ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbart22f02
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1ref|NM_185777.1| Oryza sativa (japonica cultivar-group), predic... 153 6e-34
2dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic D... 153 6e-34
3dbj|AP005813.1| Oryza sativa (japonica cultivar-group) genomic D... 153 6e-34
4dbj|AK106489.1| Oryza sativa (japonica cultivar-group) cDNA clon... 153 6e-34
5dbj|AP004328.2| Oryza sativa (japonica cultivar-group) genomic D... 56 1e-04
6dbj|AK107013.1| Oryza sativa (japonica cultivar-group) cDNA clon... 56 1e-04
7ref|NM_185776.1| Oryza sativa (japonica cultivar-group), predic... 54 4e-04
8dbj|AP003491.3| Oryza sativa (japonica cultivar-group) genomic D... 54 4e-04
9dbj|AK106309.1| Oryza sativa (japonica cultivar-group) cDNA clon... 54 4e-04
10ref|XM_467595.1| Oryza sativa (japonica cultivar-group), mRNA 42 1.5
11emb|CR381607.8| Zebrafish DNA sequence from clone CH211-125I6 in... 42 1.5
12gb|AE011812.1| Xanthomonas axonopodis pv. citri str. 306, secti... 42 1.5
13gb|CP000232.1| Moorella thermoacetica ATCC 39073, complete genome 42 1.5
14dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D... 42 1.5
15gb|AC022087.8|AC022087 Homo sapiens chromosome 15 clone CTD-3110... 42 1.5
16dbj|AP005751.3| Oryza sativa (japonica cultivar-group) genomic D... 42 1.5
17gb|AE014295.3| Bifidobacterium longum NCC2705, complete genome 42 1.5
18gb|AC104862.15| Mus musculus chromosome 15, clone RP23-124I9, co... 40 5.7
19gb|AE007207.1| Sinorhizobium meliloti 1021 plasmid pSymA section... 40 5.7
20gb|AC097351.2| Sus scrofa clone RP44-368D24, complete sequence 40 5.7
21emb|BX640437.1| Bordetella bronchiseptica strain RB50, complete ... 40 5.7
22emb|BX640423.1| Bordetella parapertussis strain 12822, complete ... 40 5.7
23emb|AL606649.4|OSJN00094 Oryza sativa genomic DNA, chromosome 4,... 40 5.7
24gb|AF306785.1|AF306785 Mus musculus type II keratin 5 (K5) gene,... 40 5.7
25dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic D... 40 5.7
26dbj|AP005170.3| Oryza sativa (japonica cultivar-group) genomic D... 40 5.7
27dbj|AP004785.2| Oryza sativa (japonica cultivar-group) genomic D... 40 5.7
28dbj|AK070786.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 5.7
29gb|L11256.1|SMAINFCA Serratia marcescens translation initiation ... 40 5.7
30gb|AC005255.1|AC005255 Homo sapiens chromosome 19, CIT-HSP-146e8... 40 5.7 
>ref|NM_185777.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 1428

 Score =  153 bits (77), Expect = 6e-34
 Identities = 143/165 (86%)
 Strand = Plus / Minus

                                                                        
Query: 261  atctgaaacagcagctcgttccacacatcgatcggtccgggtaagcaccagtgcaggcag 320
            ||||||| |||||| ||||||||||| ||||||| |||||| ||||||||||||||||||
Sbjct: 1412 atctgaagcagcaggtcgttccacacgtcgatcgctccgggcaagcaccagtgcaggcag 1353

                                                                        
Query: 321  tcgacgtcgaagccgccgtggtcgccggcgccgtgtccgtgccgatcggggtgcccgtcc 380
            ||||  ||||| ||| |||| |||||| |||| || |||||||| || ||||||||||||
Sbjct: 1352 tcgatctcgaatccgtcgtgctcgccgccgccatgcccgtgccggtccgggtgcccgtcc 1293

                                                         
Query: 381  ggacgtcgcagcatgattcgggtcacgtccatcagcctgagccgc 425
            || ||  ||||||| || || ||||||||||||||||| ||||||
Sbjct: 1292 ggccggagcagcatcatccgcgtcacgtccatcagcctcagccgc 1248
to top
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete
               sequence
          Length = 30731886

 Score =  153 bits (77), Expect = 6e-34
 Identities = 143/165 (86%)
 Strand = Plus / Minus

                                                                           
Query: 261     atctgaaacagcagctcgttccacacatcgatcggtccgggtaagcaccagtgcaggcag 320
               ||||||| |||||| ||||||||||| ||||||| |||||| ||||||||||||||||||
Sbjct: 9266169 atctgaagcagcaggtcgttccacacgtcgatcgctccgggcaagcaccagtgcaggcag 9266110

                                                                           
Query: 321     tcgacgtcgaagccgccgtggtcgccggcgccgtgtccgtgccgatcggggtgcccgtcc 380
               ||||  ||||| ||| |||| |||||| |||| || |||||||| || ||||||||||||
Sbjct: 9266109 tcgatctcgaatccgtcgtgctcgccgccgccatgcccgtgccggtccgggtgcccgtcc 9266050

                                                            
Query: 381     ggacgtcgcagcatgattcgggtcacgtccatcagcctgagccgc 425
               || ||  ||||||| || || ||||||||||||||||| ||||||
Sbjct: 9266049 ggccggagcagcatcatccgcgtcacgtccatcagcctcagccgc 9266005



 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 43/48 (89%)
 Strand = Plus / Minus

                                                                
Query: 276      tcgttccacacatcgatcggtccgggtaagcaccagtgcaggcagtcg 323
                ||||||||| |||| || || ||||| |||||||||||||||||||||
Sbjct: 19070179 tcgttccacgcatcaataggaccgggcaagcaccagtgcaggcagtcg 19070132



 Score = 54.0 bits (27), Expect = 4e-04
 Identities = 48/55 (87%)
 Strand = Plus / Minus

                                                                      
Query: 269     cagcagctcgttccacacatcgatcggtccgggtaagcaccagtgcaggcagtcg 323
               ||||| |||||||||||||||||  ||||| || | ||||||||||| |||||||
Sbjct: 9258942 cagcatctcgttccacacatcgacgggtccagggaggcaccagtgcacgcagtcg 9258888



 Score = 54.0 bits (27), Expect = 4e-04
 Identities = 48/55 (87%)
 Strand = Plus / Minus

                                                                      
Query: 269     cagcagctcgttccacacatcgatcggtccgggtaagcaccagtgcaggcagtcg 323
               ||||| |||||||||||| ||||| ||||| || | ||||||||||| |||||||
Sbjct: 9234126 cagcatctcgttccacacgtcgatgggtccaggcaggcaccagtgcacgcagtcg 9234072



 Score = 54.0 bits (27), Expect = 4e-04
 Identities = 48/55 (87%)
 Strand = Plus / Plus

                                                                      
Query: 269     cagcagctcgttccacacatcgatcggtccgggtaagcaccagtgcaggcagtcg 323
               ||||| |||||||||||| ||||| ||||| || | ||||||||||| |||||||
Sbjct: 9218780 cagcatctcgttccacacgtcgatgggtccagggaggcaccagtgcacgcagtcg 9218834



 Score = 40.1 bits (20), Expect = 5.7
 Identities = 41/48 (85%)
 Strand = Plus / Plus

                                                               
Query: 276     tcgttccacacatcgatcggtccgggtaagcaccagtgcaggcagtcg 323
               ||||||||||  ||||| || || || | |||||||||||||||||||
Sbjct: 7011311 tcgttccacatgtcgatgggccccgggatgcaccagtgcaggcagtcg 7011358
to top
>dbj|AP005813.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC
             clone:P0676F10
          Length = 142510

 Score =  153 bits (77), Expect = 6e-34
 Identities = 143/165 (86%)
 Strand = Plus / Minus

                                                                         
Query: 261   atctgaaacagcagctcgttccacacatcgatcggtccgggtaagcaccagtgcaggcag 320
             ||||||| |||||| ||||||||||| ||||||| |||||| ||||||||||||||||||
Sbjct: 33510 atctgaagcagcaggtcgttccacacgtcgatcgctccgggcaagcaccagtgcaggcag 33451

                                                                         
Query: 321   tcgacgtcgaagccgccgtggtcgccggcgccgtgtccgtgccgatcggggtgcccgtcc 380
             ||||  ||||| ||| |||| |||||| |||| || |||||||| || ||||||||||||
Sbjct: 33450 tcgatctcgaatccgtcgtgctcgccgccgccatgcccgtgccggtccgggtgcccgtcc 33391

                                                          
Query: 381   ggacgtcgcagcatgattcgggtcacgtccatcagcctgagccgc 425
             || ||  ||||||| || || ||||||||||||||||| ||||||
Sbjct: 33390 ggccggagcagcatcatccgcgtcacgtccatcagcctcagccgc 33346



 Score = 54.0 bits (27), Expect = 4e-04
 Identities = 48/55 (87%)
 Strand = Plus / Minus

                                                                    
Query: 269   cagcagctcgttccacacatcgatcggtccgggtaagcaccagtgcaggcagtcg 323
             ||||| |||||||||||||||||  ||||| || | ||||||||||| |||||||
Sbjct: 26283 cagcatctcgttccacacatcgacgggtccagggaggcaccagtgcacgcagtcg 26229



 Score = 54.0 bits (27), Expect = 4e-04
 Identities = 48/55 (87%)
 Strand = Plus / Minus

                                                                   
Query: 269  cagcagctcgttccacacatcgatcggtccgggtaagcaccagtgcaggcagtcg 323
            ||||| |||||||||||| ||||| ||||| || | ||||||||||| |||||||
Sbjct: 1467 cagcatctcgttccacacgtcgatgggtccaggcaggcaccagtgcacgcagtcg 1413
to top
>dbj|AK106489.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-105-A03, full
            insert sequence
          Length = 1562

 Score =  153 bits (77), Expect = 6e-34
 Identities = 143/165 (86%)
 Strand = Plus / Minus

                                                                        
Query: 261  atctgaaacagcagctcgttccacacatcgatcggtccgggtaagcaccagtgcaggcag 320
            ||||||| |||||| ||||||||||| ||||||| |||||| ||||||||||||||||||
Sbjct: 1393 atctgaagcagcaggtcgttccacacgtcgatcgctccgggcaagcaccagtgcaggcag 1334

                                                                        
Query: 321  tcgacgtcgaagccgccgtggtcgccggcgccgtgtccgtgccgatcggggtgcccgtcc 380
            ||||  ||||| ||| |||| |||||| |||| || |||||||| || ||||||||||||
Sbjct: 1333 tcgatctcgaatccgtcgtgctcgccgccgccatgcccgtgccggtccgggtgcccgtcc 1274

                                                         
Query: 381  ggacgtcgcagcatgattcgggtcacgtccatcagcctgagccgc 425
            || ||  ||||||| || || ||||||||||||||||| ||||||
Sbjct: 1273 ggccggagcagcatcatccgcgtcacgtccatcagcctcagccgc 1229
to top
>dbj|AP004328.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC
             clone:OJ1616_B03
          Length = 96081

 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 43/48 (89%)
 Strand = Plus / Minus

                                                             
Query: 276   tcgttccacacatcgatcggtccgggtaagcaccagtgcaggcagtcg 323
             ||||||||| |||| || || ||||| |||||||||||||||||||||
Sbjct: 67663 tcgttccacgcatcaataggaccgggcaagcaccagtgcaggcagtcg 67616
to top
>dbj|AK107013.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-120-F10, full
            insert sequence
          Length = 1683

 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 43/48 (89%)
 Strand = Plus / Minus

                                                            
Query: 276  tcgttccacacatcgatcggtccgggtaagcaccagtgcaggcagtcg 323
            ||||||||| |||| || || ||||| |||||||||||||||||||||
Sbjct: 1355 tcgttccacgcatcaataggaccgggcaagcaccagtgcaggcagtcg 1308
to top
>ref|NM_185776.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 1221

 Score = 54.0 bits (27), Expect = 4e-04
 Identities = 48/55 (87%)
 Strand = Plus / Minus

                                                                   
Query: 269  cagcagctcgttccacacatcgatcggtccgggtaagcaccagtgcaggcagtcg 323
            ||||| |||||||||||||||||  ||||| || | ||||||||||| |||||||
Sbjct: 1191 cagcatctcgttccacacatcgacgggtccagggaggcaccagtgcacgcagtcg 1137
to top
>dbj|AP003491.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC
              clone:P0662B01
          Length = 155913

 Score = 54.0 bits (27), Expect = 4e-04
 Identities = 48/55 (87%)
 Strand = Plus / Minus

                                                                     
Query: 269    cagcagctcgttccacacatcgatcggtccgggtaagcaccagtgcaggcagtcg 323
              ||||| |||||||||||||||||  ||||| || | ||||||||||| |||||||
Sbjct: 152964 cagcatctcgttccacacatcgacgggtccagggaggcaccagtgcacgcagtcg 152910



 Score = 54.0 bits (27), Expect = 4e-04
 Identities = 48/55 (87%)
 Strand = Plus / Minus

                                                                     
Query: 269    cagcagctcgttccacacatcgatcggtccgggtaagcaccagtgcaggcagtcg 323
              ||||| |||||||||||| ||||| ||||| || | ||||||||||| |||||||
Sbjct: 128148 cagcatctcgttccacacgtcgatgggtccaggcaggcaccagtgcacgcagtcg 128094



 Score = 54.0 bits (27), Expect = 4e-04
 Identities = 48/55 (87%)
 Strand = Plus / Plus

                                                                     
Query: 269    cagcagctcgttccacacatcgatcggtccgggtaagcaccagtgcaggcagtcg 323
              ||||| |||||||||||| ||||| ||||| || | ||||||||||| |||||||
Sbjct: 112802 cagcatctcgttccacacgtcgatgggtccagggaggcaccagtgcacgcagtcg 112856
to top
>dbj|AK106309.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-101-D01, full
            insert sequence
          Length = 1584

 Score = 54.0 bits (27), Expect = 4e-04
 Identities = 48/55 (87%)
 Strand = Plus / Minus

                                                                   
Query: 269  cagcagctcgttccacacatcgatcggtccgggtaagcaccagtgcaggcagtcg 323
            ||||| |||||||||||||||||  ||||| || | ||||||||||| |||||||
Sbjct: 1337 cagcatctcgttccacacatcgacgggtccagggaggcaccagtgcacgcagtcg 1283
to top
>ref|XM_467595.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1551

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 45/53 (84%)
 Strand = Plus / Minus

                                                                 
Query: 267  aacagcagctcgttccacacatcgatcggtccgggtaagcaccagtgcaggca 319
            |||||||||||| ||||||  || ||||| || || |||||||| ||||||||
Sbjct: 1529 aacagcagctcgctccacaggtcaatcggccccggcaagcaccaatgcaggca 1477
to top
>emb|CR381607.8| Zebrafish DNA sequence from clone CH211-125I6 in linkage group 7,
             complete sequence
          Length = 94930

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 215   acaatgcaagagcagaaaaggaacc 239
             |||||||||| ||||||||||||||
Sbjct: 67987 acaatgcaagtgcagaaaaggaacc 67963
to top
>gb|AE011812.1| Xanthomonas axonopodis pv. citri str. 306,  section 190 of 469 of the
            complete genome
          Length = 10164

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                     
Query: 333  ccgccgtggtcgccggcgccgtgtc 357
            ||||||||||||||||||| |||||
Sbjct: 1367 ccgccgtggtcgccggcgcagtgtc 1391
to top
>gb|CP000232.1| Moorella thermoacetica ATCC 39073, complete genome
          Length = 2628784

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                    
Query: 334     cgccgtggtcgccggcgccgt 354
               |||||||||||||||||||||
Sbjct: 2044328 cgccgtggtcgccggcgccgt 2044308
to top
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
                sequence
          Length = 35954743

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 45/53 (84%)
 Strand = Plus / Minus

                                                                     
Query: 267      aacagcagctcgttccacacatcgatcggtccgggtaagcaccagtgcaggca 319
                |||||||||||| ||||||  || ||||| || || |||||||| ||||||||
Sbjct: 30362915 aacagcagctcgctccacaggtcaatcggccccggcaagcaccaatgcaggca 30362863
to top
>gb|AC022087.8|AC022087 Homo sapiens chromosome 15 clone CTD-3110H11 map 15q21.1, complete
             sequence
          Length = 117627

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 77    tccctcacaggtcacagcata 97
             |||||||||||||||||||||
Sbjct: 99736 tccctcacaggtcacagcata 99716
to top
>dbj|AP005751.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
             clone:OSJNBa0072H09
          Length = 160541

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 45/53 (84%)
 Strand = Plus / Minus

                                                                  
Query: 267   aacagcagctcgttccacacatcgatcggtccgggtaagcaccagtgcaggca 319
             |||||||||||| ||||||  || ||||| || || |||||||| ||||||||
Sbjct: 43775 aacagcagctcgctccacaggtcaatcggccccggcaagcaccaatgcaggca 43723
to top
>gb|AE014295.3| Bifidobacterium longum NCC2705, complete genome
          Length = 2256640

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                       
Query: 329    gaagccgccgtggtcgccggcgccg 353
              ||||||||||||||||||| |||||
Sbjct: 330969 gaagccgccgtggtcgccgtcgccg 330993
to top
>gb|AC104862.15| Mus musculus chromosome 15, clone RP23-124I9, complete sequence
          Length = 168581

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 74   ttgtccctcacaggtcacag 93
            ||||||||||||||||||||
Sbjct: 6984 ttgtccctcacaggtcacag 6965
to top
>gb|AE007207.1| Sinorhizobium meliloti 1021 plasmid pSymA section 13 of 121 of the
            complete plasmid sequence
          Length = 10596

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 328  cgaagccgccgtggtcgccg 347
            ||||||||||||||||||||
Sbjct: 8865 cgaagccgccgtggtcgccg 8884
to top
>gb|AC097351.2| Sus scrofa clone RP44-368D24, complete sequence
          Length = 81648

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 214   aacaatgcaagagcagaaaaggaa 237
             ||||||| ||||||||||||||||
Sbjct: 63148 aacaatgaaagagcagaaaaggaa 63171
to top
>emb|BX640437.1| Bordetella bronchiseptica strain RB50, complete genome; segment 1/16
          Length = 347356

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 333    ccgccgtggtcgccggcgcc 352
              ||||||||||||||||||||
Sbjct: 107005 ccgccgtggtcgccggcgcc 106986
to top
>emb|BX640423.1| Bordetella parapertussis strain 12822, complete genome; segment 1/14
          Length = 348251

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 333    ccgccgtggtcgccggcgcc 352
              ||||||||||||||||||||
Sbjct: 114311 ccgccgtggtcgccggcgcc 114292
to top
>emb|AL606649.4|OSJN00094 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0003B01,
             complete sequence
          Length = 153643

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 334   cgccgtggtcgccggcgccg 353
             ||||||||||||||||||||
Sbjct: 34252 cgccgtggtcgccggcgccg 34271
to top
>gb|AF306785.1|AF306785 Mus musculus type II keratin 5 (K5) gene, complete cds
          Length = 10700

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 74   ttgtccctcacaggtcacag 93
            ||||||||||||||||||||
Sbjct: 3707 ttgtccctcacaggtcacag 3726
to top
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
                sequence
          Length = 35498469

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 334      cgccgtggtcgccggcgccg 353
                ||||||||||||||||||||
Sbjct: 32515518 cgccgtggtcgccggcgccg 32515537
to top
>dbj|AP005170.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC
             clone:OSJNBa0080E19
          Length = 152755

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 41/48 (85%)
 Strand = Plus / Plus

                                                             
Query: 276   tcgttccacacatcgatcggtccgggtaagcaccagtgcaggcagtcg 323
             ||||||||||  ||||| || || || | |||||||||||||||||||
Sbjct: 32098 tcgttccacatgtcgatgggccccgggatgcaccagtgcaggcagtcg 32145
to top
>dbj|AP004785.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC
             clone:OSJNBb0061B07
          Length = 124766

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 41/48 (85%)
 Strand = Plus / Plus

                                                             
Query: 276   tcgttccacacatcgatcggtccgggtaagcaccagtgcaggcagtcg 323
             ||||||||||  ||||| || || || | |||||||||||||||||||
Sbjct: 70738 tcgttccacatgtcgatgggccccgggatgcaccagtgcaggcagtcg 70785
to top
>dbj|AK070786.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023064M09, full
           insert sequence
          Length = 1258

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 334 cgccgtggtcgccggcgccg 353
           ||||||||||||||||||||
Sbjct: 525 cgccgtggtcgccggcgccg 544
to top
>gb|L11256.1|SMAINFCA Serratia marcescens translation initiation factor IF3 (infC) gene,
           complete cds
          Length = 579

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 196 acagagaaattcgcgcgcaa 215
           ||||||||||||||||||||
Sbjct: 65  acagagaaattcgcgcgcaa 84
to top
>gb|AC005255.1|AC005255 Homo sapiens chromosome 19, CIT-HSP-146e8, complete sequence
          Length = 94343

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 403   tcacgtccatcagcctgagc 422
             ||||||||||||||||||||
Sbjct: 47272 tcacgtccatcagcctgagc 47291


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,554,596
Number of Sequences: 3902068
Number of extensions: 2554596
Number of successful extensions: 47039
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 31
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 46831
Number of HSP's gapped (non-prelim): 206
length of query: 428
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 406
effective length of database: 17,147,199,772
effective search space: 6961763107432
effective search space used: 6961763107432
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
to top