>AOX1_SAUGU (P22185) Alternative oxidase, mitochondrial precursor (EC 1.-.-.-)|
          Length = 349

 Score = 74.3 bits (181), Expect = 1e-13
 Identities = 32/37 (86%), Positives = 35/37 (94%)
 Frame = -3

Query: 433 TVVRADEAHHRDVNHFASDVYYQGMELKATPAPIGYH 323
           TVVRADEAHHRDVNHFASDV+YQ +ELK TPAP+GYH
Sbjct: 313 TVVRADEAHHRDVNHFASDVHYQDLELKTTPAPLGYH 349

>AOX1A_ARATH (Q39219) Alternative oxidase 1a, mitochondrial precursor (EC|
           1.-.-.-)
          Length = 354

 Score = 72.0 bits (175), Expect = 6e-13
 Identities = 31/36 (86%), Positives = 33/36 (91%)
 Frame = -3

Query: 430 VVRADEAHHRDVNHFASDVYYQGMELKATPAPIGYH 323
           VVRADEAHHRDVNHFASD++YQG ELK  PAPIGYH
Sbjct: 319 VVRADEAHHRDVNHFASDIHYQGRELKEAPAPIGYH 354

>AOX3_SOYBN (O03376) Alternative oxidase 3, mitochondrial precursor (EC|
           1.-.-.-)
          Length = 326

 Score = 71.6 bits (174), Expect = 8e-13
 Identities = 30/37 (81%), Positives = 34/37 (91%)
 Frame = -3

Query: 433 TVVRADEAHHRDVNHFASDVYYQGMELKATPAPIGYH 323
           TV+RADEAHHRDVNHFASD+++QG ELK  PAPIGYH
Sbjct: 290 TVIRADEAHHRDVNHFASDIHHQGKELKEAPAPIGYH 326

>AOX1_TOBAC (Q41224) Alternative oxidase 1, mitochondrial precursor (EC|
           1.-.-.-)
          Length = 353

 Score = 71.2 bits (173), Expect = 1e-12
 Identities = 30/36 (83%), Positives = 34/36 (94%)
 Frame = -3

Query: 430 VVRADEAHHRDVNHFASDVYYQGMELKATPAPIGYH 323
           VVRADEAHHRDVNHFASD++YQG +LK +PAPIGYH
Sbjct: 318 VVRADEAHHRDVNHFASDIHYQGQQLKDSPAPIGYH 353

>AOX1B_ARATH (O23913) Alternative oxidase 1b, mitochondrial precursor (EC|
           1.-.-.-)
          Length = 325

 Score = 70.9 bits (172), Expect = 1e-12
 Identities = 30/36 (83%), Positives = 33/36 (91%)
 Frame = -3

Query: 430 VVRADEAHHRDVNHFASDVYYQGMELKATPAPIGYH 323
           VVRADEAHHRDVNH+ASD++YQG ELK  PAPIGYH
Sbjct: 290 VVRADEAHHRDVNHYASDIHYQGRELKEAPAPIGYH 325

>AOX2_SOYBN (Q41266) Alternative oxidase 2, mitochondrial precursor (EC|
           1.-.-.-)
          Length = 333

 Score = 70.9 bits (172), Expect = 1e-12
 Identities = 29/37 (78%), Positives = 34/37 (91%)
 Frame = -3

Query: 433 TVVRADEAHHRDVNHFASDVYYQGMELKATPAPIGYH 323
           TV+RADEAHHRDVNHFASD+++QG EL+  PAPIGYH
Sbjct: 297 TVIRADEAHHRDVNHFASDIHFQGKELREAPAPIGYH 333

>AOX1C_ARATH (O22048) Alternative oxidase 1c, mitochondrial precursor (EC|
           1.-.-.-)
          Length = 329

 Score = 70.5 bits (171), Expect = 2e-12
 Identities = 30/36 (83%), Positives = 33/36 (91%)
 Frame = -3

Query: 430 VVRADEAHHRDVNHFASDVYYQGMELKATPAPIGYH 323
           VVRADEAHHRDVNH+ASD++YQG ELK  PAPIGYH
Sbjct: 294 VVRADEAHHRDVNHYASDIHYQGHELKEAPAPIGYH 329

>AOX2_TOBAC (Q40578) Alternative oxidase 2, mitochondrial precursor (EC|
           1.-.-.-)
          Length = 297

 Score = 69.3 bits (168), Expect = 4e-12
 Identities = 29/36 (80%), Positives = 33/36 (91%)
 Frame = -3

Query: 430 VVRADEAHHRDVNHFASDVYYQGMELKATPAPIGYH 323
           VVRADEAHHRDVNHFA D++YQG +LK +PAPIGYH
Sbjct: 262 VVRADEAHHRDVNHFAPDIHYQGQQLKDSPAPIGYH 297

>AOX1_MANIN (Q40294) Alternative oxidase, mitochondrial precursor (EC 1.-.-.-)|
          Length = 318

 Score = 68.2 bits (165), Expect = 8e-12
 Identities = 30/37 (81%), Positives = 32/37 (86%)
 Frame = -3

Query: 433 TVVRADEAHHRDVNHFASDVYYQGMELKATPAPIGYH 323
           TVVRADEAHHRDVNHFASDV  QG EL+  PAP+GYH
Sbjct: 282 TVVRADEAHHRDVNHFASDVQVQGKELRDAPAPVGYH 318

>AOX1_SOYBN (Q07185) Alternative oxidase 1, mitochondrial precursor (EC|
           1.-.-.-)
          Length = 321

 Score = 67.8 bits (164), Expect = 1e-11
 Identities = 29/36 (80%), Positives = 32/36 (88%)
 Frame = -3

Query: 430 VVRADEAHHRDVNHFASDVYYQGMELKATPAPIGYH 323
           VVRADEAHHRDVNHFASD++YQG EL+   APIGYH
Sbjct: 286 VVRADEAHHRDVNHFASDIHYQGRELREAAAPIGYH 321

>AOX3_ARATH (Q8LEE7) Alternative oxidase 3, mitochondrial precursor (EC|
           1.-.-.-)
          Length = 318

 Score = 65.5 bits (158), Expect = 5e-11
 Identities = 26/36 (72%), Positives = 32/36 (88%)
 Frame = -3

Query: 430 VVRADEAHHRDVNHFASDVYYQGMELKATPAPIGYH 323
           V+RADEAHHRD+NH+ASD+ ++G ELK  PAPIGYH
Sbjct: 283 VIRADEAHHRDINHYASDIQFKGHELKEAPAPIGYH 318

>AOX2_ARATH (O22049) Alternative oxidase 2, mitochondrial precursor (EC|
           1.-.-.-)
          Length = 353

 Score = 64.3 bits (155), Expect = 1e-10
 Identities = 28/37 (75%), Positives = 31/37 (83%)
 Frame = -3

Query: 433 TVVRADEAHHRDVNHFASDVYYQGMELKATPAPIGYH 323
           TV+RADEAHHRDVNHFASD+  QG EL+   APIGYH
Sbjct: 317 TVIRADEAHHRDVNHFASDIRNQGKELREAAAPIGYH 353

>AOX_TRYBB (Q26710) Alternative oxidase, mitochondrial precursor (EC 1.-.-.-)|
          Length = 329

 Score = 31.6 bits (70), Expect = 0.87
 Identities = 13/30 (43%), Positives = 20/30 (66%)
 Frame = -3

Query: 430 VVRADEAHHRDVNHFASDVYYQGMELKATP 341
           V+RADEA HR VNH  +D++ + ++    P
Sbjct: 261 VIRADEAEHRVVNHTFADMHEKRLQNSVNP 290

>MFP1_ARATH (Q9LW85) MAR binding filament-like protein 1|
          Length = 726

 Score = 30.8 bits (68), Expect = 1.5
 Identities = 15/33 (45%), Positives = 20/33 (60%)
 Frame = +1

Query: 250 PSKRNTHLLGSSSDAKFSRRRPSLSGIRSAPGW 348
           PS     LL SS+ AKF RRRP+L+ +    G+
Sbjct: 32  PSSSQFGLLCSSNVAKFKRRRPTLASLNQEDGY 64

>FIBA_HUMAN (P02671) Fibrinogen alpha chain precursor [Contains: Fibrinopeptide|
           A]
          Length = 866

 Score = 30.4 bits (67), Expect = 1.9
 Identities = 19/55 (34%), Positives = 23/55 (41%), Gaps = 1/55 (1%)
 Frame = +1

Query: 187 VTKGATIATSY-TAKEPSFPRKPSKRNTHLLGSSSDAKFSRRRPSLSGIRSAPGW 348
           +T+G +  TSY T  E   PR PS   +   GSS       R P  SG      W
Sbjct: 269 ITRGGS--TSYGTGSETESPRNPSSAGSWNSGSSGPGSTGNRNPGSSGTGGTATW 321

>UB2J1_MOUSE (Q9JJZ4) Ubiquitin-conjugating enzyme E2 J1 (EC 6.3.2.19)|
           (Non-canonical ubiquitin-conjugating enzyme 1) (NCUBE1)
          Length = 318

 Score = 30.0 bits (66), Expect = 2.5
 Identities = 20/50 (40%), Positives = 29/50 (58%), Gaps = 6/50 (12%)
 Frame = +1

Query: 193 KGATIATSYTAKEPS-----FPRKPSKRNTHLLGSSSDA-KFSRRRPSLS 324
           +GAT +TSY A+ PS      P +P+ +NT +      A + S+RRPS S
Sbjct: 219 QGATASTSYGAQNPSGAPLPQPTQPAPKNTSMSPRQRRAQQQSQRRPSTS 268

>KIRR1_RAT (Q6X936) Kin of IRRE-like protein 1 precursor (Kin of irregular|
           chiasm-like protein 1) (Nephrin-like protein 1)
          Length = 789

 Score = 29.6 bits (65), Expect = 3.3
 Identities = 19/55 (34%), Positives = 25/55 (45%), Gaps = 1/55 (1%)
 Frame = +1

Query: 199 ATIATSYTAKEPS-FPRKPSKRNTHLLGSSSDAKFSRRRPSLSGIRSAPGWPSAP 360
           A +   Y A  P+ F  +PS R +H  G +    +SR   S  G    P  PSAP
Sbjct: 651 AVLYADYRAPGPTRFDGRPSSRLSHSSGYAQLNTYSRAPASDYGTEPTPSGPSAP 705

>KIRR1_MOUSE (Q80W68) Kin of IRRE-like protein 1 precursor (Kin of irregular|
           chiasm-like protein 1) (Nephrin-like protein 1)
          Length = 789

 Score = 29.6 bits (65), Expect = 3.3
 Identities = 19/55 (34%), Positives = 25/55 (45%), Gaps = 1/55 (1%)
 Frame = +1

Query: 199 ATIATSYTAKEPS-FPRKPSKRNTHLLGSSSDAKFSRRRPSLSGIRSAPGWPSAP 360
           A +   Y A  P+ F  +PS R +H  G +    +SR   S  G    P  PSAP
Sbjct: 651 AVLYADYRAPGPTRFDGRPSSRLSHSSGYAQLNTYSRAPASDYGTEPTPSGPSAP 705

>CD63_MOUSE (P41731) CD63 antigen|
          Length = 237

 Score = 29.6 bits (65), Expect = 3.3
 Identities = 14/38 (36%), Positives = 21/38 (55%)
 Frame = +3

Query: 96  QIGSSLSEMVVQQYPRYVTDKHTAYFSVLDSYQRSNNC 209
           Q+ S  ++   QQ   Y+ D  TA  ++LD  Q+ NNC
Sbjct: 109 QVKSEFNKSFQQQMQNYLKDNKTA--TILDKLQKENNC 144

>PALF_NEUCR (Q7SGZ5) pH-response regulator protein palF/rim-8|
          Length = 927

 Score = 29.3 bits (64), Expect = 4.3
 Identities = 16/48 (33%), Positives = 22/48 (45%)
 Frame = +1

Query: 217 YTAKEPSFPRKPSKRNTHLLGSSSDAKFSRRRPSLSGIRSAPGWPSAP 360
           YTA  PSFP   S    H   +  +  ++  RP   G  +  G PS+P
Sbjct: 834 YTAGGPSFPSAASGNGGHEEETVPEYTYNNHRPGSVGAVTVVGNPSSP 881

>DTX2_MOUSE (Q8R3P2) Protein deltex-2 (Deltex-2) (Deltex2) (mDTX2)|
          Length = 619

 Score = 28.9 bits (63), Expect = 5.7
 Identities = 16/49 (32%), Positives = 23/49 (46%), Gaps = 6/49 (12%)
 Frame = +1

Query: 232 PSFPRKPSKRNTHLLGSSSDAKFSRRRPSLSGIRSAP------GWPSAP 360
           P++P   +   T  +  +  A     +PSLSG RSAP       W +AP
Sbjct: 222 PAYPAPQAPHRTTTVSGAHQAFAPYNKPSLSGARSAPRLNTTNPWAAAP 270

>GAT14_ARATH (Q9FH57) GATA transcription factor 14|
          Length = 339

 Score = 28.9 bits (63), Expect = 5.7
 Identities = 14/48 (29%), Positives = 25/48 (52%), Gaps = 1/48 (2%)
 Frame = +1

Query: 220 TAKEPSFPRKPSKRNTHLLGSSSDAKFS-RRRPSLSGIRSAPGWPSAP 360
           T++ P FP+K  KR+   + S    +   +R+ S  G++  P W + P
Sbjct: 219 TSERPPFPKKHKKRSAESVFSGELQQLQPQRKCSHCGVQKTPQWRAGP 266

>PPR1_YEAST (P07272) Pyrimidine pathway regulatory protein 1|
          Length = 904

 Score = 28.1 bits (61), Expect = 9.7
 Identities = 18/57 (31%), Positives = 24/57 (42%)
 Frame = -3

Query: 178 TEK*AVCLSVTYLGYC*TTISLKDEPIWLTPQYLRCQTTIDLPHYVHIPYLNITVPF 8
           TEK  VC SV    Y            W T Q +  +  ++LP   HIPY  + + F
Sbjct: 355 TEKIDVCSSVDVPWY----------DTWETSQKVNMRPIVELPTKFHIPYFFLNIIF 401


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 53,893,262
Number of Sequences: 219361
Number of extensions: 941029
Number of successful extensions: 3436
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 3380
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3436
length of database: 80,573,946
effective HSP length: 101
effective length of database: 58,418,485
effective search space used: 2511994855
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)