ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbart22f07
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1ref|XM_468343.1| Oryza sativa (japonica cultivar-group), mRNA 60 6e-06
2dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D... 56 9e-05
3dbj|AP005303.3| Oryza sativa (japonica cultivar-group) genomic D... 56 9e-05
4emb|AJ428493.1|OSA428493 Oryza sativa ccr gene for cinnamoyl CoA... 56 9e-05
5ref|XM_468316.1| Oryza sativa (japonica cultivar-group), mRNA 48 0.022
6dbj|AP004064.3| Oryza sativa (japonica cultivar-group) genomic D... 48 0.022
7dbj|AP003996.3| Oryza sativa (japonica cultivar-group) genomic D... 48 0.022
8dbj|AK064401.1| Oryza sativa (japonica cultivar-group) cDNA clon... 48 0.022
9ref|XM_482628.1| Oryza sativa (japonica cultivar-group), mRNA 46 0.086
10ref|XM_507587.1| PREDICTED Oryza sativa (japonica cultivar-group... 46 0.086
11ref|XM_507244.2| PREDICTED Oryza sativa (japonica cultivar-group... 46 0.086
12dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic D... 46 0.086
13dbj|AP004703.3| Oryza sativa (japonica cultivar-group) genomic D... 46 0.086
14dbj|AK105870.1| Oryza sativa (japonica cultivar-group) cDNA clon... 46 0.086
15dbj|AK105802.1| Oryza sativa (japonica cultivar-group) cDNA clon... 46 0.086
16dbj|AK072872.1| Oryza sativa (japonica cultivar-group) cDNA clon... 46 0.086
17gb|AC172242.3| Gallus gallus BAC clone CH261-162M6 from chromoso... 42 1.4
18gb|AY895166.1| Gallus gallus BAC bW108010 chemokine-like ligand ... 42 1.4
19gb|AC022355.5|AC022355 Arabidopsis thaliana chromosome 1 BAC F9N... 42 1.4
20gb|AC008047.3|AC008047 Genomic sequence for Arabidopsis thaliana... 42 1.4
21gb|AC172026.3| Gallus gallus BAC clone CH261-126J23 from chromos... 42 1.4
22emb|AJ532421.1|EGR532421 Euglena granulata partial 18S rRNA gene... 42 1.4
23gb|AF439804.1| Pasteurella multocida isolate P-4058 heparosan sy... 40 5.3
24gb|AF425591.1| Pasteurella multocida isolate P-5695 heparosan sy... 40 5.3
25gb|AC118676.6| Mus musculus chromosome 7, clone RP24-178N18, com... 40 5.3
26gb|AC145944.3| Gallus gallus chromosome UNK clone CH261-22N7, co... 40 5.3
27gb|AC127317.3| Mus musculus BAC clone RP23-227H18 from chromosom... 40 5.3
28ref|XM_747166.1| Aspergillus fumigatus Af293 hypothetical protei... 40 5.3
29gb|AC107482.2| Homo sapiens 3p BAC RP11-271J8 (Roswell Park Canc... 40 5.3
30gb|AC122040.4| Mus musculus BAC clone RP24-432L11 from chromosom... 40 5.3
31gb|AC145447.3| Gallus gallus clone TAM33-73C18, complete sequence 40 5.3
32emb|CR626927.1| Bacteroides fragilis NCTC 9343, complete genome 40 5.3
33emb|AL583924.1|MLEPRTN8 Mycobacterium leprae strain TN complete ... 40 5.3
34emb|AL008609.1|MLCB1788 Mycobacterium leprae cosmid B1788 40 5.3
35gb|AC074026.14| Staphylococcus aureus clone sabac-16, complete s... 40 5.3
36gb|CP000046.1| Staphylococcus aureus subsp. aureus COL, complete... 40 5.3
37emb|CR523529.1| Gallus gallus finished cDNA, clone ChEST526g7 40 5.3
38gb|CP000253.1| Staphylococcus aureus subsp. aureus NCTC 8325, co... 40 5.3
39gb|CP000255.1| Staphylococcus aureus subsp. aureus USA300, compl... 40 5.3
40emb|CR388962.1| Gallus gallus finished cDNA, clone ChEST759d12 40 5.3
41emb|CR338749.1| Gallus gallus finished cDNA, clone ChEST48o5 40 5.3
42gb|AF302465.1|AF302465 Pasteurella multocida P934 region 2 capsu... 40 5.3
43gb|AC096725.3| Homo sapiens BAC clone RP11-25L5 from 4, complete... 40 5.3
44gb|AC163699.4| Gallus gallus BAC clone CH261-138A17 from chromos... 40 5.3
45gb|AC152829.2| Ornithorhynchus anatinus BAC clone OABb-466A1 fro... 40 5.3
46dbj|AP006841.1| Bacteroides fragilis YCH46 DNA, complete genome 40 5.3
47gb|AC155913.5| Mus musculus 6 BAC RP24-402E22 (Roswell Park Canc... 40 5.3
48emb|BX546483.5| Mouse DNA sequence from clone RP24-121F2 on chro... 40 5.3
49gb|AF082667.1|AF082667 Gallus gallus class II cytokine receptor ... 40 5.3
50gb|AC107371.17| Mus musculus chromosome 7, clone RP24-66D2, comp... 40 5.3
51gb|AC172370.2| Gallus gallus BAC clone CH261-119J18 from chromos... 40 5.3
52gb|AC145975.3| Gallus gallus BAC clone CH261-4H14 from chromosom... 40 5.3
53gb|AC147719.1| Gallus gallus BAC clone CH261-22J12 from chromoso... 40 5.3
54gb|AC145935.3| Gallus gallus BAC clone CH261-42P15 from chromoso... 40 5.3
55gb|AC147440.4| Gallus gallus BAC clone CH261-49N7 from chromosom... 40 5.3
56gb|AC159212.3| Gallus gallus BAC clone CH261-173O18 from chromos... 40 5.3
57gb|AC160643.2| Gallus gallus BAC clone CH261-123L21 from chromos... 40 5.3
58gb|AC118263.8| Mus musculus chromosome 1, clone RP24-502N12, com... 40 5.3 
>ref|XM_468343.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1014

 Score = 60.0 bits (30), Expect = 6e-06
 Identities = 72/86 (83%)
 Strand = Plus / Minus

                                                                       
Query: 286 ggagtgaactccaatcccagctccctcagccttcggttggagaacttgtgcggcttcgcc 345
           |||||||| ||||| ||||  ||| | |||||  |||| |||||||||| ||||||||||
Sbjct: 920 ggagtgaattccaaccccaaatccttgagcctctggttcgagaacttgtacggcttcgcc 861

                                     
Query: 346 atgggcttgccgtcctcttcgcactt 371
           || ||||| ||||| ||||| |||||
Sbjct: 860 atcggcttcccgtcatcttcacactt 835
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>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
                sequence
          Length = 35954743

 Score = 56.0 bits (28), Expect = 9e-05
 Identities = 67/80 (83%)
 Strand = Plus / Minus

                                                                            
Query: 286      ggagtgaactccaatcccagctccctcagccttcggttggagaacttgtgcggcttcgcc 345
                |||||||| ||||| ||||  ||| | |||||  |||| |||||||||| ||||||||||
Sbjct: 34762371 ggagtgaattccaaccccaaatccttgagcctctggttcgagaacttgtacggcttcgcc 34762312

                                    
Query: 346      atgggcttgccgtcctcttc 365
                || ||||| ||||| |||||
Sbjct: 34762311 atcggcttcccgtcatcttc 34762292



 Score = 48.1 bits (24), Expect = 0.022
 Identities = 57/68 (83%)
 Strand = Plus / Plus

                                                                            
Query: 286      ggagtgaactccaatcccagctccctcagccttcggttggagaacttgtgcggcttcgcc 345
                |||||||||||||| ||||  ||| | |||||  |||| |||||||| | ||||||||||
Sbjct: 34583166 ggagtgaactccaaacccaaatccttgagcctctggttcgagaacttatacggcttcgcc 34583225

                        
Query: 346      atgggctt 353
                || |||||
Sbjct: 34583226 atcggctt 34583233
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>dbj|AP005303.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC
             clone:P0016F11
          Length = 134907

 Score = 56.0 bits (28), Expect = 9e-05
 Identities = 67/80 (83%)
 Strand = Plus / Minus

                                                                         
Query: 286   ggagtgaactccaatcccagctccctcagccttcggttggagaacttgtgcggcttcgcc 345
             |||||||| ||||| ||||  ||| | |||||  |||| |||||||||| ||||||||||
Sbjct: 80219 ggagtgaattccaaccccaaatccttgagcctctggttcgagaacttgtacggcttcgcc 80160

                                 
Query: 346   atgggcttgccgtcctcttc 365
             || ||||| ||||| |||||
Sbjct: 80159 atcggcttcccgtcatcttc 80140
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>emb|AJ428493.1|OSA428493 Oryza sativa ccr gene for cinnamoyl CoA reductase, exons 1-5
          Length = 3045

 Score = 56.0 bits (28), Expect = 9e-05
 Identities = 67/80 (83%)
 Strand = Plus / Minus

                                                                        
Query: 286  ggagtgaactccaatcccagctccctcagccttcggttggagaacttgtgcggcttcgcc 345
            |||||||| ||||| ||||  ||| | |||||  |||| |||||||||| ||||||||||
Sbjct: 2396 ggagtgaattccaaccccaaatccttgagcctctggttcgagaacttgtacggcttcgcc 2337

                                
Query: 346  atgggcttgccgtcctcttc 365
            || ||||| ||||| |||||
Sbjct: 2336 atcggcttcccgtcatcttc 2317
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>ref|XM_468316.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1428

 Score = 48.1 bits (24), Expect = 0.022
 Identities = 57/68 (83%)
 Strand = Plus / Minus

                                                                        
Query: 286  ggagtgaactccaatcccagctccctcagccttcggttggagaacttgtgcggcttcgcc 345
            |||||||||||||| ||||  ||| | |||||  |||| |||||||| | ||||||||||
Sbjct: 1045 ggagtgaactccaaacccaaatccttgagcctctggttcgagaacttatacggcttcgcc 986

                    
Query: 346  atgggctt 353
            || |||||
Sbjct: 985  atcggctt 978
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>dbj|AP004064.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
             clone:OJ1520_C09
          Length = 145553

 Score = 48.1 bits (24), Expect = 0.022
 Identities = 57/68 (83%)
 Strand = Plus / Plus

                                                                         
Query: 286   ggagtgaactccaatcccagctccctcagccttcggttggagaacttgtgcggcttcgcc 345
             |||||||||||||| ||||  ||| | |||||  |||| |||||||| | ||||||||||
Sbjct: 94106 ggagtgaactccaaacccaaatccttgagcctctggttcgagaacttatacggcttcgcc 94165

                     
Query: 346   atgggctt 353
             || |||||
Sbjct: 94166 atcggctt 94173
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>dbj|AP003996.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
             clone:OJ1112_G06
          Length = 122580

 Score = 48.1 bits (24), Expect = 0.022
 Identities = 57/68 (83%)
 Strand = Plus / Plus

                                                                         
Query: 286   ggagtgaactccaatcccagctccctcagccttcggttggagaacttgtgcggcttcgcc 345
             |||||||||||||| ||||  ||| | |||||  |||| |||||||| | ||||||||||
Sbjct: 49781 ggagtgaactccaaacccaaatccttgagcctctggttcgagaacttatacggcttcgcc 49840

                     
Query: 346   atgggctt 353
             || |||||
Sbjct: 49841 atcggctt 49848
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>dbj|AK064401.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-108-H04, full
            insert sequence
          Length = 1428

 Score = 48.1 bits (24), Expect = 0.022
 Identities = 57/68 (83%)
 Strand = Plus / Minus

                                                                        
Query: 286  ggagtgaactccaatcccagctccctcagccttcggttggagaacttgtgcggcttcgcc 345
            |||||||||||||| ||||  ||| | |||||  |||| |||||||| | ||||||||||
Sbjct: 1045 ggagtgaactccaaacccaaatccttgagcctctggttcgagaacttatacggcttcgcc 986

                    
Query: 346  atgggctt 353
            || |||||
Sbjct: 985  atcggctt 978
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>ref|XM_482628.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1423

 Score = 46.1 bits (23), Expect = 0.086
 Identities = 38/43 (88%)
 Strand = Plus / Minus

                                                       
Query: 229  ggcaggtggccctttttctgcaagcacgtcaccgtctcgtaca 271
            |||||||||||||| | ||| | |||| |||||||||||||||
Sbjct: 1185 ggcaggtggcccttctcctggaggcacttcaccgtctcgtaca 1143
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>ref|XM_507587.1| PREDICTED Oryza sativa (japonica cultivar-group), P0528B09.35-1 mRNA
          Length = 1439

 Score = 46.1 bits (23), Expect = 0.086
 Identities = 38/43 (88%)
 Strand = Plus / Minus

                                                       
Query: 229  ggcaggtggccctttttctgcaagcacgtcaccgtctcgtaca 271
            |||||||||||||| | ||| | |||| |||||||||||||||
Sbjct: 1186 ggcaggtggcccttctcctggaggcacttcaccgtctcgtaca 1144
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>ref|XM_507244.2| PREDICTED Oryza sativa (japonica cultivar-group), P0528B09.35-1 mRNA
          Length = 1441

 Score = 46.1 bits (23), Expect = 0.086
 Identities = 38/43 (88%)
 Strand = Plus / Minus

                                                       
Query: 229  ggcaggtggccctttttctgcaagcacgtcaccgtctcgtaca 271
            |||||||||||||| | ||| | |||| |||||||||||||||
Sbjct: 1186 ggcaggtggcccttctcctggaggcacttcaccgtctcgtaca 1144
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>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete
                sequence
          Length = 28434780

 Score = 46.1 bits (23), Expect = 0.086
 Identities = 38/43 (88%)
 Strand = Plus / Plus

                                                           
Query: 229      ggcaggtggccctttttctgcaagcacgtcaccgtctcgtaca 271
                |||||||||||||| | ||| | |||| |||||||||||||||
Sbjct: 21499487 ggcaggtggcccttctcctggaggcacttcaccgtctcgtaca 21499529
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>dbj|AP004703.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC
              clone:P0528B09
          Length = 156897

 Score = 46.1 bits (23), Expect = 0.086
 Identities = 38/43 (88%)
 Strand = Plus / Plus

                                                         
Query: 229    ggcaggtggccctttttctgcaagcacgtcaccgtctcgtaca 271
              |||||||||||||| | ||| | |||| |||||||||||||||
Sbjct: 103482 ggcaggtggcccttctcctggaggcacttcaccgtctcgtaca 103524
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>dbj|AK105870.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-204-A12, full
            insert sequence
          Length = 1439

 Score = 46.1 bits (23), Expect = 0.086
 Identities = 38/43 (88%)
 Strand = Plus / Minus

                                                       
Query: 229  ggcaggtggccctttttctgcaagcacgtcaccgtctcgtaca 271
            |||||||||||||| | ||| | |||| |||||||||||||||
Sbjct: 1186 ggcaggtggcccttctcctggaggcacttcaccgtctcgtaca 1144
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>dbj|AK105802.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-203-A12, full
            insert sequence
          Length = 1423

 Score = 46.1 bits (23), Expect = 0.086
 Identities = 38/43 (88%)
 Strand = Plus / Minus

                                                       
Query: 229  ggcaggtggccctttttctgcaagcacgtcaccgtctcgtaca 271
            |||||||||||||| | ||| | |||| |||||||||||||||
Sbjct: 1185 ggcaggtggcccttctcctggaggcacttcaccgtctcgtaca 1143
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>dbj|AK072872.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023143B20, full
            insert sequence
          Length = 1441

 Score = 46.1 bits (23), Expect = 0.086
 Identities = 38/43 (88%)
 Strand = Plus / Minus

                                                       
Query: 229  ggcaggtggccctttttctgcaagcacgtcaccgtctcgtaca 271
            |||||||||||||| | ||| | |||| |||||||||||||||
Sbjct: 1186 ggcaggtggcccttctcctggaggcacttcaccgtctcgtaca 1144
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>gb|AC172242.3| Gallus gallus BAC clone CH261-162M6 from chromosome ul, complete sequence
          Length = 252782

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 296    ccaatcccagctccctcagcc 316
              |||||||||||||||||||||
Sbjct: 167674 ccaatcccagctccctcagcc 167654
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>gb|AY895166.1| Gallus gallus BAC bW108010 chemokine-like ligand 1, SCYA4, chemokine
             K203, and chemokine ah294 genes, complete cds
          Length = 112034

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 299   atcccagctccctcagccttc 319
             |||||||||||||||||||||
Sbjct: 62444 atcccagctccctcagccttc 62464
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>gb|AC022355.5|AC022355 Arabidopsis thaliana chromosome 1 BAC F9N12 genomic sequence,
            complete sequence
          Length = 67712

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                     
Query: 2    atttcgaacccaaatgacattatca 26
            |||| ||||||||||||||||||||
Sbjct: 9434 atttagaacccaaatgacattatca 9410
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>gb|AC008047.3|AC008047 Genomic sequence for Arabidopsis thaliana BAC F2K11 from chromosome I,
             complete sequence
          Length = 100867

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 2     atttcgaacccaaatgacattatca 26
             |||| ||||||||||||||||||||
Sbjct: 97438 atttagaacccaaatgacattatca 97414
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>gb|AC172026.3| Gallus gallus BAC clone CH261-126J23 from chromosome ul, complete
              sequence
          Length = 179661

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 135    tctttcctgctttgctctgta 155
              |||||||||||||||||||||
Sbjct: 141804 tctttcctgctttgctctgta 141784
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>emb|AJ532421.1|EGR532421 Euglena granulata partial 18S rRNA gene, strain SAG 1224-8c
          Length = 2410

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 133 cttctttcctgctttgctctg 153
           |||||||||||||||||||||
Sbjct: 248 cttctttcctgctttgctctg 228
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>gb|AF439804.1| Pasteurella multocida isolate P-4058 heparosan synthase A (hssA)
            gene, complete cds
          Length = 1854

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 156  tttcatcagacagaattgtc 175
            ||||||||||||||||||||
Sbjct: 1457 tttcatcagacagaattgtc 1476
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>gb|AF425591.1| Pasteurella multocida isolate P-5695 heparosan synthase A (hssA)
            gene, complete cds
          Length = 1854

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 156  tttcatcagacagaattgtc 175
            ||||||||||||||||||||
Sbjct: 1457 tttcatcagacagaattgtc 1476
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>gb|AC118676.6| Mus musculus chromosome 7, clone RP24-178N18, complete sequence
          Length = 149930

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 135    tctttcctgctttgctctgt 154
              ||||||||||||||||||||
Sbjct: 107299 tctttcctgctttgctctgt 107318
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>gb|AC145944.3| Gallus gallus chromosome UNK clone CH261-22N7, complete sequence
          Length = 215147

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 297   caatcccagctccctcagcc 316
             ||||||||||||||||||||
Sbjct: 15695 caatcccagctccctcagcc 15676
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>gb|AC127317.3| Mus musculus BAC clone RP23-227H18 from chromosome 7, complete sequence
          Length = 180376

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 105   atcttaaaaatcctgattacatcg 128
             ||||||||||||||| ||||||||
Sbjct: 65673 atcttaaaaatcctgcttacatcg 65650
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>ref|XM_747166.1| Aspergillus fumigatus Af293 hypothetical protein (Afu1g08920)
           partial mRNA
          Length = 2958

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 358 tcctcttcgcacttggcggt 377
           ||||||||||||||||||||
Sbjct: 473 tcctcttcgcacttggcggt 454
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>gb|AC107482.2| Homo sapiens 3p BAC RP11-271J8 (Roswell Park Cancer Institute Human BAC
              Library) complete sequence
          Length = 180631

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 140    cctgctttgctctgtatttc 159
              ||||||||||||||||||||
Sbjct: 142911 cctgctttgctctgtatttc 142892
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>gb|AC122040.4| Mus musculus BAC clone RP24-432L11 from chromosome 1, complete sequence
          Length = 144699

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 128    gtcatcttctttcctgcttt 147
              ||||||||||||||||||||
Sbjct: 122366 gtcatcttctttcctgcttt 122347
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>gb|AC145447.3| Gallus gallus clone TAM33-73C18, complete sequence
          Length = 28009

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 297   caatcccagctccctcagcc 316
             ||||||||||||||||||||
Sbjct: 18473 caatcccagctccctcagcc 18454
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>emb|CR626927.1| Bacteroides fragilis NCTC 9343, complete genome
          Length = 5205140

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 121     ttacatcgtcatcttctttc 140
               ||||||||||||||||||||
Sbjct: 3859484 ttacatcgtcatcttctttc 3859465
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>emb|AL583924.1|MLEPRTN8 Mycobacterium leprae strain TN complete genome; segment 8/10
          Length = 342300

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 320    ggttggagaacttgtgcggc 339
              ||||||||||||||||||||
Sbjct: 104302 ggttggagaacttgtgcggc 104283
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>emb|AL008609.1|MLCB1788 Mycobacterium leprae cosmid B1788
          Length = 39228

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 320  ggttggagaacttgtgcggc 339
            ||||||||||||||||||||
Sbjct: 8904 ggttggagaacttgtgcggc 8885
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>gb|AC074026.14| Staphylococcus aureus clone sabac-16, complete sequence
          Length = 52695

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 14    aatgacattatcatcattcattac 37
             |||||||||||| |||||||||||
Sbjct: 50996 aatgacattatcttcattcattac 51019
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>gb|CP000046.1| Staphylococcus aureus subsp. aureus COL, complete genome
          Length = 2809422

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                       
Query: 14      aatgacattatcatcattcattac 37
               |||||||||||| |||||||||||
Sbjct: 2670408 aatgacattatcttcattcattac 2670431
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>emb|CR523529.1| Gallus gallus finished cDNA, clone ChEST526g7
          Length = 1664

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 300  tcccagctccctcagccttc 319
            ||||||||||||||||||||
Sbjct: 1061 tcccagctccctcagccttc 1080
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>gb|CP000253.1| Staphylococcus aureus subsp. aureus NCTC 8325, complete genome
          Length = 2821361

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                       
Query: 14      aatgacattatcatcattcattac 37
               |||||||||||| |||||||||||
Sbjct: 2682340 aatgacattatcttcattcattac 2682363
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>gb|CP000255.1| Staphylococcus aureus subsp. aureus USA300, complete genome
          Length = 2872769

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                       
Query: 14      aatgacattatcatcattcattac 37
               |||||||||||| |||||||||||
Sbjct: 2733712 aatgacattatcttcattcattac 2733735
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>emb|CR388962.1| Gallus gallus finished cDNA, clone ChEST759d12
          Length = 1185

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 300 tcccagctccctcagccttc 319
           ||||||||||||||||||||
Sbjct: 582 tcccagctccctcagccttc 601
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>emb|CR338749.1| Gallus gallus finished cDNA, clone ChEST48o5
          Length = 1238

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 297 caatcccagctccctcagcc 316
           ||||||||||||||||||||
Sbjct: 674 caatcccagctccctcagcc 693
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>gb|AF302465.1|AF302465 Pasteurella multocida P934 region 2 capsule biosynthesis gene
            cluster, partial sequence
          Length = 7569

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 156  tttcatcagacagaattgtc 175
            ||||||||||||||||||||
Sbjct: 4348 tttcatcagacagaattgtc 4367
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>gb|AC096725.3| Homo sapiens BAC clone RP11-25L5 from 4, complete sequence
          Length = 182627

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 10     cccaaatgacattatcatca 29
              ||||||||||||||||||||
Sbjct: 166331 cccaaatgacattatcatca 166312
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>gb|AC163699.4| Gallus gallus BAC clone CH261-138A17 from chromosome unknown, complete
              sequence
          Length = 240555

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 297    caatcccagctccctcagcc 316
              ||||||||||||||||||||
Sbjct: 118166 caatcccagctccctcagcc 118147
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>gb|AC152829.2| Ornithorhynchus anatinus BAC clone OABb-466A1 from chromosome unknown,
             complete sequence
          Length = 160523

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 286   ggagtgaactccaatcccag 305
             ||||||||||||||||||||
Sbjct: 62954 ggagtgaactccaatcccag 62935
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>dbj|AP006841.1| Bacteroides fragilis YCH46 DNA, complete genome
          Length = 5277274

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 121     ttacatcgtcatcttctttc 140
               ||||||||||||||||||||
Sbjct: 3952575 ttacatcgtcatcttctttc 3952556
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>gb|AC155913.5| Mus musculus 6 BAC RP24-402E22 (Roswell Park Cancer Institute (C57BL/6J
             Male) Mouse BAC Library) complete sequence
          Length = 162332

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 98    atgctgaatcttaaaaatcc 117
             ||||||||||||||||||||
Sbjct: 38354 atgctgaatcttaaaaatcc 38373
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>emb|BX546483.5| Mouse DNA sequence from clone RP24-121F2 on chromosome X, complete
             sequence
          Length = 74439

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 145   tttgctctgtatttcatcag 164
             ||||||||||||||||||||
Sbjct: 35616 tttgctctgtatttcatcag 35635
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>gb|AF082667.1|AF082667 Gallus gallus class II cytokine receptor gene cluster, complete
             sequence
          Length = 46304

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 297   caatcccagctccctcagcc 316
             ||||||||||||||||||||
Sbjct: 31636 caatcccagctccctcagcc 31617
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>gb|AC107371.17| Mus musculus chromosome 7, clone RP24-66D2, complete sequence
          Length = 214373

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 135   tctttcctgctttgctctgt 154
             ||||||||||||||||||||
Sbjct: 48675 tctttcctgctttgctctgt 48694
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>gb|AC172370.2| Gallus gallus BAC clone CH261-119J18 from chromosome ul, complete
             sequence
          Length = 260878

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 297   caatcccagctccctcagcc 316
             ||||||||||||||||||||
Sbjct: 73463 caatcccagctccctcagcc 73444
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>gb|AC145975.3| Gallus gallus BAC clone CH261-4H14 from chromosome unknown, complete
             sequence
          Length = 185379

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 297   caatcccagctccctcagcc 316
             ||||||||||||||||||||
Sbjct: 17500 caatcccagctccctcagcc 17519
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>gb|AC147719.1| Gallus gallus BAC clone CH261-22J12 from chromosome unknown, complete
              sequence
          Length = 192198

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 297    caatcccagctccctcagcc 316
              ||||||||||||||||||||
Sbjct: 111209 caatcccagctccctcagcc 111190
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>gb|AC145935.3| Gallus gallus BAC clone CH261-42P15 from chromosome unknown, complete
             sequence
          Length = 194387

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 297   caatcccagctccctcagcc 316
             ||||||||||||||||||||
Sbjct: 16441 caatcccagctccctcagcc 16422
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>gb|AC147440.4| Gallus gallus BAC clone CH261-49N7 from chromosome unknown, complete
              sequence
          Length = 192621

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 297    caatcccagctccctcagcc 316
              ||||||||||||||||||||
Sbjct: 128919 caatcccagctccctcagcc 128900
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>gb|AC159212.3| Gallus gallus BAC clone CH261-173O18 from chromosome unknown, complete
             sequence
          Length = 236827

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 297   caatcccagctccctcagcc 316
             ||||||||||||||||||||
Sbjct: 39733 caatcccagctccctcagcc 39752
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>gb|AC160643.2| Gallus gallus BAC clone CH261-123L21 from chromosome unknown, complete
              sequence
          Length = 267345

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 297    caatcccagctccctcagcc 316
              ||||||||||||||||||||
Sbjct: 238684 caatcccagctccctcagcc 238703
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>gb|AC118263.8| Mus musculus chromosome 1, clone RP24-502N12, complete sequence
          Length = 203126

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 128    gtcatcttctttcctgcttt 147
              ||||||||||||||||||||
Sbjct: 168344 gtcatcttctttcctgcttt 168363


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,568,870
Number of Sequences: 3902068
Number of extensions: 3568870
Number of successful extensions: 66021
Number of sequences better than 10.0: 58
Number of HSP's better than 10.0 without gapping: 58
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 65766
Number of HSP's gapped (non-prelim): 255
length of query: 399
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 377
effective length of database: 17,147,199,772
effective search space: 6464494314044
effective search space used: 6464494314044
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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