ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbart22f12
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|AC154480.2| Mus musculus BAC clone RP24-135M1 from 13, comple... 42 0.99
2gb|AF056631.1|AF056631 Arabidopsis thaliana Ty3/gypsy retrotrans... 42 0.99
3gb|AF056632.1|AF056632 Arabidopsis thaliana Ty3/gypsy retrotrans... 42 0.99
4gb|AC006085.1| Arabidopsis thaliana chromosome I BAC F11M15 geno... 42 0.99
5ref|XM_507431.1| PREDICTED Oryza sativa (japonica cultivar-group... 40 3.9
6ref|XM_463878.1| Oryza sativa (japonica cultivar-group), mRNA 40 3.9
7ref|XM_506685.2| PREDICTED Oryza sativa (japonica cultivar-group... 40 3.9
8emb|CR383678.10| Zebrafish DNA sequence from clone DKEY-205B5 in... 40 3.9
9emb|BX571945.15| Zebrafish DNA sequence from clone DKEY-267I17 i... 40 3.9
10dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D... 40 3.9
11gb|AC019197.7| Homo sapiens BAC clone RP11-361O8 from 2, complet... 40 3.9
12dbj|BA000028.3| Oceanobacillus iheyensis HTE831 DNA, complete ge... 40 3.9
13dbj|AP004121.3| Oryza sativa (japonica cultivar-group) genomic D... 40 3.9
14dbj|AK104188.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 3.9
15dbj|AK103434.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 3.9
16dbj|AK060881.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 3.9
17gb|AC153848.5| Mus musculus 6 BAC RP23-111L15 (Roswell Park Canc... 40 3.9 
>gb|AC154480.2| Mus musculus BAC clone RP24-135M1 from 13, complete sequence
          Length = 171846

 Score = 42.1 bits (21), Expect = 0.99
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 160    gacaagtgaccccaaaacaac 180
              |||||||||||||||||||||
Sbjct: 132293 gacaagtgaccccaaaacaac 132273
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>gb|AF056631.1|AF056631 Arabidopsis thaliana Ty3/gypsy retrotransposon Tat1-1 gag pseudogene,
            complete sequence
          Length = 3979

 Score = 42.1 bits (21), Expect = 0.99
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 230  gggacctgacaaactttctga 250
            |||||||||||||||||||||
Sbjct: 1330 gggacctgacaaactttctga 1310
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>gb|AF056632.1|AF056632 Arabidopsis thaliana Ty3/gypsy retrotransposon Tat1-2 gag pseudogene,
            complete sequence
          Length = 4038

 Score = 42.1 bits (21), Expect = 0.99
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 230  gggacctgacaaactttctga 250
            |||||||||||||||||||||
Sbjct: 1341 gggacctgacaaactttctga 1321
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>gb|AC006085.1| Arabidopsis thaliana chromosome I BAC F11M15 genomic sequence, complete
             sequence
          Length = 105807

 Score = 42.1 bits (21), Expect = 0.99
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 230   gggacctgacaaactttctga 250
             |||||||||||||||||||||
Sbjct: 22782 gggacctgacaaactttctga 22802
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>ref|XM_507431.1| PREDICTED Oryza sativa (japonica cultivar-group), OJ1442_E05.19
           mRNA
          Length = 1093

 Score = 40.1 bits (20), Expect = 3.9
 Identities = 29/32 (90%)
 Strand = Plus / Minus

                                           
Query: 112 gcaagaggggcaagatccagattaattacagg 143
           |||||||||  | |||||||||||||||||||
Sbjct: 997 gcaagagggttacgatccagattaattacagg 966
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>ref|XM_463878.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1093

 Score = 40.1 bits (20), Expect = 3.9
 Identities = 29/32 (90%)
 Strand = Plus / Minus

                                           
Query: 112 gcaagaggggcaagatccagattaattacagg 143
           |||||||||  | |||||||||||||||||||
Sbjct: 997 gcaagagggttacgatccagattaattacagg 966
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>ref|XM_506685.2| PREDICTED Oryza sativa (japonica cultivar-group), OJ1442_E05.19 mRNA
          Length = 1325

 Score = 40.1 bits (20), Expect = 3.9
 Identities = 29/32 (90%)
 Strand = Plus / Minus

                                            
Query: 112  gcaagaggggcaagatccagattaattacagg 143
            |||||||||  | |||||||||||||||||||
Sbjct: 1161 gcaagagggttacgatccagattaattacagg 1130
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>emb|CR383678.10| Zebrafish DNA sequence from clone DKEY-205B5 in linkage group 5, complete
              sequence
          Length = 198392

 Score = 40.1 bits (20), Expect = 3.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 98     aatatattttccaagcaaga 117
              ||||||||||||||||||||
Sbjct: 111311 aatatattttccaagcaaga 111292
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>emb|BX571945.15| Zebrafish DNA sequence from clone DKEY-267I17 in linkage group 5,
              complete sequence
          Length = 192769

 Score = 40.1 bits (20), Expect = 3.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 98     aatatattttccaagcaaga 117
              ||||||||||||||||||||
Sbjct: 188856 aatatattttccaagcaaga 188837
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>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2,
              complete sequence
          Length = 35954743

 Score = 40.1 bits (20), Expect = 3.9
 Identities = 29/32 (90%)
 Strand = Plus / Plus

                                              
Query: 112    gcaagaggggcaagatccagattaattacagg 143
              |||||||||  | |||||||||||||||||||
Sbjct: 876128 gcaagagggttacgatccagattaattacagg 876159
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>gb|AC019197.7| Homo sapiens BAC clone RP11-361O8 from 2, complete sequence
          Length = 178255

 Score = 40.1 bits (20), Expect = 3.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 87     tggtagcactgaatatattt 106
              ||||||||||||||||||||
Sbjct: 141283 tggtagcactgaatatattt 141264
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>dbj|BA000028.3| Oceanobacillus iheyensis HTE831 DNA, complete genome
          Length = 3630528

 Score = 40.1 bits (20), Expect = 3.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 162     caagtgaccccaaaacaaca 181
               ||||||||||||||||||||
Sbjct: 2302270 caagtgaccccaaaacaaca 2302289
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>dbj|AP004121.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
             clone:OJ1442_E05
          Length = 162407

 Score = 40.1 bits (20), Expect = 3.9
 Identities = 29/32 (90%)
 Strand = Plus / Plus

                                             
Query: 112   gcaagaggggcaagatccagattaattacagg 143
             |||||||||  | |||||||||||||||||||
Sbjct: 85336 gcaagagggttacgatccagattaattacagg 85367
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>dbj|AK104188.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-303-B03, full
           insert sequence
          Length = 1093

 Score = 40.1 bits (20), Expect = 3.9
 Identities = 29/32 (90%)
 Strand = Plus / Minus

                                           
Query: 112 gcaagaggggcaagatccagattaattacagg 143
           |||||||||  | |||||||||||||||||||
Sbjct: 997 gcaagagggttacgatccagattaattacagg 966
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>dbj|AK103434.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033129B02, full
            insert sequence
          Length = 1325

 Score = 40.1 bits (20), Expect = 3.9
 Identities = 29/32 (90%)
 Strand = Plus / Minus

                                            
Query: 112  gcaagaggggcaagatccagattaattacagg 143
            |||||||||  | |||||||||||||||||||
Sbjct: 1161 gcaagagggttacgatccagattaattacagg 1130
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>dbj|AK060881.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-035-A10, full
           insert sequence
          Length = 1093

 Score = 40.1 bits (20), Expect = 3.9
 Identities = 29/32 (90%)
 Strand = Plus / Minus

                                           
Query: 112 gcaagaggggcaagatccagattaattacagg 143
           |||||||||  | |||||||||||||||||||
Sbjct: 997 gcaagagggttacgatccagattaattacagg 966
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>gb|AC153848.5| Mus musculus 6 BAC RP23-111L15 (Roswell Park Cancer Institute (C57BL/6J
             Female) Mouse BAC Library) complete sequence
          Length = 187830

 Score = 40.1 bits (20), Expect = 3.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 97    gaatatattttccaagcaag 116
             ||||||||||||||||||||
Sbjct: 97904 gaatatattttccaagcaag 97885


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,754,712
Number of Sequences: 3902068
Number of extensions: 2754712
Number of successful extensions: 51075
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 51039
Number of HSP's gapped (non-prelim): 36
length of query: 297
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 275
effective length of database: 17,147,199,772
effective search space: 4715479937300
effective search space used: 4715479937300
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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