ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbart22f07 |
|---|---|
| Clone Library Name | barley_pub |
>MRAW_HELMO (Q8GE08) S-adenosyl-methyltransferase mraW (EC 2.1.1.-) (Fragment)| Length = 312 Score = 33.1 bits (74), Expect = 0.16 Identities = 24/74 (32%), Positives = 32/74 (43%), Gaps = 3/74 (4%) Frame = -1 Query: 357 RQAHGEAAQVLQPKAEGAGIGVHSVEGKFVRDGDVLAEKG---PPASPRCSRSTKARLLV 187 ++A A L P A I HS+E + V++ KG PP P C KARL + Sbjct: 223 QEALPAALDALAPSGRLAVISFHSLEDRIVKNFFAEQAKGCTCPPDMPVCGCGKKARLKI 282 Query: 186 TGRGTILSDEIQSK 145 R I E + K Sbjct: 283 ITRKPITGSEEELK 296
>RPOA_LACLA (Q9CDY3) DNA-directed RNA polymerase alpha chain (EC 2.7.7.6) (RNAP| alpha subunit) (Transcriptase alpha chain) (RNA polymerase alpha subunit) Length = 312 Score = 30.0 bits (66), Expect = 1.4 Identities = 21/64 (32%), Positives = 30/64 (46%) Frame = -1 Query: 318 KAEGAGIGVHSVEGKFVRDGDVLAEKGPPASPRCSRSTKARLLVTGRGTILSDEIQSKAG 139 K +GA IG +V+ + V + P S K L +T GTI+SDE S + Sbjct: 153 KVDGAPIGTIAVDSIYTPVSKVNYQVEPARVGGDSSYDKLTLEITTNGTIVSDEALSLSA 212 Query: 138 KKMT 127 K +T Sbjct: 213 KILT 216
>NIFA_AZOBR (P30667) Nif-specific regulatory protein| Length = 625 Score = 30.0 bits (66), Expect = 1.4 Identities = 19/50 (38%), Positives = 24/50 (48%) Frame = +2 Query: 167 RIVPRPVTSRRAFVLREQRGEAGGPFSASTSPSRTNFPSTE*TPIPAPSA 316 R+VPRP+ R R G +G P A PSR P P P+P+A Sbjct: 521 RVVPRPLAGLR----RRPAGGSGPPDPACPCPSRAPLPPQ--APPPSPAA 564
>ICP0_BHV1K (P29836) Trans-acting transcriptional protein ICP0 (P135 protein)| (IER 2.9/ER2.6) Length = 676 Score = 30.0 bits (66), Expect = 1.4 Identities = 21/61 (34%), Positives = 26/61 (42%), Gaps = 6/61 (9%) Frame = -1 Query: 396 LPAVPHNRQVRRGR------QAHGEAAQVLQPKAEGAGIGVHSVEGKFVRDGDVLAEKGP 235 LPA P + R + G A + E AG GV S EG+ R +L E GP Sbjct: 397 LPAAPRAAPAAQARACSPEPREEGRGAGLGVAAGETAGWGVGSEEGRGERRAKLLGEAGP 456 Query: 234 P 232 P Sbjct: 457 P 457
>HSF8_LYCPE (P41153) Heat shock factor protein HSF8 (Heat shock transcription| factor 8) (HSTF 8) (Heat stress transcription factor) Length = 527 Score = 29.3 bits (64), Expect = 2.4 Identities = 14/44 (31%), Positives = 22/44 (50%) Frame = -1 Query: 384 PHNRQVRRGRQAHGEAAQVLQPKAEGAGIGVHSVEGKFVRDGDV 253 P + ++ +Q HG A Q +QP A +G GKF + +V Sbjct: 133 PAHGHAQQQQQPHGHAQQQMQPPGHSASVGACVEVGKFGLEEEV 176
>HSF8_LYCES (Q40152) Heat shock factor protein HSF8 (Heat shock transcription| factor 8) (HSTF 8) (Heat stress transcription factor) Length = 527 Score = 29.3 bits (64), Expect = 2.4 Identities = 14/44 (31%), Positives = 22/44 (50%) Frame = -1 Query: 384 PHNRQVRRGRQAHGEAAQVLQPKAEGAGIGVHSVEGKFVRDGDV 253 P + ++ +Q HG A Q +QP A +G GKF + +V Sbjct: 131 PAHGHAQQQQQPHGNAQQQMQPPGHSASVGACVEVGKFGLEEEV 174
>ITPK1_MOUSE (Q8BYN3) Inositol-tetrakisphosphate 1-kinase (EC 2.7.1.134)| (Inositol-triphosphate 5/6-kinase) (EC 2.7.1.-) (Inositol 1,3,4-trisphosphate 5/6-kinase) Length = 419 Score = 28.9 bits (63), Expect = 3.1 Identities = 18/50 (36%), Positives = 23/50 (46%) Frame = +2 Query: 218 QRGEAGGPFSASTSPSRTNFPSTE*TPIPAPSAFGWRTCAASPWACRPLR 367 Q GG + +P R N E PA S G RTC+ASP C ++ Sbjct: 321 QGQSTGGAATEEVAPLRHNRLLAE----PAGSLAGERTCSASPGCCGSMK 366
>GUN1_ACICE (P54583) Endoglucanase E1 precursor (EC 3.2.1.4)| (Endo-1,4-beta-glucanase E1) (Cellulase E1) (Endocellulase E1) Length = 562 Score = 28.5 bits (62), Expect = 4.0 Identities = 16/38 (42%), Positives = 19/38 (50%) Frame = +2 Query: 239 PFSASTSPSRTNFPSTE*TPIPAPSAFGWRTCAASPWA 352 P AS SPS PS +P P+PSA T +P A Sbjct: 398 PVGASASPSSQPSPSVSPSPSPSPSASRTPTPTPTPTA 435
>ADRM1_RAT (Q9JMB5) Adhesion-regulating molecule 1 precursor (110 kDa cell| membrane glycoprotein) (Gp110) Length = 407 Score = 28.5 bits (62), Expect = 4.0 Identities = 19/66 (28%), Positives = 28/66 (42%) Frame = -1 Query: 360 GRQAHGEAAQVLQPKAEGAGIGVHSVEGKFVRDGDVLAEKGPPASPRCSRSTKARLLVTG 181 G +H + Q++ P G G+ ++ G + +L GPPAS S S VT Sbjct: 161 GNMSHSQLMQLIGPAGLGGLGGLGALTGPGL--ASLLGSSGPPASSSSSSSRSQSAAVTP 218 Query: 180 RGTILS 163 T S Sbjct: 219 SSTTSS 224
>MURB_MYCPA (Q73SU8) UDP-N-acetylenolpyruvoylglucosamine reductase (EC| 1.1.1.158) (UDP-N-acetylmuramate dehydrogenase) Length = 372 Score = 28.5 bits (62), Expect = 4.0 Identities = 15/36 (41%), Positives = 21/36 (58%) Frame = -1 Query: 261 GDVLAEKGPPASPRCSRSTKARLLVTGRGTILSDEI 154 G + + G P +P C STK L +T RGT SD++ Sbjct: 308 GYPVPDPGGPEAP-CRLSTKHALALTNRGTARSDDV 342
>PI5PA_HUMAN (Q15735) Phosphatidylinositol 4,5-bisphosphate 5-phosphatase A (EC| 3.1.3.56) Length = 1006 Score = 28.1 bits (61), Expect = 5.3 Identities = 15/44 (34%), Positives = 24/44 (54%), Gaps = 2/44 (4%) Frame = +2 Query: 251 STSPSRTNFPSTE*TPIPAP--SAFGWRTCAASPWACRPLRTWR 376 ST P R P+ + PAP ++ T ++SPW+ +P TW+ Sbjct: 377 STGPGRCLSPNLQAQEAPAPVTTSSSTSTLSSSPWSAQP--TWK 418
>CCHCR_PONPY (Q8HZ58) Coiled-coil alpha-helical rod protein 1 (Alpha helical| coiled-coil rod protein) Length = 782 Score = 28.1 bits (61), Expect = 5.3 Identities = 17/46 (36%), Positives = 22/46 (47%) Frame = -1 Query: 381 HNRQVRRGRQAHGEAAQVLQPKAEGAGIGVHSVEGKFVRDGDVLAE 244 H Q+ QAH EA L KAEG + S+E + + LAE Sbjct: 175 HQEQLSSLTQAHEEALSSLTSKAEGLEKSLSSLETRRAGEAKELAE 220
>CCHCR_PANTR (Q8HZ60) Coiled-coil alpha-helical rod protein 1 (Alpha helical| coiled-coil rod protein) Length = 782 Score = 28.1 bits (61), Expect = 5.3 Identities = 17/46 (36%), Positives = 22/46 (47%) Frame = -1 Query: 381 HNRQVRRGRQAHGEAAQVLQPKAEGAGIGVHSVEGKFVRDGDVLAE 244 H Q+ QAH EA L KAEG + S+E + + LAE Sbjct: 175 HQEQLSSLTQAHEEALSSLTSKAEGLEKSLSSLETRRAGEAKELAE 220
>CCHCR_PANPA (Q8HZ57) Coiled-coil alpha-helical rod protein 1 (Alpha helical| coiled-coil rod protein) Length = 782 Score = 28.1 bits (61), Expect = 5.3 Identities = 17/46 (36%), Positives = 22/46 (47%) Frame = -1 Query: 381 HNRQVRRGRQAHGEAAQVLQPKAEGAGIGVHSVEGKFVRDGDVLAE 244 H Q+ QAH EA L KAEG + S+E + + LAE Sbjct: 175 HQEQLSSLTQAHEEALSSLTSKAEGLEKSLSSLETRRAGEAKELAE 220
>CCHCR_HUMAN (Q8TD31) Coiled-coil alpha-helical rod protein 1 (Alpha helical| coiled-coil rod protein) (Putative gene 8 protein) (Pg8) Length = 782 Score = 28.1 bits (61), Expect = 5.3 Identities = 17/46 (36%), Positives = 22/46 (47%) Frame = -1 Query: 381 HNRQVRRGRQAHGEAAQVLQPKAEGAGIGVHSVEGKFVRDGDVLAE 244 H Q+ QAH EA L KAEG + S+E + + LAE Sbjct: 175 HQEQLSSLTQAHEEALSSLTSKAEGLEKSLSSLETRRAGEAKELAE 220
>CCHCR_GORGO (Q8HZ59) Coiled-coil alpha-helical rod protein 1 (Alpha helical| coiled-coil rod protein) Length = 782 Score = 28.1 bits (61), Expect = 5.3 Identities = 17/46 (36%), Positives = 22/46 (47%) Frame = -1 Query: 381 HNRQVRRGRQAHGEAAQVLQPKAEGAGIGVHSVEGKFVRDGDVLAE 244 H Q+ QAH EA L KAEG + S+E + + LAE Sbjct: 175 HQEQLSSLTQAHKEALSSLTSKAEGLEKSLSSLETRRAGEAKELAE 220
>YYAE_BACSU (P37519) Hypothetical protein yyaE| Length = 667 Score = 28.1 bits (61), Expect = 5.3 Identities = 19/65 (29%), Positives = 31/65 (47%) Frame = -2 Query: 332 KFSNRRLRELGLEFTPLKESLYETVTCLQKKGHLPLPVVPVAQKRAYL*QDAGQFCLMKY 153 ++S + E+GL ++ E L++KGHLPLPV V +G+F Sbjct: 469 EYSTQEFLEMGLSSLEAEDVTLER---LKEKGHLPLPVKQVPWDDYQFLTPSGKFEFTSS 525 Query: 152 RAKQE 138 A+Q+ Sbjct: 526 LAEQK 530
>OTE_DROME (P20240) Otefin| Length = 424 Score = 28.1 bits (61), Expect = 5.3 Identities = 20/56 (35%), Positives = 27/56 (48%), Gaps = 1/56 (1%) Frame = +2 Query: 182 PVT-SRRAFVLREQRGEAGGPFSASTSPSRTNFPSTE*TPIPAPSAFGWRTCAASP 346 PVT S R +++ R GG S + SP +TN T PAP A A++P Sbjct: 28 PVTDSSRKVLVKRLRASIGGQASPAASPKKTN---RRETLAPAPGAPSAPAAASTP 80
>ICP0_BHV1J (P29128) Trans-acting transcriptional protein ICP0 (P135 protein)| (IER 2.9/ER2.6) Length = 676 Score = 28.1 bits (61), Expect = 5.3 Identities = 20/61 (32%), Positives = 25/61 (40%), Gaps = 6/61 (9%) Frame = -1 Query: 396 LPAVPHNRQVRRGR------QAHGEAAQVLQPKAEGAGIGVHSVEGKFVRDGDVLAEKGP 235 LPA P + R + G A + E AG G S EG+ R +L E GP Sbjct: 397 LPAAPRAAPAAQARACSPEPREEGRGAGLGVAAGETAGWGAGSEEGRGERRARLLGEAGP 456 Query: 234 P 232 P Sbjct: 457 P 457
>MDTA_PHOLL (Q7N3E3) Multidrug resistance protein mdtA precursor (Multidrug| transporter mdtA) Length = 401 Score = 27.7 bits (60), Expect = 6.9 Identities = 12/28 (42%), Positives = 18/28 (64%) Frame = -1 Query: 318 KAEGAGIGVHSVEGKFVRDGDVLAEKGP 235 + EG I +H EG+ ++ GD+LAE P Sbjct: 85 RVEGQLIALHFQEGQQIKQGDLLAEIDP 112
>SPEN_DROME (Q8SX83) Protein split ends| Length = 5560 Score = 27.7 bits (60), Expect = 6.9 Identities = 12/23 (52%), Positives = 16/23 (69%) Frame = +2 Query: 233 GGPFSASTSPSRTNFPSTE*TPI 301 GGP S +TSP+ N +T+ TPI Sbjct: 1592 GGPCSGNTSPALPNLAATKATPI 1614
>DPOL_THEHY (Q9HH05) DNA polymerase (EC 2.7.7.7) [Contains: Endonuclease| PI-ThyII (EC 3.1.-.-) (Thy pol-1 intein); Endonuclease PI-ThyI (EC 3.1.-.-) (Thy pol-2 intein)] (Fragment) Length = 1668 Score = 27.7 bits (60), Expect = 6.9 Identities = 17/41 (41%), Positives = 22/41 (53%) Frame = -1 Query: 285 VEGKFVRDGDVLAEKGPPASPRCSRSTKARLLVTGRGTILS 163 +EG F+ DGDV K R STK+ LLV G +L+ Sbjct: 834 IEGYFIGDGDVHPSK------RVRLSTKSELLVNGLVLLLN 868
>TYPH2_ARCFU (O28927) Putative thymidine phosphorylase 2 (EC 2.4.2.4) (TdRPase| 2) Length = 505 Score = 27.7 bits (60), Expect = 6.9 Identities = 12/24 (50%), Positives = 16/24 (66%) Frame = -1 Query: 321 PKAEGAGIGVHSVEGKFVRDGDVL 250 PK +GAG+ VH G+ V+ GD L Sbjct: 441 PKDKGAGVYVHKKRGEVVKVGDPL 464
>CH602_STRLI (O33658) 60 kDa chaperonin 2 (Protein Cpn60 2) (groEL2 protein)| Length = 476 Score = 27.7 bits (60), Expect = 6.9 Identities = 9/14 (64%), Positives = 11/14 (78%) Frame = +2 Query: 311 SAFGWRTCAASPWA 352 +A+ WR CA SPWA Sbjct: 461 AAWSWRRCATSPWA 474
>TYPH1_ARCFU (O28928) Putative thymidine phosphorylase 1 (EC 2.4.2.4) (TdRPase| 1) Length = 504 Score = 27.7 bits (60), Expect = 6.9 Identities = 12/24 (50%), Positives = 16/24 (66%) Frame = -1 Query: 321 PKAEGAGIGVHSVEGKFVRDGDVL 250 PK +GAG+ VH G+ V+ GD L Sbjct: 442 PKDKGAGVYVHKKRGEVVKVGDPL 465
>DFRA_MAIZE (P51108) Dihydroflavonol-4-reductase (EC 1.1.1.219) (DFR)| (Dihydrokaempferol 4-reductase) Length = 357 Score = 27.3 bits (59), Expect = 9.0 Identities = 16/62 (25%), Positives = 35/62 (56%), Gaps = 5/62 (8%) Frame = -2 Query: 395 FPQYHITAK---CEEDGKPMAKPHKFSNRRLRELGLEF--TPLKESLYETVTCLQKKGHL 231 +P+Y + + ++D +P+ +FS+++L++LG F L++ + Q+KG + Sbjct: 276 YPEYDVPQRFPGIQDDLQPV----RFSSKKLQDLGFTFRYKTLEDMFDAAIRTCQEKGLI 331 Query: 230 PL 225 PL Sbjct: 332 PL 333
>ADRM1_MOUSE (Q9JKV1) Adhesion-regulating molecule 1 precursor (110 kDa cell| membrane glycoprotein) (Gp110) (ARM-1) Length = 407 Score = 27.3 bits (59), Expect = 9.0 Identities = 17/59 (28%), Positives = 26/59 (44%) Frame = -1 Query: 360 GRQAHGEAAQVLQPKAEGAGIGVHSVEGKFVRDGDVLAEKGPPASPRCSRSTKARLLVT 184 G +H + Q++ P G G+ ++ G + +L GPPAS S S VT Sbjct: 161 GNMSHSQLMQLIGPAGLGGLGGLGALTGPGL--ASLLGSSGPPASSSSSSSRSQSAAVT 217
>PDE1_CAEEL (O18696) Probable 3',5'-cyclic phosphodiesterase pde-1 (EC| 3.1.4.17) Length = 664 Score = 27.3 bits (59), Expect = 9.0 Identities = 12/24 (50%), Positives = 14/24 (58%) Frame = -1 Query: 276 KFVRDGDVLAEKGPPASPRCSRST 205 +F R GD+ A G P SP C R T Sbjct: 501 EFFRQGDLEASMGLPYSPLCDRHT 524
>HIPL2_ARATH (Q94F08) HIPL2 protein precursor| Length = 696 Score = 27.3 bits (59), Expect = 9.0 Identities = 18/44 (40%), Positives = 26/44 (59%), Gaps = 3/44 (6%) Frame = +1 Query: 247 CKHVTVSYKLSFNGVNSNPSSLSL--RLENLCGFAMGLP-SSSH 369 C++ TV + + NG +S+PS+ + E F MGLP SSSH Sbjct: 327 CRYQTVVSEYTANGTSSSPSTAKIGKASEVRRIFTMGLPYSSSH 370
>TBC19_HUMAN (Q8N5T2) TBC1 domain family member 19| Length = 526 Score = 27.3 bits (59), Expect = 9.0 Identities = 17/61 (27%), Positives = 25/61 (40%), Gaps = 4/61 (6%) Frame = +2 Query: 5 SNPNDIIIIHYIKVVSTSYMLTI*LV*IHDSMLNLKNPDYIVIF----FPALLCISSDRI 172 S P D++ +K + L + + D L N DY +F + LLC S D Sbjct: 269 SQPEDVLYYEQLKTNVIQHDLLVDSLIYKDVKLTASNDDYYFVFEDYLYQVLLCFSRDTS 328 Query: 173 V 175 V Sbjct: 329 V 329
>S26A6_HUMAN (Q9BXS9) Solute carrier family 26 member 6 (Pendrin-like protein 1)| (Pendrin L1) Length = 759 Score = 27.3 bits (59), Expect = 9.0 Identities = 14/37 (37%), Positives = 19/37 (51%) Frame = +3 Query: 264 LVQTFLQRSELQSQLPQPSVGELVRLRHGLAVLFALG 374 LV L +LQ QLP P GEL+ L + + +G Sbjct: 277 LVVVKLLNDKLQQQLPMPIPGELLTLIGATGISYGMG 313
>MRAW_DECAR (Q47A96) S-adenosyl-methyltransferase mraW (EC 2.1.1.-)| Length = 308 Score = 27.3 bits (59), Expect = 9.0 Identities = 19/71 (26%), Positives = 37/71 (52%), Gaps = 4/71 (5%) Frame = -1 Query: 378 NRQVRRGRQAHGEAAQVLQPKAEGAGIGVHSVEGKFVRD---GDVLAEKGPPASP-RCSR 211 N+++R+ A +A ++L+P I HS+E + V++ +A+ P + P R + Sbjct: 212 NQELRQLEVALPQALELLKPGGRLVVISFHSLEDRIVKNFMRDQSIADAMPKSLPLRADQ 271 Query: 210 STKARLLVTGR 178 K +L + GR Sbjct: 272 LPKPKLRLVGR 282
>PSS_ECOLI (P23830) CDP-diacylglycerol--serine O-phosphatidyltransferase (EC| 2.7.8.8) (Phosphatidylserine synthase) Length = 451 Score = 27.3 bits (59), Expect = 9.0 Identities = 13/33 (39%), Positives = 18/33 (54%) Frame = -3 Query: 112 FKIQHGIVYLYKLNC*HVRSRYHFYVMNDDNVI 14 FKI + YLY++N SR +YV D V+ Sbjct: 314 FKIIGALPYLYEINLRRFLSRLQYYVNTDQLVV 346
>MRAW_BORPE (Q7VUP6) S-adenosyl-methyltransferase mraW (EC 2.1.1.-)| Length = 364 Score = 27.3 bits (59), Expect = 9.0 Identities = 20/78 (25%), Positives = 35/78 (44%), Gaps = 2/78 (2%) Frame = -1 Query: 378 NRQVRRGRQAHGEAAQVLQPKAEGAGIGVHSVEGKFVRDGDVLAEKGPPASPR--CSRST 205 NR++ +A A +L P A I HS+E + V+ A + A R S Sbjct: 234 NRELEELARALASALDLLGPGGRLAVISFHSLEDRMVKQCIAAAARPAAAHARLPLRESE 293 Query: 204 KARLLVTGRGTILSDEIQ 151 + LV G +++D+++ Sbjct: 294 LPQPLVRSLGKVVADDVE 311
>MRAW_BORPA (Q7W4A7) S-adenosyl-methyltransferase mraW (EC 2.1.1.-)| Length = 364 Score = 27.3 bits (59), Expect = 9.0 Identities = 20/78 (25%), Positives = 35/78 (44%), Gaps = 2/78 (2%) Frame = -1 Query: 378 NRQVRRGRQAHGEAAQVLQPKAEGAGIGVHSVEGKFVRDGDVLAEKGPPASPR--CSRST 205 NR++ +A A +L P A I HS+E + V+ A + A R S Sbjct: 234 NRELEELARALASALDLLGPGGRLAVISFHSLEDRMVKQCIAAAARPAAAHARLPLRESE 293 Query: 204 KARLLVTGRGTILSDEIQ 151 + LV G +++D+++ Sbjct: 294 LPQPLVRSLGKVVADDVE 311
>MRAW_BORBR (Q7WFR5) S-adenosyl-methyltransferase mraW (EC 2.1.1.-)| Length = 364 Score = 27.3 bits (59), Expect = 9.0 Identities = 20/78 (25%), Positives = 35/78 (44%), Gaps = 2/78 (2%) Frame = -1 Query: 378 NRQVRRGRQAHGEAAQVLQPKAEGAGIGVHSVEGKFVRDGDVLAEKGPPASPR--CSRST 205 NR++ +A A +L P A I HS+E + V+ A + A R S Sbjct: 234 NRELEELARALASALDLLGPGGRLAVISFHSLEDRMVKQCIAAAARPAAAHARLPLRESE 293 Query: 204 KARLLVTGRGTILSDEIQ 151 + LV G +++D+++ Sbjct: 294 LPQPLVRSLGKVVADDVE 311
>RL2_CLOPE (Q8XHS6) 50S ribosomal protein L2| Length = 277 Score = 27.3 bits (59), Expect = 9.0 Identities = 25/75 (33%), Positives = 35/75 (46%), Gaps = 1/75 (1%) Frame = +3 Query: 171 LSRVLLQVGALLCYGNNGERQVALFLQARHRLVQTFLQRSELQSQLPQPSVGELVRLRHG 350 L+ V L+VG + G + + LQ +H V TF+ ELQ+ G++VR Sbjct: 105 LAPVGLKVGDTVVSGPEADIKPGNALQLKHMPVGTFVHNIELQA----GKGGQMVRSAGT 160 Query: 351 LAVLFAL-GGYVVLR 392 A L A G Y LR Sbjct: 161 SAQLMAKEGNYATLR 175
>TIE2_BRARE (O73791) Tyrosine-protein kinase receptor Tie-2 precursor (EC| 2.7.10.1) Length = 1116 Score = 27.3 bits (59), Expect = 9.0 Identities = 25/79 (31%), Positives = 32/79 (40%), Gaps = 2/79 (2%) Frame = +2 Query: 95 SMLNLKNPDYIV--IFFPALLCISSDRIVPRPVTSRRAFVLREQRGEAGGPFSASTSPSR 268 S + L NPD +V + P+LLC+SSD V + R Q S Sbjct: 25 SDVTLVNPDPVVSPLTAPSLLCVSSDWSSGGSVLALGQEFPRPQ---------GSVLALG 75 Query: 269 TNFPSTE*TPIPAPSAFGW 325 FP TE P PA + W Sbjct: 76 QEFPHTEPRPHPAAATVTW 94 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 59,042,886 Number of Sequences: 219361 Number of extensions: 1174532 Number of successful extensions: 4188 Number of sequences better than 10.0: 38 Number of HSP's better than 10.0 without gapping: 3993 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 4173 length of database: 80,573,946 effective HSP length: 108 effective length of database: 56,882,958 effective search space used: 1365190992 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
