ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbart22f10
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|AY057118.1| Triticum aestivum cold acclimation protein WCOR41... 519 e-144
2ref|XM_469914.1| Oryza sativa (japonica cultivar-group), mRNA 143 5e-31
3gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 143 5e-31
4gb|AC107207.9| Oryza sativa chromosome 3 BAC OSJNBb0106M04 genom... 143 5e-31
5gb|AC099043.6| Oryza sativa chromosome 3 BAC OSJNBa0079B15 genom... 143 5e-31
6gb|AF283006.1| Oryza sativa (japonica cultivar-group) cold accli... 143 5e-31
7dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 143 5e-31
8dbj|AK066036.1| Oryza sativa (japonica cultivar-group) cDNA clon... 143 5e-31
9dbj|AK060906.1| Oryza sativa (japonica cultivar-group) cDNA clon... 143 5e-31
10dbj|AK060000.1| Oryza sativa (japonica cultivar-group) cDNA clon... 143 5e-31
11gb|BT017742.1| Zea mays clone EL01N0449E04.c mRNA sequence 131 2e-27
12gb|AY181208.1| Zea mays cold acclimation protein COR413-PM1 mRNA... 131 2e-27
13gb|AY106041.1| Zea mays PCO103483 mRNA sequence 131 2e-27
14gb|U73216.1|TAU73216 Triticum aestivum cold acclimation protein ... 111 2e-21
15gb|AY112320.1| Zea mays CL360_-2 mRNA sequence 76 1e-10
16gb|AC027506.12| Homo sapiens chromosome 18, clone RP11-762J3, co... 46 0.088
17gb|AC137970.10| Mus musculus chromosome 3, clone RP23-438E13, co... 44 0.35
18gb|AC102196.7| Mus musculus chromosome 3, clone RP24-445M20, com... 44 0.35
19emb|CT009738.8| Mouse DNA sequence from clone RP23-217H9 on chro... 42 1.4
20gb|AC159814.2| Mus musculus BAC clone RP23-389H15 from chromosom... 42 1.4
21dbj|AP001095.5| Homo sapiens genomic DNA, chromosome 18 clone:RP... 42 1.4
22gb|CP000096.1| Pelodictyon luteolum DSM 273, complete genome 40 5.4
23gb|AY796304.1| Homo sapiens transforming growth factor, beta rec... 40 5.4
24gb|AY713945.1| Gasterosteus aculeatus MHC class II antigen gene ... 40 5.4
25emb|AL445992.15| Human DNA sequence from clone RP11-324C23 on ch... 40 5.4
26gb|AC008761.8| Homo sapiens chromosome 19 clone CTD-3149D2, comp... 40 5.4
27gb|AC011132.15| Homo sapiens chromosome 8, clone RP11-360M9, com... 40 5.4
28gb|AC158401.5| Mus musculus chromosome 7, clone RP23-84N6, compl... 40 5.4
29gb|AC154450.3| Mus musculus BAC clone RP24-169J2 from chromosome... 40 5.4
30gb|AY129330.1| Mycobacteriopahge Che8, complete sequence 40 5.4
31gb|AC157557.5| Mus musculus chromosome 7, clone RP24-369M22, com... 40 5.4
32gb|AC078929.27| Homo sapiens 12 BAC RP11-797M17 (Roswell Park Ca... 40 5.4
33dbj|BA000039.2| Thermosynechococcus elongatus BP-1 DNA, complete... 40 5.4
34dbj|AP006618.1| Nocardia farcinica IFM 10152 DNA, complete genome 40 5.4 
>gb|AY057118.1| Triticum aestivum cold acclimation protein WCOR413-like protein
           beta form mRNA, complete cds
          Length = 993

 Score =  519 bits (262), Expect = e-144
 Identities = 339/364 (93%), Gaps = 8/364 (2%)
 Strand = Plus / Minus

                                                                       
Query: 49  atcaaggaaacaaagacctgacaccaaaactacaacaaatcgaaacatgtccatcagaa- 107
           ||||||||||||||||||| | |||| |||||||||||||||||||||||||||||||| 
Sbjct: 888 atcaaggaaacaaagacctcataccagaactacaacaaatcgaaacatgtccatcagaaa 829

                                                                       
Query: 108 ggtacaagcgcgcagagttcatcgactccgga-------taccgaatcaccatcgaaaag 160
           ||||||| || ||| ||||||||| |||||||       |||| ||||||||||||||  
Sbjct: 828 ggtacaaacgtgcacagttcatcggctccggacgagcaataccaaatcaccatcgaaagc 769

                                                                       
Query: 161 gtctacacgatgaatccccaaacatcgaacagaactgcacaaaccaatcaatggccacac 220
           |||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||
Sbjct: 768 gtctacacgatgaatccccaaacagcgaacagaactgcacaagccaatcaatggccacac 709

                                                                       
Query: 221 tgatagcagtagatgtcctacaggaaccacagcaccaggacccagactgggtagacgaag 280
            |||||||||||||||||||||||| ||| ||||||||||||||||||||||| ||||||
Sbjct: 708 cgatagcagtagatgtcctacaggagccagagcaccaggacccagactgggtaaacgaag 649

                                                                       
Query: 281 agcaggacgatgccgatggtgttggatacgccattggccttcctgaaggcctccctgaag 340
           |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 648 agcaggacgatgccgatggtgttggacacgccattggccttcctgaaggcctccctgaag 589

                                                                       
Query: 341 cctcctgacaccctgatgtgctcttgaagcaggtagcacccgatggcgaggcatatgaag 400
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 588 cctcctgacaccctgatgtgctcttgaagcaggtagcacccgatggcgaggcatatgaag 529

               
Query: 401 acgc 404
           ||||
Sbjct: 528 acgc 525



 Score = 58.0 bits (29), Expect = 2e-05
 Identities = 53/61 (86%)
 Strand = Plus / Minus

                                                                       
Query: 5   aatcaacaatgatgatgtttttattgatggtcctgtacacacggatcaaggaaacaaaga 64
           |||||||| |||||||||||||||||||  |  ||||| |||  ||||||||||||||||
Sbjct: 966 aatcaacagtgatgatgtttttattgataattatgtacccacaaatcaaggaaacaaaga 907

            
Query: 65  c 65
           |
Sbjct: 906 c 906
to top
>ref|XM_469914.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1118

 Score =  143 bits (72), Expect = 5e-31
 Identities = 132/152 (86%)
 Strand = Plus / Minus

                                                                       
Query: 250 cagcaccaggacccagactgggtagacgaagagcaggacgatgccgatggtgttggatac 309
           |||||||||| ||||||| ||||||| |||||||| || |||||| ||| ||||||| ||
Sbjct: 755 cagcaccagggcccagacagggtagatgaagagcaagaggatgccaatgctgttggacac 696

                                                                       
Query: 310 gccattggccttcctgaaggcctccctgaagcctcctgacaccctgatgtgctcttgaag 369
            || ||| ||||||||||||| | |||||| || |||||| |||||||||||||||||||
Sbjct: 695 tccgttgcccttcctgaaggcgttcctgaatccacctgacgccctgatgtgctcttgaag 636

                                           
Query: 370 caggtagcacccgatggcgaggcatatgaaga 401
           ||||||||| || |||  ||||||||||||||
Sbjct: 635 caggtagcatccaatgatgaggcatatgaaga 604
to top
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score =  143 bits (72), Expect = 5e-31
 Identities = 132/152 (86%)
 Strand = Plus / Minus

                                                                            
Query: 250      cagcaccaggacccagactgggtagacgaagagcaggacgatgccgatggtgttggatac 309
                |||||||||| ||||||| ||||||| |||||||| || |||||| ||| ||||||| ||
Sbjct: 31488972 cagcaccagggcccagacagggtagatgaagagcaagaggatgccaatgctgttggacac 31488913

                                                                            
Query: 310      gccattggccttcctgaaggcctccctgaagcctcctgacaccctgatgtgctcttgaag 369
                 || ||| ||||||||||||| | |||||| || |||||| |||||||||||||||||||
Sbjct: 31488912 tccgttgcccttcctgaaggcgttcctgaatccacctgacgccctgatgtgctcttgaag 31488853

                                                
Query: 370      caggtagcacccgatggcgaggcatatgaaga 401
                ||||||||| || |||  ||||||||||||||
Sbjct: 31488852 caggtagcatccaatgatgaggcatatgaaga 31488821
to top
>gb|AC107207.9| Oryza sativa chromosome 3 BAC OSJNBb0106M04 genomic sequence, complete
              sequence
          Length = 133449

 Score =  143 bits (72), Expect = 5e-31
 Identities = 132/152 (86%)
 Strand = Plus / Plus

                                                                          
Query: 250    cagcaccaggacccagactgggtagacgaagagcaggacgatgccgatggtgttggatac 309
              |||||||||| ||||||| ||||||| |||||||| || |||||| ||| ||||||| ||
Sbjct: 103624 cagcaccagggcccagacagggtagatgaagagcaagaggatgccaatgctgttggacac 103683

                                                                          
Query: 310    gccattggccttcctgaaggcctccctgaagcctcctgacaccctgatgtgctcttgaag 369
               || ||| ||||||||||||| | |||||| || |||||| |||||||||||||||||||
Sbjct: 103684 tccgttgcccttcctgaaggcgttcctgaatccacctgacgccctgatgtgctcttgaag 103743

                                              
Query: 370    caggtagcacccgatggcgaggcatatgaaga 401
              ||||||||| || |||  ||||||||||||||
Sbjct: 103744 caggtagcatccaatgatgaggcatatgaaga 103775
to top
>gb|AC099043.6| Oryza sativa chromosome 3 BAC OSJNBa0079B15 genomic sequence,
            complete sequence
          Length = 159091

 Score =  143 bits (72), Expect = 5e-31
 Identities = 132/152 (86%)
 Strand = Plus / Plus

                                                                        
Query: 250  cagcaccaggacccagactgggtagacgaagagcaggacgatgccgatggtgttggatac 309
            |||||||||| ||||||| ||||||| |||||||| || |||||| ||| ||||||| ||
Sbjct: 6828 cagcaccagggcccagacagggtagatgaagagcaagaggatgccaatgctgttggacac 6887

                                                                        
Query: 310  gccattggccttcctgaaggcctccctgaagcctcctgacaccctgatgtgctcttgaag 369
             || ||| ||||||||||||| | |||||| || |||||| |||||||||||||||||||
Sbjct: 6888 tccgttgcccttcctgaaggcgttcctgaatccacctgacgccctgatgtgctcttgaag 6947

                                            
Query: 370  caggtagcacccgatggcgaggcatatgaaga 401
            ||||||||| || |||  ||||||||||||||
Sbjct: 6948 caggtagcatccaatgatgaggcatatgaaga 6979
to top
>gb|AF283006.1| Oryza sativa (japonica cultivar-group) cold acclimation protein
           WCOR413-like protein mRNA, complete cds
          Length = 1057

 Score =  143 bits (72), Expect = 5e-31
 Identities = 132/152 (86%)
 Strand = Plus / Minus

                                                                       
Query: 250 cagcaccaggacccagactgggtagacgaagagcaggacgatgccgatggtgttggatac 309
           |||||||||| ||||||| ||||||| |||||||| || |||||| ||| ||||||| ||
Sbjct: 728 cagcaccagggcccagacagggtagatgaagagcaagaggatgccaatgctgttggacac 669

                                                                       
Query: 310 gccattggccttcctgaaggcctccctgaagcctcctgacaccctgatgtgctcttgaag 369
            || ||| ||||||||||||| | |||||| || |||||| |||||||||||||||||||
Sbjct: 668 tccgttgcccttcctgaaggcgttcctgaatccacctgacgccctgatgtgctcttgaag 609

                                           
Query: 370 caggtagcacccgatggcgaggcatatgaaga 401
           ||||||||| || |||  ||||||||||||||
Sbjct: 608 caggtagcatccaatgatgaggcatatgaaga 577
to top
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
                sequence
          Length = 36192742

 Score =  143 bits (72), Expect = 5e-31
 Identities = 132/152 (86%)
 Strand = Plus / Minus

                                                                            
Query: 250      cagcaccaggacccagactgggtagacgaagagcaggacgatgccgatggtgttggatac 309
                |||||||||| ||||||| ||||||| |||||||| || |||||| ||| ||||||| ||
Sbjct: 31579488 cagcaccagggcccagacagggtagatgaagagcaagaggatgccaatgctgttggacac 31579429

                                                                            
Query: 310      gccattggccttcctgaaggcctccctgaagcctcctgacaccctgatgtgctcttgaag 369
                 || ||| ||||||||||||| | |||||| || |||||| |||||||||||||||||||
Sbjct: 31579428 tccgttgcccttcctgaaggcgttcctgaatccacctgacgccctgatgtgctcttgaag 31579369

                                                
Query: 370      caggtagcacccgatggcgaggcatatgaaga 401
                ||||||||| || |||  ||||||||||||||
Sbjct: 31579368 caggtagcatccaatgatgaggcatatgaaga 31579337
to top
>dbj|AK066036.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013049B03, full
           insert sequence
          Length = 1116

 Score =  143 bits (72), Expect = 5e-31
 Identities = 132/152 (86%)
 Strand = Plus / Minus

                                                                       
Query: 250 cagcaccaggacccagactgggtagacgaagagcaggacgatgccgatggtgttggatac 309
           |||||||||| ||||||| ||||||| |||||||| || |||||| ||| ||||||| ||
Sbjct: 752 cagcaccagggcccagacagggtagatgaagagcaagaggatgccaatgctgttggacac 693

                                                                       
Query: 310 gccattggccttcctgaaggcctccctgaagcctcctgacaccctgatgtgctcttgaag 369
            || ||| ||||||||||||| | |||||| || |||||| |||||||||||||||||||
Sbjct: 692 tccgttgcccttcctgaaggcgttcctgaatccacctgacgccctgatgtgctcttgaag 633

                                           
Query: 370 caggtagcacccgatggcgaggcatatgaaga 401
           ||||||||| || |||  ||||||||||||||
Sbjct: 632 caggtagcatccaatgatgaggcatatgaaga 601
to top
>dbj|AK060906.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-035-F05, full
           insert sequence
          Length = 1031

 Score =  143 bits (72), Expect = 5e-31
 Identities = 132/152 (86%)
 Strand = Plus / Minus

                                                                       
Query: 250 cagcaccaggacccagactgggtagacgaagagcaggacgatgccgatggtgttggatac 309
           |||||||||| ||||||| ||||||| |||||||| || |||||| ||| ||||||| ||
Sbjct: 724 cagcaccagggcccagacagggtagatgaagagcaagaggatgccaatgctgttggacac 665

                                                                       
Query: 310 gccattggccttcctgaaggcctccctgaagcctcctgacaccctgatgtgctcttgaag 369
            || ||| ||||||||||||| | |||||| || |||||| |||||||||||||||||||
Sbjct: 664 tccgttgcccttcctgaaggcgttcctgaatccacctgacgccctgatgtgctcttgaag 605

                                           
Query: 370 caggtagcacccgatggcgaggcatatgaaga 401
           ||||||||| || |||  ||||||||||||||
Sbjct: 604 caggtagcatccaatgatgaggcatatgaaga 573
to top
>dbj|AK060000.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-301-G09, full
           insert sequence
          Length = 1061

 Score =  143 bits (72), Expect = 5e-31
 Identities = 132/152 (86%)
 Strand = Plus / Minus

                                                                       
Query: 250 cagcaccaggacccagactgggtagacgaagagcaggacgatgccgatggtgttggatac 309
           |||||||||| ||||||| ||||||| |||||||| || |||||| ||| ||||||| ||
Sbjct: 772 cagcaccagggcccagacagggtagatgaagagcaagaggatgccaatgctgttggacac 713

                                                                       
Query: 310 gccattggccttcctgaaggcctccctgaagcctcctgacaccctgatgtgctcttgaag 369
            || ||| ||||||||||||| | |||||| || |||||| |||||||||||||||||||
Sbjct: 712 tccgttgcccttcctgaaggcgttcctgaatccacctgacgccctgatgtgctcttgaag 653

                                           
Query: 370 caggtagcacccgatggcgaggcatatgaaga 401
           ||||||||| || |||  ||||||||||||||
Sbjct: 652 caggtagcatccaatgatgaggcatatgaaga 621
to top
>gb|BT017742.1| Zea mays clone EL01N0449E04.c mRNA sequence
          Length = 1064

 Score =  131 bits (66), Expect = 2e-27
 Identities = 123/142 (86%)
 Strand = Plus / Minus

                                                                       
Query: 261 cccagactgggtagacgaagagcaggacgatgccgatggtgttggatacgccattggcct 320
           ||||||| ||||||| ||||||||||| ||||||||||| |||||| || |||||| |||
Sbjct: 713 cccagacagggtagatgaagagcaggaggatgccgatggagttggacacaccattgccct 654

                                                                       
Query: 321 tcctgaaggcctccctgaagcctcctgacaccctgatgtgctcttgaagcaggtagcacc 380
           |||||||||| | |||||| || |||||| || ||||||| ||||| ||||||||||| |
Sbjct: 653 tcctgaaggcgttcctgaatccacctgacgccttgatgtgttcttggagcaggtagcatc 594

                                 
Query: 381 cgatggcgaggcatatgaagac 402
           ||||  | ||||||||||||||
Sbjct: 593 cgatcacaaggcatatgaagac 572
to top
>gb|AY181208.1| Zea mays cold acclimation protein COR413-PM1 mRNA, complete cds
          Length = 1126

 Score =  131 bits (66), Expect = 2e-27
 Identities = 123/142 (86%)
 Strand = Plus / Minus

                                                                       
Query: 261 cccagactgggtagacgaagagcaggacgatgccgatggtgttggatacgccattggcct 320
           ||||||| ||||||| ||||||||||| ||||||||||| |||||| || |||||| |||
Sbjct: 685 cccagacagggtagatgaagagcaggaggatgccgatggagttggacacaccattgccct 626

                                                                       
Query: 321 tcctgaaggcctccctgaagcctcctgacaccctgatgtgctcttgaagcaggtagcacc 380
           |||||||||| | |||||| || |||||| || ||||||| ||||| ||||||||||| |
Sbjct: 625 tcctgaaggcgttcctgaatccacctgacgccttgatgtgttcttggagcaggtagcatc 566

                                 
Query: 381 cgatggcgaggcatatgaagac 402
           ||||  | ||||||||||||||
Sbjct: 565 cgatcacaaggcatatgaagac 544
to top
>gb|AY106041.1| Zea mays PCO103483 mRNA sequence
          Length = 1220

 Score =  131 bits (66), Expect = 2e-27
 Identities = 123/142 (86%)
 Strand = Plus / Minus

                                                                       
Query: 261 cccagactgggtagacgaagagcaggacgatgccgatggtgttggatacgccattggcct 320
           ||||||| ||||||| ||||||||||| ||||||||||| |||||| || |||||| |||
Sbjct: 873 cccagacagggtagatgaagagcaggaggatgccgatggagttggacacaccattgccct 814

                                                                       
Query: 321 tcctgaaggcctccctgaagcctcctgacaccctgatgtgctcttgaagcaggtagcacc 380
           |||||||||| | |||||| || |||||| || ||||||| ||||| ||||||||||| |
Sbjct: 813 tcctgaaggcgttcctgaatccacctgacgccttgatgtgttcttggagcaggtagcatc 754

                                 
Query: 381 cgatggcgaggcatatgaagac 402
           ||||  | ||||||||||||||
Sbjct: 753 cgatcacaaggcatatgaagac 732
to top
>gb|U73216.1|TAU73216 Triticum aestivum cold acclimation protein WCOR413 (Wcor413) mRNA,
           complete cds
          Length = 896

 Score =  111 bits (56), Expect = 2e-21
 Identities = 125/148 (84%)
 Strand = Plus / Minus

                                                                       
Query: 238 ctacaggaaccacagcaccaggacccagactgggtagacgaagagcaggacgatgccgat 297
           ||||||||||||||  || | | ||||||| ||||||| |||||| |||| |||||||||
Sbjct: 696 ctacaggaaccacatgacgacggcccagaccgggtagatgaagaggaggaggatgccgat 637

                                                                       
Query: 298 ggtgttggatacgccattggccttcctgaaggcctccctgaagcctcctgacaccctgat 357
           |||||||||   |||||||| ||||  |||||||||| ||| ||| || ||| || ||||
Sbjct: 636 ggtgttggaccagccattgggcttctggaaggcctccttgaggccccccgacgccttgat 577

                                       
Query: 358 gtgctcttgaagcaggtagcacccgatg 385
           |||||| || ||||||||||||||||||
Sbjct: 576 gtgctcgtggagcaggtagcacccgatg 549
to top
>gb|AY112320.1| Zea mays CL360_-2 mRNA sequence
          Length = 661

 Score = 75.8 bits (38), Expect = 1e-10
 Identities = 53/58 (91%)
 Strand = Plus / Minus

                                                                     
Query: 345 ctgacaccctgatgtgctcttgaagcaggtagcacccgatggcgaggcatatgaagac 402
           ||||| |||||||||||||||| ||||||||||| ||||| || ||||||||||||||
Sbjct: 262 ctgacgccctgatgtgctcttggagcaggtagcatccgatcgcaaggcatatgaagac 205
to top
>gb|AC027506.12| Homo sapiens chromosome 18, clone RP11-762J3, complete sequence
          Length = 189781

 Score = 46.1 bits (23), Expect = 0.088
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                    
Query: 62    agacctgacaccaaaactacaac 84
             |||||||||||||||||||||||
Sbjct: 18044 agacctgacaccaaaactacaac 18066
to top
>gb|AC137970.10| Mus musculus chromosome 3, clone RP23-438E13, complete sequence
          Length = 212827

 Score = 44.1 bits (22), Expect = 0.35
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 56    aaacaaagacctgacaccaaaa 77
             ||||||||||||||||||||||
Sbjct: 20577 aaacaaagacctgacaccaaaa 20556
to top
>gb|AC102196.7| Mus musculus chromosome 3, clone RP24-445M20, complete sequence
          Length = 166532

 Score = 44.1 bits (22), Expect = 0.35
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 56    aaacaaagacctgacaccaaaa 77
             ||||||||||||||||||||||
Sbjct: 45002 aaacaaagacctgacaccaaaa 45023
to top
>emb|CT009738.8| Mouse DNA sequence from clone RP23-217H9 on chromosome 12, complete
             sequence
          Length = 209619

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 238   ctacaggaaccacagcaccag 258
             |||||||||||||||||||||
Sbjct: 22753 ctacaggaaccacagcaccag 22733
to top
>gb|AC159814.2| Mus musculus BAC clone RP23-389H15 from chromosome 12, complete
             sequence
          Length = 209280

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 238   ctacaggaaccacagcaccag 258
             |||||||||||||||||||||
Sbjct: 92501 ctacaggaaccacagcaccag 92481
to top
>dbj|AP001095.5| Homo sapiens genomic DNA, chromosome 18 clone:RP11-802O4, complete
              sequence
          Length = 187824

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 333    ccctgaagcctcctgacaccc 353
              |||||||||||||||||||||
Sbjct: 132987 ccctgaagcctcctgacaccc 133007
to top
>gb|CP000096.1| Pelodictyon luteolum DSM 273, complete genome
          Length = 2364842

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                       
Query: 274     gacgaagagcaggacgatgccgat 297
               ||||||||||| ||||||||||||
Sbjct: 1930168 gacgaagagcatgacgatgccgat 1930145
to top
>gb|AY796304.1| Homo sapiens transforming growth factor, beta receptor III (betaglycan,
              300kDa) (TGFBR3) gene, complete cds
          Length = 226174

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 318    ccttcctgaaggcctccctg 337
              ||||||||||||||||||||
Sbjct: 159484 ccttcctgaaggcctccctg 159465
to top
>gb|AY713945.1| Gasterosteus aculeatus MHC class II antigen gene cluster, complete
             sequence
          Length = 99318

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 197   gcacaaaccaatcaatggcc 216
             ||||||||||||||||||||
Sbjct: 81145 gcacaaaccaatcaatggcc 81164
to top
>emb|AL445992.15| Human DNA sequence from clone RP11-324C23 on chromosome 1 Contains part
             of the TGFBR3 gene fortransforming growth factor, beta
             receptor III (betaglycan, 300kDa), complete sequence
          Length = 34325

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 318   ccttcctgaaggcctccctg 337
             ||||||||||||||||||||
Sbjct: 34166 ccttcctgaaggcctccctg 34185
to top
>gb|AC008761.8| Homo sapiens chromosome 19 clone CTD-3149D2, complete sequence
          Length = 226170

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 11    caatgatgatgtttttattgatgg 34
             ||||||||||||||||||| ||||
Sbjct: 92347 caatgatgatgtttttattaatgg 92324
to top
>gb|AC011132.15| Homo sapiens chromosome 8, clone RP11-360M9, complete sequence
          Length = 216334

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 51    caaggaaacaaagacctgac 70
             ||||||||||||||||||||
Sbjct: 92242 caaggaaacaaagacctgac 92223
to top
>gb|AC158401.5| Mus musculus chromosome 7, clone RP23-84N6, complete sequence
          Length = 247769

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 52   aaggaaacaaagacctgaca 71
            ||||||||||||||||||||
Sbjct: 1464 aaggaaacaaagacctgaca 1445
to top
>gb|AC154450.3| Mus musculus BAC clone RP24-169J2 from chromosome 12, complete sequence
          Length = 168477

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 11    caatgatgatgtttttattgatgg 34
             |||||||||| |||||||||||||
Sbjct: 96925 caatgatgatatttttattgatgg 96948
to top
>gb|AY129330.1| Mycobacteriopahge Che8, complete sequence
          Length = 59471

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 286   gacgatgccgatggtgttgg 305
             ||||||||||||||||||||
Sbjct: 58072 gacgatgccgatggtgttgg 58053
to top
>gb|AC157557.5| Mus musculus chromosome 7, clone RP24-369M22, complete sequence
          Length = 202543

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 52     aaggaaacaaagacctgaca 71
              ||||||||||||||||||||
Sbjct: 195672 aaggaaacaaagacctgaca 195653
to top
>gb|AC078929.27| Homo sapiens 12 BAC RP11-797M17 (Roswell Park Cancer Institute Human
             BAC Library) complete sequence
          Length = 107895

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 253   caccaggacccagactgggt 272
             ||||||||||||||||||||
Sbjct: 35349 caccaggacccagactgggt 35368
to top
>dbj|BA000039.2| Thermosynechococcus elongatus BP-1 DNA, complete genome
          Length = 2593857

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 240     acaggaaccacagcaccagg 259
               ||||||||||||||||||||
Sbjct: 1645209 acaggaaccacagcaccagg 1645190
to top
>dbj|AP006618.1| Nocardia farcinica IFM 10152 DNA, complete genome
          Length = 6021225

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                       
Query: 275     acgaagagcaggacgatgccgatg 298
               |||||||||||| |||||||||||
Sbjct: 2496734 acgaagagcaggccgatgccgatg 2496711


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,217,120
Number of Sequences: 3902068
Number of extensions: 3217120
Number of successful extensions: 63566
Number of sequences better than 10.0: 34
Number of HSP's better than 10.0 without gapping: 34
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 63417
Number of HSP's gapped (non-prelim): 148
length of query: 404
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 382
effective length of database: 17,147,199,772
effective search space: 6550230312904
effective search space used: 6550230312904
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
to top