ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbart22f03
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1ref|NM_196176.1| Oryza sativa (japonica cultivar-group) putative... 188 1e-44
2gb|AC114474.2| Genomic sequence for Oryza sativa, Nipponbare str... 188 1e-44
3gb|AC092748.2| Genomic sequence for Oryza sativa, Nipponbare str... 188 1e-44
4dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic D... 188 1e-44
5gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome... 188 1e-44
6ref|NM_191411.1| Oryza sativa (japonica cultivar-group), predic... 165 2e-37
7dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 165 2e-37
8dbj|AP003106.1| Oryza sativa (japonica cultivar-group) genomic D... 165 2e-37
9dbj|AB162137.1| Oryza sativa (japonica cultivar-group) TDC gene ... 165 2e-37
10dbj|AK065830.1| Oryza sativa (japonica cultivar-group) cDNA clon... 165 2e-37
11gb|AY111785.1| Zea mays CL244_1 mRNA sequence 101 2e-18
12ref|XM_475687.1| Oryza sativa (japonica cultivar-group), predic... 68 3e-08
13gb|AC108873.2| Oryza sativa (japonica cultivar-group) chromosome... 68 3e-08
14dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic D... 68 3e-08
15ref|NM_196380.1| Oryza sativa (japonica cultivar-group) putative... 50 0.007
16gb|AC021891.6| Oryza sativa (japonica cultivar-group) chromosome... 50 0.007
17dbj|AB028848.1| Tenebrio molitor mRNA for dopa decarboxylase, co... 44 0.42
18ref|NM_012398.1| Homo sapiens phosphatidylinositol-4-phosphate 5... 40 6.6
19ref|XM_752556.1| Ustilago maydis 521 hypothetical protein (UM015... 40 6.6
20gb|BC004149.2| Homo sapiens phosphatidylinositol-4-phosphate 5-k... 40 6.6
21emb|AL138712.19| Human DNA sequence from clone RP11-502P18 on ch... 40 6.6
22emb|BX640442.1| Bordetella bronchiseptica strain RB50, complete ... 40 6.6
23emb|BX640430.1| Bordetella parapertussis strain 12822, complete ... 40 6.6
24emb|BX640417.1| Bordetella pertussis strain Tohama I, complete g... 40 6.6
25gb|AE005705.1| Caulobacter crescentus CB15 section 31 of 359 of ... 40 6.6
26gb|CP000250.1| Rhodopseudomonas palustris HaA2, complete genome 40 6.6
27dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic D... 40 6.6
28emb|BX000696.19| Zebrafish DNA sequence from clone CH211-107E16 ... 40 6.6
29dbj|AK106536.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 6.6
30dbj|AK073095.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 6.6
31gb|AC005542.1|AC005542 Homo sapiens chromosome 19, cosmid R32516... 40 6.6
32gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome... 40 6.6
33emb|AL928774.3|CNS08CC4 Oryza sativa chromosome 12, . BAC OSJNBa... 40 6.6
34dbj|AB011161.1| Homo sapiens mRNA for KIAA0589 protein, partial cds 40 6.6

>ref|NM_196176.1| Oryza sativa (japonica cultivar-group) putative Tyrosine/DOPA
            decarboxylase 2 (OSJNBa0032N04.8), mRNA
          Length = 1581

 Score =  188 bits (95), Expect = 1e-44
 Identities = 158/179 (88%)
 Strand = Plus / Minus

                                                                        
Query: 207  agcccgatcctggaccaccttccatgcatcagcgacgtggtgctcctccgtgagcgtgct 266
            ||||||||||||||| |||||||| || ||   ||||||| ||||||| |||||||||||
Sbjct: 1545 agcccgatcctggacaaccttccaggcttcccggacgtggcgctcctcggtgagcgtgct 1486

                                                                        
Query: 267  cccgacggcgcacctgagcatgtagatgccacccacgttggcggagctcatgtacgggcc 326
             ||||||||||||||||||||||| | ||| || || |||||||||||||||||||| ||
Sbjct: 1485 gccgacggcgcacctgagcatgtacacgccgccgacattggcggagctcatgtacggtcc 1426

                                                                       
Query: 327  cgagccgaccgcgttcacctcctcgaggaggccccggttgagctcgttggccgtcttct 385
            ||||| | |||||||||||||||||||||| | || |||||||||||| ||||||||||
Sbjct: 1425 cgagctggccgcgttcacctcctcgaggagccgcctgttgagctcgttcgccgtcttct 1367



 Score =  113 bits (57), Expect = 6e-22
 Identities = 78/85 (91%)
 Strand = Plus / Minus

                                                                        
Query: 406  gaccggagcctgaagcacaccagcgcgaactgcctctccgtcaccacctcgaacctctcg 465
            |||||||||| ||||||||||||||||||| |||||  ||||||||||||||||||| ||
Sbjct: 1358 gaccggagccggaagcacaccagcgcgaaccgcctcggcgtcaccacctcgaacctcgcg 1299

                                     
Query: 466  tcggccctcaccatgtcctcgaacg 490
            |||||||| |||||| |||||||||
Sbjct: 1298 tcggccctgaccatgccctcgaacg 1274



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>gb|AC114474.2| Genomic sequence for Oryza sativa, Nipponbare strain, clone
             OSJNBa0032N04, from chromosome 10, complete sequence
          Length = 159445

 Score =  188 bits (95), Expect = 1e-44
 Identities = 158/179 (88%)
 Strand = Plus / Plus

                                                                         
Query: 207   agcccgatcctggaccaccttccatgcatcagcgacgtggtgctcctccgtgagcgtgct 266
             ||||||||||||||| |||||||| || ||   ||||||| ||||||| |||||||||||
Sbjct: 62170 agcccgatcctggacaaccttccaggcttcccggacgtggcgctcctcggtgagcgtgct 62229

                                                                         
Query: 267   cccgacggcgcacctgagcatgtagatgccacccacgttggcggagctcatgtacgggcc 326
              ||||||||||||||||||||||| | ||| || || |||||||||||||||||||| ||
Sbjct: 62230 gccgacggcgcacctgagcatgtacacgccgccgacattggcggagctcatgtacggtcc 62289

                                                                        
Query: 327   cgagccgaccgcgttcacctcctcgaggaggccccggttgagctcgttggccgtcttct 385
             ||||| | |||||||||||||||||||||| | || |||||||||||| ||||||||||
Sbjct: 62290 cgagctggccgcgttcacctcctcgaggagccgcctgttgagctcgttcgccgtcttct 62348



 Score =  113 bits (57), Expect = 6e-22
 Identities = 78/85 (91%)
 Strand = Plus / Plus

                                                                         
Query: 406   gaccggagcctgaagcacaccagcgcgaactgcctctccgtcaccacctcgaacctctcg 465
             |||||||||| ||||||||||||||||||| |||||  ||||||||||||||||||| ||
Sbjct: 62357 gaccggagccggaagcacaccagcgcgaaccgcctcggcgtcaccacctcgaacctcgcg 62416

                                      
Query: 466   tcggccctcaccatgtcctcgaacg 490
             |||||||| |||||| |||||||||
Sbjct: 62417 tcggccctgaccatgccctcgaacg 62441



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>gb|AC092748.2| Genomic sequence for Oryza sativa, Nipponbare strain, clone
              OSJNBa0019N10, from chromosome 10, complete sequence
          Length = 192267

 Score =  188 bits (95), Expect = 1e-44
 Identities = 158/179 (88%)
 Strand = Plus / Minus

                                                                          
Query: 207    agcccgatcctggaccaccttccatgcatcagcgacgtggtgctcctccgtgagcgtgct 266
              ||||||||||||||| |||||||| || ||   ||||||| ||||||| |||||||||||
Sbjct: 170210 agcccgatcctggacaaccttccaggcttcccggacgtggcgctcctcggtgagcgtgct 170151

                                                                          
Query: 267    cccgacggcgcacctgagcatgtagatgccacccacgttggcggagctcatgtacgggcc 326
               ||||||||||||||||||||||| | ||| || || |||||||||||||||||||| ||
Sbjct: 170150 gccgacggcgcacctgagcatgtacacgccgccgacattggcggagctcatgtacggtcc 170091

                                                                         
Query: 327    cgagccgaccgcgttcacctcctcgaggaggccccggttgagctcgttggccgtcttct 385
              ||||| | |||||||||||||||||||||| | || |||||||||||| ||||||||||
Sbjct: 170090 cgagctggccgcgttcacctcctcgaggagccgcctgttgagctcgttcgccgtcttct 170032



 Score =  113 bits (57), Expect = 6e-22
 Identities = 78/85 (91%)
 Strand = Plus / Minus

                                                                          
Query: 406    gaccggagcctgaagcacaccagcgcgaactgcctctccgtcaccacctcgaacctctcg 465
              |||||||||| ||||||||||||||||||| |||||  ||||||||||||||||||| ||
Sbjct: 170023 gaccggagccggaagcacaccagcgcgaaccgcctcggcgtcaccacctcgaacctcgcg 169964

                                       
Query: 466    tcggccctcaccatgtcctcgaacg 490
              |||||||| |||||| |||||||||
Sbjct: 169963 tcggccctgaccatgccctcgaacg 169939



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>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete
                sequence
          Length = 22685906

 Score =  188 bits (95), Expect = 1e-44
 Identities = 158/179 (88%)
 Strand = Plus / Plus

                                                                            
Query: 207      agcccgatcctggaccaccttccatgcatcagcgacgtggtgctcctccgtgagcgtgct 266
                ||||||||||||||| |||||||| || ||   ||||||| ||||||| |||||||||||
Sbjct: 11744109 agcccgatcctggacaaccttccaggcttcccggacgtggcgctcctcggtgagcgtgct 11744168

                                                                            
Query: 267      cccgacggcgcacctgagcatgtagatgccacccacgttggcggagctcatgtacgggcc 326
                 ||||||||||||||||||||||| | ||| || || |||||||||||||||||||| ||
Sbjct: 11744169 gccgacggcgcacctgagcatgtacacgccgccgacattggcggagctcatgtacggtcc 11744228

                                                                           
Query: 327      cgagccgaccgcgttcacctcctcgaggaggccccggttgagctcgttggccgtcttct 385
                ||||| | |||||||||||||||||||||| | || |||||||||||| ||||||||||
Sbjct: 11744229 cgagctggccgcgttcacctcctcgaggagccgcctgttgagctcgttcgccgtcttct 11744287



 Score =  113 bits (57), Expect = 6e-22
 Identities = 78/85 (91%)
 Strand = Plus / Plus

                                                                            
Query: 406      gaccggagcctgaagcacaccagcgcgaactgcctctccgtcaccacctcgaacctctcg 465
                |||||||||| ||||||||||||||||||| |||||  ||||||||||||||||||| ||
Sbjct: 11744296 gaccggagccggaagcacaccagcgcgaaccgcctcggcgtcaccacctcgaacctcgcg 11744355

                                         
Query: 466      tcggccctcaccatgtcctcgaacg 490
                |||||||| |||||| |||||||||
Sbjct: 11744356 tcggccctgaccatgccctcgaacg 11744380



 Score = 50.1 bits (25), Expect = 0.007
 Identities = 52/61 (85%)
 Strand = Plus / Plus

                                                                            
Query: 417      gaagcacaccagcgcgaactgcctctccgtcaccacctcgaacctctcgtcggccctcac 476
                ||||||||| || | ||||  ||||| || |||||||||||||| ||||||||| |||||
Sbjct: 13009329 gaagcacacgagggagaacctcctcttcgccaccacctcgaaccgctcgtcggcgctcac 13009388

                 
Query: 477      c 477
                |
Sbjct: 13009389 c 13009389



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>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence
          Length = 22698374

 Score =  188 bits (95), Expect = 1e-44
 Identities = 158/179 (88%)
 Strand = Plus / Plus

                                                                            
Query: 207      agcccgatcctggaccaccttccatgcatcagcgacgtggtgctcctccgtgagcgtgct 266
                ||||||||||||||| |||||||| || ||   ||||||| ||||||| |||||||||||
Sbjct: 11751449 agcccgatcctggacaaccttccaggcttcccggacgtggcgctcctcggtgagcgtgct 11751508

                                                                            
Query: 267      cccgacggcgcacctgagcatgtagatgccacccacgttggcggagctcatgtacgggcc 326
                 ||||||||||||||||||||||| | ||| || || |||||||||||||||||||| ||
Sbjct: 11751509 gccgacggcgcacctgagcatgtacacgccgccgacattggcggagctcatgtacggtcc 11751568

                                                                           
Query: 327      cgagccgaccgcgttcacctcctcgaggaggccccggttgagctcgttggccgtcttct 385
                ||||| | |||||||||||||||||||||| | || |||||||||||| ||||||||||
Sbjct: 11751569 cgagctggccgcgttcacctcctcgaggagccgcctgttgagctcgttcgccgtcttct 11751627



 Score =  113 bits (57), Expect = 6e-22
 Identities = 78/85 (91%)
 Strand = Plus / Plus

                                                                            
Query: 406      gaccggagcctgaagcacaccagcgcgaactgcctctccgtcaccacctcgaacctctcg 465
                |||||||||| ||||||||||||||||||| |||||  ||||||||||||||||||| ||
Sbjct: 11751636 gaccggagccggaagcacaccagcgcgaaccgcctcggcgtcaccacctcgaacctcgcg 11751695

                                         
Query: 466      tcggccctcaccatgtcctcgaacg 490
                |||||||| |||||| |||||||||
Sbjct: 11751696 tcggccctgaccatgccctcgaacg 11751720



 Score = 50.1 bits (25), Expect = 0.007
 Identities = 52/61 (85%)
 Strand = Plus / Plus

                                                                            
Query: 417      gaagcacaccagcgcgaactgcctctccgtcaccacctcgaacctctcgtcggccctcac 476
                ||||||||| || | ||||  ||||| || |||||||||||||| ||||||||| |||||
Sbjct: 13016669 gaagcacacgagggagaacctcctcttcgccaccacctcgaaccgctcgtcggcgctcac 13016728

                 
Query: 477      c 477
                |
Sbjct: 13016729 c 13016729



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>ref|NM_191411.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 1602

 Score =  165 bits (83), Expect = 2e-37
 Identities = 161/187 (86%)
 Strand = Plus / Minus

                                                                        
Query: 208  gcccgatcctggaccaccttccatgcatcagcgacgtggtgctcctccgtgagcgtgctc 267
            ||||| |||||||| |||||||| || ||   ||| ||| ||||||| ||||||||||||
Sbjct: 1574 gcccgctcctggacaaccttccacgcttcgcggacatggcgctcctcggtgagcgtgctc 1515

                                                                        
Query: 268  ccgacggcgcacctgagcatgtagatgccacccacgttggcggagctcatgtacgggccc 327
            |||| |||||||||||||||||| | |||||||||  ||||||||||||||||||| |||
Sbjct: 1514 ccgatggcgcacctgagcatgtacacgccacccaccatggcggagctcatgtacggcccc 1455

                                                                        
Query: 328  gagccgaccgcgttcacctcctcgaggaggccccggttgagctcgttggccgtcttctcg 387
            ||||   |||||||||||||||| ||||| | || |||||||||||| |||| |||||||
Sbjct: 1454 gagctcgccgcgttcacctcctccaggagcctcctgttgagctcgtttgccgccttctcg 1395

                   
Query: 388  ccgccga 394
            || ||||
Sbjct: 1394 cctccga 1388



 Score =  105 bits (53), Expect = 1e-19
 Identities = 80/89 (89%)
 Strand = Plus / Minus

                                                                        
Query: 402  cggcgaccggagcctgaagcacaccagcgcgaactgcctctccgtcaccacctcgaacct 461
            |||||||||||| | ||||||||||||||||||| |||||  || |||||||||||||||
Sbjct: 1359 cggcgaccggaggcggaagcacaccagcgcgaaccgcctcggcgccaccacctcgaacct 1300

                                         
Query: 462  ctcgtcggccctcaccatgtcctcgaacg 490
            | ||||| ||||||||||| |||||||||
Sbjct: 1299 cgcgtcgcccctcaccatggcctcgaacg 1271



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>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
                sequence
          Length = 43261740

 Score =  165 bits (83), Expect = 2e-37
 Identities = 161/187 (86%)
 Strand = Plus / Plus

                                                                            
Query: 208      gcccgatcctggaccaccttccatgcatcagcgacgtggtgctcctccgtgagcgtgctc 267
                ||||| |||||||| |||||||| || ||   ||| ||| ||||||| ||||||||||||
Sbjct: 32494519 gcccgctcctggacaaccttccacgcttcgcggacatggcgctcctcggtgagcgtgctc 32494578

                                                                            
Query: 268      ccgacggcgcacctgagcatgtagatgccacccacgttggcggagctcatgtacgggccc 327
                |||| |||||||||||||||||| | |||||||||  ||||||||||||||||||| |||
Sbjct: 32494579 ccgatggcgcacctgagcatgtacacgccacccaccatggcggagctcatgtacggcccc 32494638

                                                                            
Query: 328      gagccgaccgcgttcacctcctcgaggaggccccggttgagctcgttggccgtcttctcg 387
                ||||   |||||||||||||||| ||||| | || |||||||||||| |||| |||||||
Sbjct: 32494639 gagctcgccgcgttcacctcctccaggagcctcctgttgagctcgtttgccgccttctcg 32494698

                       
Query: 388      ccgccga 394
                || ||||
Sbjct: 32494699 cctccga 32494705



 Score =  105 bits (53), Expect = 1e-19
 Identities = 80/89 (89%)
 Strand = Plus / Plus

                                                                            
Query: 402      cggcgaccggagcctgaagcacaccagcgcgaactgcctctccgtcaccacctcgaacct 461
                |||||||||||| | ||||||||||||||||||| |||||  || |||||||||||||||
Sbjct: 32494734 cggcgaccggaggcggaagcacaccagcgcgaaccgcctcggcgccaccacctcgaacct 32494793

                                             
Query: 462      ctcgtcggccctcaccatgtcctcgaacg 490
                | ||||| ||||||||||| |||||||||
Sbjct: 32494794 cgcgtcgcccctcaccatggcctcgaacg 32494822



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>dbj|AP003106.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
             clone:P0665A11
          Length = 166421

 Score =  165 bits (83), Expect = 2e-37
 Identities = 161/187 (86%)
 Strand = Plus / Plus

                                                                         
Query: 208   gcccgatcctggaccaccttccatgcatcagcgacgtggtgctcctccgtgagcgtgctc 267
             ||||| |||||||| |||||||| || ||   ||| ||| ||||||| ||||||||||||
Sbjct: 82040 gcccgctcctggacaaccttccacgcttcgcggacatggcgctcctcggtgagcgtgctc 82099

                                                                         
Query: 268   ccgacggcgcacctgagcatgtagatgccacccacgttggcggagctcatgtacgggccc 327
             |||| |||||||||||||||||| | |||||||||  ||||||||||||||||||| |||
Sbjct: 82100 ccgatggcgcacctgagcatgtacacgccacccaccatggcggagctcatgtacggcccc 82159

                                                                         
Query: 328   gagccgaccgcgttcacctcctcgaggaggccccggttgagctcgttggccgtcttctcg 387
             ||||   |||||||||||||||| ||||| | || |||||||||||| |||| |||||||
Sbjct: 82160 gagctcgccgcgttcacctcctccaggagcctcctgttgagctcgtttgccgccttctcg 82219

                    
Query: 388   ccgccga 394
             || ||||
Sbjct: 82220 cctccga 82226



 Score =  105 bits (53), Expect = 1e-19
 Identities = 80/89 (89%)
 Strand = Plus / Plus

                                                                         
Query: 402   cggcgaccggagcctgaagcacaccagcgcgaactgcctctccgtcaccacctcgaacct 461
             |||||||||||| | ||||||||||||||||||| |||||  || |||||||||||||||
Sbjct: 82255 cggcgaccggaggcggaagcacaccagcgcgaaccgcctcggcgccaccacctcgaacct 82314

                                          
Query: 462   ctcgtcggccctcaccatgtcctcgaacg 490
             | ||||| ||||||||||| |||||||||
Sbjct: 82315 cgcgtcgcccctcaccatggcctcgaacg 82343



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>dbj|AB162137.1| Oryza sativa (japonica cultivar-group) TDC gene for tryptophan
            decarboxylase, complete cds
          Length = 1602

 Score =  165 bits (83), Expect = 2e-37
 Identities = 161/187 (86%)
 Strand = Plus / Minus

                                                                        
Query: 208  gcccgatcctggaccaccttccatgcatcagcgacgtggtgctcctccgtgagcgtgctc 267
            ||||| |||||||| |||||||| || ||   ||| ||| ||||||| ||||||||||||
Sbjct: 1574 gcccgctcctggacaaccttccacgcttcgcggacatggcgctcctcggtgagcgtgctc 1515

                                                                        
Query: 268  ccgacggcgcacctgagcatgtagatgccacccacgttggcggagctcatgtacgggccc 327
            |||| |||||||||||||||||| | |||||||||  ||||||||||||||||||| |||
Sbjct: 1514 ccgatggcgcacctgagcatgtacacgccacccaccatggcggagctcatgtacggcccc 1455

                                                                        
Query: 328  gagccgaccgcgttcacctcctcgaggaggccccggttgagctcgttggccgtcttctcg 387
            ||||   |||||||||||||||| ||||| | || |||||||||||| |||| |||||||
Sbjct: 1454 gagctcgccgcgttcacctcctccaggagcctcctgttgagctcgtttgccgccttctcg 1395

                   
Query: 388  ccgccga 394
            || ||||
Sbjct: 1394 cctccga 1388



 Score =  105 bits (53), Expect = 1e-19
 Identities = 80/89 (89%)
 Strand = Plus / Minus

                                                                        
Query: 402  cggcgaccggagcctgaagcacaccagcgcgaactgcctctccgtcaccacctcgaacct 461
            |||||||||||| | ||||||||||||||||||| |||||  || |||||||||||||||
Sbjct: 1359 cggcgaccggaggcggaagcacaccagcgcgaaccgcctcggcgccaccacctcgaacct 1300

                                         
Query: 462  ctcgtcggccctcaccatgtcctcgaacg 490
            | ||||| ||||||||||| |||||||||
Sbjct: 1299 cgcgtcgcccctcaccatggcctcgaacg 1271



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>dbj|AK065830.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013041D01, full
            insert sequence
          Length = 1922

 Score =  165 bits (83), Expect = 2e-37
 Identities = 161/187 (86%)
 Strand = Plus / Minus

                                                                        
Query: 208  gcccgatcctggaccaccttccatgcatcagcgacgtggtgctcctccgtgagcgtgctc 267
            ||||| |||||||| |||||||| || ||   ||| ||| ||||||| ||||||||||||
Sbjct: 1697 gcccgctcctggacaaccttccacgcttcgcggacatggcgctcctcggtgagcgtgctc 1638

                                                                        
Query: 268  ccgacggcgcacctgagcatgtagatgccacccacgttggcggagctcatgtacgggccc 327
            |||| |||||||||||||||||| | |||||||||  ||||||||||||||||||| |||
Sbjct: 1637 ccgatggcgcacctgagcatgtacacgccacccaccatggcggagctcatgtacggcccc 1578

                                                                        
Query: 328  gagccgaccgcgttcacctcctcgaggaggccccggttgagctcgttggccgtcttctcg 387
            ||||   |||||||||||||||| ||||| | || |||||||||||| |||| |||||||
Sbjct: 1577 gagctcgccgcgttcacctcctccaggagcctcctgttgagctcgtttgccgccttctcg 1518

                   
Query: 388  ccgccga 394
            || ||||
Sbjct: 1517 cctccga 1511



 Score =  105 bits (53), Expect = 1e-19
 Identities = 80/89 (89%)
 Strand = Plus / Minus

                                                                        
Query: 402  cggcgaccggagcctgaagcacaccagcgcgaactgcctctccgtcaccacctcgaacct 461
            |||||||||||| | ||||||||||||||||||| |||||  || |||||||||||||||
Sbjct: 1482 cggcgaccggaggcggaagcacaccagcgcgaaccgcctcggcgccaccacctcgaacct 1423

                                         
Query: 462  ctcgtcggccctcaccatgtcctcgaacg 490
            | ||||| ||||||||||| |||||||||
Sbjct: 1422 cgcgtcgcccctcaccatggcctcgaacg 1394



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>gb|AY111785.1| Zea mays CL244_1 mRNA sequence
          Length = 1880

 Score =  101 bits (51), Expect = 2e-18
 Identities = 159/195 (81%)
 Strand = Plus / Minus

                                                                        
Query: 248  gctcctccgtgagcgtgctcccgacggcgcacctgagcatgtagatgccacccacgttgg 307
            |||||||||| |||||||||||||  ||||| ||||||||||||| |||||| || || |
Sbjct: 1681 gctcctccgtaagcgtgctcccgatagcgcatctgagcatgtagacgccaccgacattag 1622

                                                                        
Query: 308  cggagctcatgtacgggcccgagccgaccgcgttcacctcctcgaggaggccccggttga 367
            | || |||||||| || || ||||   |||| ||||||||||| ||||| |  | |||||
Sbjct: 1621 cagaactcatgtagggcccagagcaagccgcattcacctcctctaggagccttctgttga 1562

                                                                        
Query: 368  gctcgttggccgtcttctcgccgccgaacttctccggcgaccggagcctgaagcacacca 427
            || ||||||||| |||   |||||| |||| ||| |||| ||||||||| ||||| || |
Sbjct: 1561 gcgcgttggccgccttggggccgcccaactcctcgggcgcccggagcctaaagcaaacga 1502

                           
Query: 428  gcgcgaactgcctct 442
            | ||||| |||||||
Sbjct: 1501 gtgcgaattgcctct 1487



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>ref|XM_475687.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 1698

 Score = 67.9 bits (34), Expect = 3e-08
 Identities = 111/136 (81%), Gaps = 3/136 (2%)
 Strand = Plus / Minus

                                                                        
Query: 240  gacgtggtgctcctccgtgagcgtgctcccgacggcgcacctgagcatgtagatgccacc 299
            ||||||||||||||| ||||||| | | ||||||||||| |  |||| ||| ||||| ||
Sbjct: 1518 gacgtggtgctcctcggtgagcgagttgccgacggcgcagcgcagcacgtacatgccgcc 1459

                                                                        
Query: 300  cacgttggcggagctcatgtacgggcccgagccgaccgcgttcacctcctcgaggaggcc 359
            |||   ||||||||||||||||| || |   ||   |||||||||| |||||||||| | 
Sbjct: 1458 caccacggcggagctcatgtacgcgcgc---cccgtcgcgttcaccgcctcgaggagcct 1402

                            
Query: 360  ccggttgagctcgttg 375
            || |||||||||||||
Sbjct: 1401 cctgttgagctcgttg 1386



 Score = 44.1 bits (22), Expect = 0.42
 Identities = 28/30 (93%)
 Strand = Plus / Minus

                                          
Query: 412  agcctgaagcacaccagcgcgaactgcctc 441
            |||| |||||| ||||||||||||||||||
Sbjct: 1331 agccggaagcagaccagcgcgaactgcctc 1302



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>gb|AC108873.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OJ1005_B11,
             complete sequence
          Length = 162772

 Score = 67.9 bits (34), Expect = 3e-08
 Identities = 111/136 (81%), Gaps = 3/136 (2%)
 Strand = Plus / Plus

                                                                         
Query: 240   gacgtggtgctcctccgtgagcgtgctcccgacggcgcacctgagcatgtagatgccacc 299
             ||||||||||||||| ||||||| | | ||||||||||| |  |||| ||| ||||| ||
Sbjct: 33777 gacgtggtgctcctcggtgagcgagttgccgacggcgcagcgcagcacgtacatgccgcc 33836

                                                                         
Query: 300   cacgttggcggagctcatgtacgggcccgagccgaccgcgttcacctcctcgaggaggcc 359
             |||   ||||||||||||||||| || |   ||   |||||||||| |||||||||| | 
Sbjct: 33837 caccacggcggagctcatgtacgcgcgc---cccgtcgcgttcaccgcctcgaggagcct 33893

                             
Query: 360   ccggttgagctcgttg 375
             || |||||||||||||
Sbjct: 33894 cctgttgagctcgttg 33909



 Score = 44.1 bits (22), Expect = 0.42
 Identities = 28/30 (93%)
 Strand = Plus / Plus

                                           
Query: 412   agcctgaagcacaccagcgcgaactgcctc 441
             |||| |||||| ||||||||||||||||||
Sbjct: 33964 agccggaagcagaccagcgcgaactgcctc 33993



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>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete
                sequence
          Length = 29737217

 Score = 67.9 bits (34), Expect = 3e-08
 Identities = 111/136 (81%), Gaps = 3/136 (2%)
 Strand = Plus / Plus

                                                                            
Query: 240      gacgtggtgctcctccgtgagcgtgctcccgacggcgcacctgagcatgtagatgccacc 299
                ||||||||||||||| ||||||| | | ||||||||||| |  |||| ||| ||||| ||
Sbjct: 25091122 gacgtggtgctcctcggtgagcgagttgccgacggcgcagcgcagcacgtacatgccgcc 25091181

                                                                            
Query: 300      cacgttggcggagctcatgtacgggcccgagccgaccgcgttcacctcctcgaggaggcc 359
                |||   ||||||||||||||||| || |   ||   |||||||||| |||||||||| | 
Sbjct: 25091182 caccacggcggagctcatgtacgcgcgc---cccgtcgcgttcaccgcctcgaggagcct 25091238

                                
Query: 360      ccggttgagctcgttg 375
                || |||||||||||||
Sbjct: 25091239 cctgttgagctcgttg 25091254



 Score = 44.1 bits (22), Expect = 0.42
 Identities = 28/30 (93%)
 Strand = Plus / Plus

                                              
Query: 412      agcctgaagcacaccagcgcgaactgcctc 441
                |||| |||||| ||||||||||||||||||
Sbjct: 25091309 agccggaagcagaccagcgcgaactgcctc 25091338



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>ref|NM_196380.1| Oryza sativa (japonica cultivar-group) putative tyrosine/dopa
            decarboxylase (OSJNBa0050N08.21), mRNA
          Length = 1509

 Score = 50.1 bits (25), Expect = 0.007
 Identities = 52/61 (85%)
 Strand = Plus / Minus

                                                                        
Query: 417  gaagcacaccagcgcgaactgcctctccgtcaccacctcgaacctctcgtcggccctcac 476
            ||||||||| || | ||||  ||||| || |||||||||||||| ||||||||| |||||
Sbjct: 1293 gaagcacacgagggagaacctcctcttcgccaccacctcgaaccgctcgtcggcgctcac 1234

             
Query: 477  c 477
            |
Sbjct: 1233 c 1233



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>gb|AC021891.6| Oryza sativa (japonica cultivar-group) chromosome 10 clone OSJNBa0050N08,
              complete sequence
          Length = 144593

 Score = 50.1 bits (25), Expect = 0.007
 Identities = 52/61 (85%)
 Strand = Plus / Plus

                                                                          
Query: 417    gaagcacaccagcgcgaactgcctctccgtcaccacctcgaacctctcgtcggccctcac 476
              ||||||||| || | ||||  ||||| || |||||||||||||| ||||||||| |||||
Sbjct: 108245 gaagcacacgagggagaacctcctcttcgccaccacctcgaaccgctcgtcggcgctcac 108304

               
Query: 477    c 477
              |
Sbjct: 108305 c 108305



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>dbj|AB028848.1| Tenebrio molitor mRNA for dopa decarboxylase, complete cds
          Length = 1596

 Score = 44.1 bits (22), Expect = 0.42
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                      
Query: 453  ctcgaacctctcgtcggccctcacca 478
            ||||||||||||||||| ||||||||
Sbjct: 1191 ctcgaacctctcgtcggacctcacca 1166



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>ref|NM_012398.1| Homo sapiens phosphatidylinositol-4-phosphate 5-kinase, type I, gamma
            (PIP5K1C), mRNA
          Length = 5047

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 293  tgccacccacgttggcggagctca 316
            ||||||||||| ||||||||||||
Sbjct: 2805 tgccacccacgctggcggagctca 2828



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>ref|XM_752556.1| Ustilago maydis 521 hypothetical protein (UM01502.1) partial mRNA
          Length = 3798

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 327  cgagccgaccgcgttcacct 346
            ||||||||||||||||||||
Sbjct: 1872 cgagccgaccgcgttcacct 1853



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>gb|BC004149.2| Homo sapiens phosphatidylinositol-4-phosphate 5-kinase, type I,
           gamma, mRNA (cDNA clone IMAGE:2819393), partial cds
          Length = 2297

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 293 tgccacccacgttggcggagctca 316
           ||||||||||| ||||||||||||
Sbjct: 23  tgccacccacgctggcggagctca 46



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>emb|AL138712.19| Human DNA sequence from clone RP11-502P18 on chromosome 13 Contains 3'
              end of novel gene similar to Drosophila CG11486,  and the
              3' end of the FLT1 gene for fms-related tyrosine kinase 1
              (vascular endothelial growth factor/vascular permeability
              factor receptor), complete sequence
          Length = 164519

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 37     attacaaatcctcgtggttc 56
              ||||||||||||||||||||
Sbjct: 102400 attacaaatcctcgtggttc 102419



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>emb|BX640442.1| Bordetella bronchiseptica strain RB50, complete genome; segment 6/16
          Length = 349876

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 416    tgaagcacaccagcgcgaac 435
              ||||||||||||||||||||
Sbjct: 267349 tgaagcacaccagcgcgaac 267368



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>emb|BX640430.1| Bordetella parapertussis strain 12822, complete genome; segment 8/14
          Length = 348014

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 416    tgaagcacaccagcgcgaac 435
              ||||||||||||||||||||
Sbjct: 178817 tgaagcacaccagcgcgaac 178836



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>emb|BX640417.1| Bordetella pertussis strain Tohama I, complete genome; segment 7/12
          Length = 348934

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 416    tgaagcacaccagcgcgaac 435
              ||||||||||||||||||||
Sbjct: 328735 tgaagcacaccagcgcgaac 328716



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>gb|AE005705.1| Caulobacter crescentus CB15 section 31 of 359 of the complete genome
          Length = 11217

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 381  cttctcgccgccgaacttct 400
            ||||||||||||||||||||
Sbjct: 8478 cttctcgccgccgaacttct 8497



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>gb|CP000250.1| Rhodopseudomonas palustris HaA2, complete genome
          Length = 5331656

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                       
Query: 382     ttctcgccgccgaacttctccggc 405
               ||||||||||||| ||||||||||
Sbjct: 2995308 ttctcgccgccgatcttctccggc 2995331



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>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete
                sequence
          Length = 27566993

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 375      ggccgtcttctcgccgccga 394
                ||||||||||||||||||||
Sbjct: 23994241 ggccgtcttctcgccgccga 23994260



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>emb|BX000696.19| Zebrafish DNA sequence from clone CH211-107E16 in linkage group 11,
             complete sequence
          Length = 154744

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 423   caccagcgcgaactgcctct 442
             ||||||||||||||||||||
Sbjct: 92204 caccagcgcgaactgcctct 92185



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>dbj|AK106536.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-108-C04, full
           insert sequence
          Length = 2377

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 375 ggccgtcttctcgccgccga 394
           ||||||||||||||||||||
Sbjct: 68  ggccgtcttctcgccgccga 87



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>dbj|AK073095.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033005D09, full
           insert sequence
          Length = 2346

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 375 ggccgtcttctcgccgccga 394
           ||||||||||||||||||||
Sbjct: 69  ggccgtcttctcgccgccga 88



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>gb|AC005542.1|AC005542 Homo sapiens chromosome 19, cosmid R32516, complete sequence
          Length = 38209

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 293   tgccacccacgttggcggagctca 316
             ||||||||||| ||||||||||||
Sbjct: 16040 tgccacccacgctggcggagctca 16017



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>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence
          Length = 27492551

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 375      ggccgtcttctcgccgccga 394
                ||||||||||||||||||||
Sbjct: 23922447 ggccgtcttctcgccgccga 23922466



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>emb|AL928774.3|CNS08CC4 Oryza sativa chromosome 12, . BAC OSJNBa0078O17 of library OSJNBa from
             chromosome 12 of cultivar Nipponbare of ssp. japonica of
             Oryza sativa (rice), complete sequence
          Length = 176388

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 375   ggccgtcttctcgccgccga 394
             ||||||||||||||||||||
Sbjct: 93155 ggccgtcttctcgccgccga 93136



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>dbj|AB011161.1| Homo sapiens mRNA for KIAA0589 protein, partial cds
          Length = 5047

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 293  tgccacccacgttggcggagctca 316
            ||||||||||| ||||||||||||
Sbjct: 2805 tgccacccacgctggcggagctca 2828


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,642,224
Number of Sequences: 3902068
Number of extensions: 3642224
Number of successful extensions: 63727
Number of sequences better than 10.0: 34
Number of HSP's better than 10.0 without gapping: 34
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 63437
Number of HSP's gapped (non-prelim): 290
length of query: 490
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 468
effective length of database: 17,147,199,772
effective search space: 8024889493296
effective search space used: 8024889493296
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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