.8) (TPO)| Length = 926 Score = 28.5 bits (62), Expect = 7.9 Identities = 23/78 (29%), Positives = 30/78 (38%), Gaps = 5/78 (6%) Frame = +1 Query: 55 SYICIWSVDSHSTTEE*EEKRATSALRVQSKNERINPAGQA-----PAPGSPCTATRPGA 219 S++ +V S +E + TSA + N R AG+A P P P A PG Sbjct: 322 SFLDASTVYGSSPAQEQRLRNWTSAEGLLRVNTRHRDAGRAFLPFAPPPAPPACAPEPGT 381 Query: 220 AALTTPASLRQDGHLPPV 273 A P L D V Sbjct: 382 PAARAPCFLAGDSRASEV 399 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 67,202,909 Number of Sequences: 219361 Number of extensions: 1459916 Number of successful extensions: 5113 Number of sequences better than 10.0: 30 Number of HSP's better than 10.0 without gapping: 4562 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 5088 length of database: 80,573,946 effective HSP length: 102 effective length of database: 58,199,124 effective search space used: 2677159704 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
