ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbart22e10
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1ref|XM_483787.1| Oryza sativa (japonica cultivar-group), mRNA 54 3e-04
2ref|XM_507340.1| PREDICTED Oryza sativa (japonica cultivar-group... 54 3e-04
3dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic D... 54 3e-04
4dbj|AP005544.3| Oryza sativa (japonica cultivar-group) genomic D... 54 3e-04
5dbj|AK099177.1| Oryza sativa (japonica cultivar-group) cDNA clon... 54 3e-04
6dbj|AK071683.1| Oryza sativa (japonica cultivar-group) cDNA clon... 54 3e-04
7gb|AC134592.5| Mus musculus BAC clone RP23-381O3 from chromosome... 48 0.016
8gb|AC127269.3| Mus musculus BAC clone RP23-432B20 from chromosom... 48 0.016
9gb|AC117616.8| Mus musculus chromosome 9, clone RP23-111P13, com... 48 0.016
10ref|XM_482444.1| Oryza sativa (japonica cultivar-group), mRNA 46 0.065
11dbj|AP004005.3| Oryza sativa (japonica cultivar-group) genomic D... 46 0.065
12dbj|AK073563.1| Oryza sativa (japonica cultivar-group) cDNA clon... 46 0.065
13ref|NM_196690.1| Oryza sativa (japonica cultivar-group) putative... 44 0.26
14emb|AL939105.1|SCO939105 Streptomyces coelicolor A3(2) complete ... 44 0.26
15gb|AC087550.3| Oryza sativa (japonica cultivar-group) chromosome... 44 0.26
16dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic D... 44 0.26
17dbj|AK067419.1| Oryza sativa (japonica cultivar-group) cDNA clon... 44 0.26
18gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome... 44 0.26
19ref|NM_192212.1| Oryza sativa (japonica cultivar-group), predic... 42 1.0
20dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 42 1.0
21gb|AC092384.5| Homo sapiens chromosome 16 clone RP11-830F9, comp... 42 1.0
22dbj|AP003378.4| Oryza sativa (japonica cultivar-group) genomic D... 42 1.0
23dbj|AP003245.4| Oryza sativa (japonica cultivar-group) genomic D... 42 1.0
24dbj|AK108651.1| Oryza sativa (japonica cultivar-group) cDNA clon... 42 1.0
25emb|CR937049.3| CH230-323M7, complete sequence 42 1.0
26ref|NM_117435.1| Arabidopsis thaliana DNA (cytosine-5-)-methyltr... 40 4.0
27ref|XM_421132.1| PREDICTED: Gallus gallus similar to Delta-like ... 40 4.0
28gb|CP000125.1| Burkholderia pseudomallei 1710b chromosome II, co... 40 4.0
29gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 40 4.0
30ref|XM_390193.1| Gibberella zeae PH-1 chromosome 1 hypothetical ... 40 4.0
31gb|AC106820.4| Homo sapiens chromosome 16 clone RP11-715J22, com... 40 4.0
32emb|AL583803.2| Human DNA sequence from clone RP11-102N11 on chr... 40 4.0
33emb|AL445669.9| Human DNA sequence from clone RP11-163G10 on chr... 40 4.0
34emb|AL160264.22| Human DNA sequence from clone RP3-405J24 on chr... 40 4.0
35emb|AL596272.1|LMFL1994U Leishmania major Friedlin cosmid L1994,... 40 4.0
36emb|AL161537.2|ATCHRIV37 Arabidopsis thaliana DNA chromosome 4, ... 40 4.0
37emb|AL049656.1|ATT6G15 Arabidopsis thaliana DNA chromosome 4, BA... 40 4.0
38gb|AC144491.1| Oryza sativa (japonica cultivar-group) chromosome... 40 4.0
39gb|AC022267.8|AC022267 Homo sapiens BAC clone RP11-407H18 from 4... 40 4.0
40dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 40 4.0
41gb|AC126221.2| Oryza sativa (japonica cultivar-group) chromosome... 40 4.0
42gb|AY112602.1| Zea mays CL6289_1 mRNA sequence 40 4.0 
>ref|XM_483787.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1595

 Score = 54.0 bits (27), Expect = 3e-04
 Identities = 45/51 (88%)
 Strand = Plus / Minus

                                                               
Query: 205  cgttgtcggaggtggtggaggaaggcgggaggaggggctgggtgatggagg 255
            |||||||||||| || ||||| |||| | |||||||||||||||| |||||
Sbjct: 1283 cgttgtcggaggaggaggaggtaggcagcaggaggggctgggtgacggagg 1233
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>ref|XM_507340.1| PREDICTED Oryza sativa (japonica cultivar-group), P0604E01.39 mRNA
          Length = 1601

 Score = 54.0 bits (27), Expect = 3e-04
 Identities = 45/51 (88%)
 Strand = Plus / Minus

                                                               
Query: 205  cgttgtcggaggtggtggaggaaggcgggaggaggggctgggtgatggagg 255
            |||||||||||| || ||||| |||| | |||||||||||||||| |||||
Sbjct: 1289 cgttgtcggaggaggaggaggtaggcagcaggaggggctgggtgacggagg 1239
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>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete
                sequence
          Length = 28434780

 Score = 54.0 bits (27), Expect = 3e-04
 Identities = 45/51 (88%)
 Strand = Plus / Minus

                                                                   
Query: 205      cgttgtcggaggtggtggaggaaggcgggaggaggggctgggtgatggagg 255
                |||||||||||| || ||||| |||| | |||||||||||||||| |||||
Sbjct: 28114014 cgttgtcggaggaggaggaggtaggcagcaggaggggctgggtgacggagg 28113964



 Score = 46.1 bits (23), Expect = 0.065
 Identities = 29/31 (93%)
 Strand = Plus / Plus

                                               
Query: 212      ggaggtggtggaggaaggcgggaggaggggc 242
                ||||||||||||||| ||| |||||||||||
Sbjct: 20122824 ggaggtggtggaggatggccggaggaggggc 20122854
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>dbj|AP005544.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC
              clone:P0604E01
          Length = 159049

 Score = 54.0 bits (27), Expect = 3e-04
 Identities = 45/51 (88%)
 Strand = Plus / Minus

                                                                 
Query: 205    cgttgtcggaggtggtggaggaaggcgggaggaggggctgggtgatggagg 255
              |||||||||||| || ||||| |||| | |||||||||||||||| |||||
Sbjct: 111509 cgttgtcggaggaggaggaggtaggcagcaggaggggctgggtgacggagg 111459
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>dbj|AK099177.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023096J12, full
            insert sequence
          Length = 1595

 Score = 54.0 bits (27), Expect = 3e-04
 Identities = 45/51 (88%)
 Strand = Plus / Minus

                                                               
Query: 205  cgttgtcggaggtggtggaggaaggcgggaggaggggctgggtgatggagg 255
            |||||||||||| || ||||| |||| | |||||||||||||||| |||||
Sbjct: 1283 cgttgtcggaggaggaggaggtaggcagcaggaggggctgggtgacggagg 1233
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>dbj|AK071683.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023109M16, full
            insert sequence
          Length = 1601

 Score = 54.0 bits (27), Expect = 3e-04
 Identities = 45/51 (88%)
 Strand = Plus / Minus

                                                               
Query: 205  cgttgtcggaggtggtggaggaaggcgggaggaggggctgggtgatggagg 255
            |||||||||||| || ||||| |||| | |||||||||||||||| |||||
Sbjct: 1289 cgttgtcggaggaggaggaggtaggcagcaggaggggctgggtgacggagg 1239
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>gb|AC134592.5| Mus musculus BAC clone RP23-381O3 from chromosome 9, complete sequence
          Length = 184917

 Score = 48.1 bits (24), Expect = 0.016
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                     
Query: 30    cataatcaagcatgatccaaacaa 53
             ||||||||||||||||||||||||
Sbjct: 43470 cataatcaagcatgatccaaacaa 43493
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>gb|AC127269.3| Mus musculus BAC clone RP23-432B20 from chromosome 9, complete sequence
          Length = 212660

 Score = 48.1 bits (24), Expect = 0.016
 Identities = 24/24 (100%)
 Strand = Plus / Minus

                                     
Query: 30    cataatcaagcatgatccaaacaa 53
             ||||||||||||||||||||||||
Sbjct: 22457 cataatcaagcatgatccaaacaa 22434
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>gb|AC117616.8| Mus musculus chromosome 9, clone RP23-111P13, complete sequence
          Length = 242288

 Score = 48.1 bits (24), Expect = 0.016
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                     
Query: 30    cataatcaagcatgatccaaacaa 53
             ||||||||||||||||||||||||
Sbjct: 79754 cataatcaagcatgatccaaacaa 79777
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>ref|XM_482444.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 2104

 Score = 46.1 bits (23), Expect = 0.065
 Identities = 29/31 (93%)
 Strand = Plus / Plus

                                          
Query: 212 ggaggtggtggaggaaggcgggaggaggggc 242
           ||||||||||||||| ||| |||||||||||
Sbjct: 161 ggaggtggtggaggatggccggaggaggggc 191
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>dbj|AP004005.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC
             clone:OJ1188_F05
          Length = 117045

 Score = 46.1 bits (23), Expect = 0.065
 Identities = 29/31 (93%)
 Strand = Plus / Plus

                                            
Query: 212   ggaggtggtggaggaaggcgggaggaggggc 242
             ||||||||||||||| ||| |||||||||||
Sbjct: 69370 ggaggtggtggaggatggccggaggaggggc 69400
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>dbj|AK073563.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033041K18, full
           insert sequence
          Length = 2104

 Score = 46.1 bits (23), Expect = 0.065
 Identities = 29/31 (93%)
 Strand = Plus / Plus

                                          
Query: 212 ggaggtggtggaggaaggcgggaggaggggc 242
           ||||||||||||||| ||| |||||||||||
Sbjct: 161 ggaggtggtggaggatggccggaggaggggc 191
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>ref|NM_196690.1| Oryza sativa (japonica cultivar-group) putative splicing
           factor-like protein (OSJNBb0016G17.19), mRNA
          Length = 1650

 Score = 44.1 bits (22), Expect = 0.26
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                 
Query: 280 cgtcgcggccgccgccggagga 301
           ||||||||||||||||||||||
Sbjct: 124 cgtcgcggccgccgccggagga 103
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>emb|AL939105.1|SCO939105 Streptomyces coelicolor A3(2) complete genome; segment 2/29
          Length = 291000

 Score = 44.1 bits (22), Expect = 0.26
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 276   cggacgtcgcggccgccgccgg 297
             ||||||||||||||||||||||
Sbjct: 66541 cggacgtcgcggccgccgccgg 66520
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>gb|AC087550.3| Oryza sativa (japonica cultivar-group) chromosome 10 clone nbeb0016G17,
              complete sequence
          Length = 141041

 Score = 44.1 bits (22), Expect = 0.26
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                    
Query: 280    cgtcgcggccgccgccggagga 301
              ||||||||||||||||||||||
Sbjct: 120252 cgtcgcggccgccgccggagga 120231
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>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete
                sequence
          Length = 22685906

 Score = 44.1 bits (22), Expect = 0.26
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                      
Query: 280      cgtcgcggccgccgccggagga 301
                ||||||||||||||||||||||
Sbjct: 15266553 cgtcgcggccgccgccggagga 15266532
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>dbj|AK067419.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013102K13, full
           insert sequence
          Length = 3306

 Score = 44.1 bits (22), Expect = 0.26
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                 
Query: 280 cgtcgcggccgccgccggagga 301
           ||||||||||||||||||||||
Sbjct: 212 cgtcgcggccgccgccggagga 191
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>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence
          Length = 22698374

 Score = 44.1 bits (22), Expect = 0.26
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                      
Query: 280      cgtcgcggccgccgccggagga 301
                ||||||||||||||||||||||
Sbjct: 15274794 cgtcgcggccgccgccggagga 15274773
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>ref|NM_192212.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 1128

 Score = 42.1 bits (21), Expect = 1.0
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                    
Query: 275 ccggacgtcgcggccgccgccggag 299
           |||| ||||||||||||||||||||
Sbjct: 273 ccggtcgtcgcggccgccgccggag 297
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>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
                sequence
          Length = 43261740

 Score = 42.1 bits (21), Expect = 1.0
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                         
Query: 275      ccggacgtcgcggccgccgccggag 299
                |||| ||||||||||||||||||||
Sbjct: 29045228 ccggtcgtcgcggccgccgccggag 29045204
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>gb|AC092384.5| Homo sapiens chromosome 16 clone RP11-830F9, complete sequence
          Length = 219070

 Score = 42.1 bits (21), Expect = 1.0
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                           
Query: 212    ggaggtggtggaggaaggcgggaggaggg 240
              ||||| || ||||||||||||||||||||
Sbjct: 122028 ggagggggcggaggaaggcgggaggaggg 122056
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>dbj|AP003378.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
             clone:P0047E11
          Length = 148109

 Score = 42.1 bits (21), Expect = 1.0
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 275   ccggacgtcgcggccgccgccggag 299
             |||| ||||||||||||||||||||
Sbjct: 89586 ccggtcgtcgcggccgccgccggag 89562
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>dbj|AP003245.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
            clone:P0421H07
          Length = 158126

 Score = 42.1 bits (21), Expect = 1.0
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                     
Query: 275  ccggacgtcgcggccgccgccggag 299
            |||| ||||||||||||||||||||
Sbjct: 5594 ccggtcgtcgcggccgccgccggag 5570
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>dbj|AK108651.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-148-C09, full
           insert sequence
          Length = 1433

 Score = 42.1 bits (21), Expect = 1.0
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                    
Query: 275 ccggacgtcgcggccgccgccggag 299
           |||| ||||||||||||||||||||
Sbjct: 407 ccggtcgtcgcggccgccgccggag 431
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>emb|CR937049.3| CH230-323M7, complete sequence
          Length = 198674

 Score = 42.1 bits (21), Expect = 1.0
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 250    tggaggcagaggcaagcttgg 270
              |||||||||||||||||||||
Sbjct: 167595 tggaggcagaggcaagcttgg 167575
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>ref|NM_117435.1| Arabidopsis thaliana DNA (cytosine-5-)-methyltransferase/ DNA binding
            AT4G13610 mRNA, complete cds
          Length = 4215

 Score = 40.1 bits (20), Expect = 4.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 155  atttaaacgagaaaacccct 174
            ||||||||||||||||||||
Sbjct: 3276 atttaaacgagaaaacccct 3257
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>ref|XM_421132.1| PREDICTED: Gallus gallus similar to Delta-like protein 4 precursor
           (Drosophila Delta homolog 4) (UNQ1895/PRO4341)
           (LOC423208), mRNA
          Length = 3061

 Score = 40.1 bits (20), Expect = 4.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 282 tcgcggccgccgccggagga 301
           ||||||||||||||||||||
Sbjct: 724 tcgcggccgccgccggagga 743
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>gb|CP000125.1| Burkholderia pseudomallei 1710b chromosome II, complete sequence
          Length = 3181762

 Score = 40.1 bits (20), Expect = 4.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 278     gacgtcgcggccgccgccgg 297
               ||||||||||||||||||||
Sbjct: 3147612 gacgtcgcggccgccgccgg 3147631
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>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score = 40.1 bits (20), Expect = 4.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 50      acaatcctactactactact 69
               ||||||||||||||||||||
Sbjct: 3811436 acaatcctactactactact 3811417
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>ref|XM_390193.1| Gibberella zeae PH-1 chromosome 1 hypothetical protein (FG10017.1)
            partial mRNA
          Length = 4044

 Score = 40.1 bits (20), Expect = 4.0
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 205  cgttgtcggaggtggtggaggaag 228
            ||||| ||||||||||||||||||
Sbjct: 3399 cgttggcggaggtggtggaggaag 3376
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>gb|AC106820.4| Homo sapiens chromosome 16 clone RP11-715J22, complete sequence
          Length = 176552

 Score = 40.1 bits (20), Expect = 4.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 238   ggggctgggtgatggaggca 257
             ||||||||||||||||||||
Sbjct: 71026 ggggctgggtgatggaggca 71045
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>emb|AL583803.2| Human DNA sequence from clone RP11-102N11 on chromosome 6 Contains part
             of a novel gene, complete sequence
          Length = 32469

 Score = 40.1 bits (20), Expect = 4.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 221   ggaggaaggcgggaggaggg 240
             ||||||||||||||||||||
Sbjct: 31670 ggaggaaggcgggaggaggg 31689
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>emb|AL445669.9| Human DNA sequence from clone RP11-163G10 on chromosome 1 Contains
            the 5' end of the ZMYND12 gene for zinc finger MYND
            domain containing 12, a novel gene, the 5' end of a novel
            gene, a ribosomal protein S3a (RPS3A) pseudogene, a
            thymosin, beta 4, X-linked (TMSB4X) pseudogene, a novel
            pseudogene (DC2) and two CpG islands, complete sequence
          Length = 153640

 Score = 40.1 bits (20), Expect = 4.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 185  tagcacaatcaagtttcaga 204
            ||||||||||||||||||||
Sbjct: 2490 tagcacaatcaagtttcaga 2471
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>emb|AL160264.22| Human DNA sequence from clone RP3-405J24 on chromosome 6 Contains the
             FDG2 gene for FGD1 family member 2, the gene for a novel
             protein similar to cytochrome c oxidase subunit VIa
             polypeptide 1 (COX6A1) (COX6A, COX6AL) and  ribosomal
             protein L12  (RPL12) pseudogene, complete sequence
          Length = 89881

 Score = 40.1 bits (20), Expect = 4.0
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 239   gggctgggtgatggaggcagaggc 262
             ||||||||||| ||||||||||||
Sbjct: 49322 gggctgggtgaaggaggcagaggc 49299
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>emb|AL596272.1|LMFL1994U Leishmania major Friedlin cosmid L1994, chimeric portion
          Length = 21597

 Score = 40.1 bits (20), Expect = 4.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 277   ggacgtcgcggccgccgccg 296
             ||||||||||||||||||||
Sbjct: 16744 ggacgtcgcggccgccgccg 16725
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>emb|AL161537.2|ATCHRIV37 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 37
          Length = 199667

 Score = 40.1 bits (20), Expect = 4.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 155   atttaaacgagaaaacccct 174
             ||||||||||||||||||||
Sbjct: 11918 atttaaacgagaaaacccct 11899
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>emb|AL049656.1|ATT6G15 Arabidopsis thaliana DNA chromosome 4, BAC clone  T6G15 (ESSA project)
          Length = 113970

 Score = 40.1 bits (20), Expect = 4.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 155    atttaaacgagaaaacccct 174
              ||||||||||||||||||||
Sbjct: 104344 atttaaacgagaaaacccct 104325
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>gb|AC144491.1| Oryza sativa (japonica cultivar-group) chromosome 3 clone
             OSJNAa0091P11, complete sequence
          Length = 132151

 Score = 40.1 bits (20), Expect = 4.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 50    acaatcctactactactact 69
             ||||||||||||||||||||
Sbjct: 90060 acaatcctactactactact 90041
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>gb|AC022267.8|AC022267 Homo sapiens BAC clone RP11-407H18 from 4, complete sequence
          Length = 199472

 Score = 40.1 bits (20), Expect = 4.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 8      cataatgcacataccataaa 27
              ||||||||||||||||||||
Sbjct: 101814 cataatgcacataccataaa 101833
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>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
               sequence
          Length = 36192742

 Score = 40.1 bits (20), Expect = 4.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 50      acaatcctactactactact 69
               ||||||||||||||||||||
Sbjct: 3811547 acaatcctactactactact 3811528
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>gb|AC126221.2| Oryza sativa (japonica cultivar-group) chromosome 3 clone
             OSJNBa0015N19, complete sequence
          Length = 168430

 Score = 40.1 bits (20), Expect = 4.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 50    acaatcctactactactact 69
             ||||||||||||||||||||
Sbjct: 17909 acaatcctactactactact 17890
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>gb|AY112602.1| Zea mays CL6289_1 mRNA sequence
          Length = 1769

 Score = 40.1 bits (20), Expect = 4.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 280 cgtcgcggccgccgccggag 299
           ||||||||||||||||||||
Sbjct: 173 cgtcgcggccgccgccggag 192


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,956,924
Number of Sequences: 3902068
Number of extensions: 2956924
Number of successful extensions: 136795
Number of sequences better than 10.0: 42
Number of HSP's better than 10.0 without gapping: 43
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 136134
Number of HSP's gapped (non-prelim): 661
length of query: 305
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 283
effective length of database: 17,147,199,772
effective search space: 4852657535476
effective search space used: 4852657535476
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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