ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbart22e09
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1DIC_HUMAN (Q9UBX3) Mitochondrial dicarboxylate carrier (Solute c... 35 0.12
2DIC_MOUSE (Q9QZD8) Mitochondrial dicarboxylate carrier (Solute c... 33 0.34
3OAC1_YEAST (P32332) Mitochondrial oxaloacetate transport protein... 31 1.3
4M2OM_RAT (P97700) Mitochondrial 2-oxoglutarate/malate carrier pr... 31 1.3
5M2OM_MOUSE (Q9CR62) Mitochondrial 2-oxoglutarate/malate carrier ... 31 1.3
6M2OM_BOVIN (P22292) Mitochondrial 2-oxoglutarate/malate carrier ... 31 1.7
7M2OM_HUMAN (Q02978) Mitochondrial 2-oxoglutarate/malate carrier ... 30 2.2
8COX18_YEAST (P53239) Inner membrane protein COX18, mitochondrial... 29 4.9
9ARGJ_SYNEL (Q8DHN4) Arginine biosynthesis bifunctional protein a... 28 8.4

>DIC_HUMAN (Q9UBX3) Mitochondrial dicarboxylate carrier (Solute carrier family|
           25 member 10)
          Length = 287

 Score = 34.7 bits (78), Expect = 0.12
 Identities = 15/36 (41%), Positives = 23/36 (63%)
 Frame = -3

Query: 455 CAMQTMKTGGPFKFYSGFPVYCVRIAPHVMMTWLFL 348
           CA++T K G P  FY G     +R+ PH ++T++FL
Sbjct: 240 CAVETAKLG-PLAFYKGLVPAGIRLIPHTVLTFVFL 274



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>DIC_MOUSE (Q9QZD8) Mitochondrial dicarboxylate carrier (Solute carrier family|
           25 member 10)
          Length = 287

 Score = 33.1 bits (74), Expect = 0.34
 Identities = 15/36 (41%), Positives = 23/36 (63%)
 Frame = -3

Query: 455 CAMQTMKTGGPFKFYSGFPVYCVRIAPHVMMTWLFL 348
           CAM+T K G P  F+ G     +R+ PH ++T++FL
Sbjct: 239 CAMETAKLG-PQAFFKGLFPAGIRLIPHTVLTFMFL 273



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>OAC1_YEAST (P32332) Mitochondrial oxaloacetate transport protein|
           (Mitochondrial carrier protein PMT)
          Length = 324

 Score = 31.2 bits (69), Expect = 1.3
 Identities = 13/36 (36%), Positives = 19/36 (52%)
 Frame = -3

Query: 455 CAMQTMKTGGPFKFYSGFPVYCVRIAPHVMMTWLFL 348
           C ++T++  G    Y GF     RIAPH +M   F+
Sbjct: 271 CLVKTVRIEGVTALYKGFAAQVFRIAPHTIMCLTFM 306



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>M2OM_RAT (P97700) Mitochondrial 2-oxoglutarate/malate carrier protein (OGCP)|
           (Solute carrier family 25 member 11)
          Length = 313

 Score = 31.2 bits (69), Expect = 1.3
 Identities = 11/34 (32%), Positives = 21/34 (61%)
 Frame = -3

Query: 449 MQTMKTGGPFKFYSGFPVYCVRIAPHVMMTWLFL 348
           ++ ++  G F  + GF  Y  R+ PH ++T++FL
Sbjct: 266 LKVVRYEGFFSLWKGFTPYYARLGPHTVLTFIFL 299



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>M2OM_MOUSE (Q9CR62) Mitochondrial 2-oxoglutarate/malate carrier protein (OGCP)|
           (Solute carrier family 25 member 11)
          Length = 313

 Score = 31.2 bits (69), Expect = 1.3
 Identities = 11/34 (32%), Positives = 21/34 (61%)
 Frame = -3

Query: 449 MQTMKTGGPFKFYSGFPVYCVRIAPHVMMTWLFL 348
           ++ ++  G F  + GF  Y  R+ PH ++T++FL
Sbjct: 266 LKVVRYEGFFSLWKGFTPYYARLGPHTVLTFIFL 299



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>M2OM_BOVIN (P22292) Mitochondrial 2-oxoglutarate/malate carrier protein (OGCP)|
           (Solute carrier family 25 member 11)
          Length = 313

 Score = 30.8 bits (68), Expect = 1.7
 Identities = 11/34 (32%), Positives = 21/34 (61%)
 Frame = -3

Query: 449 MQTMKTGGPFKFYSGFPVYCVRIAPHVMMTWLFL 348
           ++ ++  G F  + GF  Y  R+ PH ++T++FL
Sbjct: 266 VKVVRYEGFFSLWKGFTPYYARLGPHTVLTFIFL 299



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>M2OM_HUMAN (Q02978) Mitochondrial 2-oxoglutarate/malate carrier protein (OGCP)|
           (Solute carrier family 25 member 11)
          Length = 313

 Score = 30.4 bits (67), Expect = 2.2
 Identities = 11/27 (40%), Positives = 17/27 (62%)
 Frame = -3

Query: 428 GPFKFYSGFPVYCVRIAPHVMMTWLFL 348
           G F  + GF  Y  R+ PH ++T++FL
Sbjct: 273 GFFSLWKGFTPYYARLGPHTVLTFIFL 299



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>COX18_YEAST (P53239) Inner membrane protein COX18, mitochondrial precursor|
           (Cytochrome c oxidase assembly protein 18)
          Length = 316

 Score = 29.3 bits (64), Expect = 4.9
 Identities = 12/27 (44%), Positives = 17/27 (62%)
 Frame = -1

Query: 301 SWRQYQSLLDTFNNFSAALHLPWLFLV 221
           S+  +QS+ DTF     A H+PW+ LV
Sbjct: 34  SFSLFQSVADTFLTVHEASHIPWIVLV 60



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>ARGJ_SYNEL (Q8DHN4) Arginine biosynthesis bifunctional protein argJ [Includes:|
           Glutamate N-acetyltransferase (EC 2.3.1.35) (Ornithine
           acetyltransferase) (Ornithine transacetylase) (OATase);
           Amino-acid acetyltransferase (EC 2.3.1.1)
           (N-acetylglutamate syn
          Length = 419

 Score = 28.5 bits (62), Expect = 8.4
 Identities = 15/40 (37%), Positives = 19/40 (47%)
 Frame = +1

Query: 1   KISNGLN*AYTIQDQMAQAAKQVVVSHGCAQPTEVCRQKL 120
           K S   + A  + D  A AA     +H CA P   CRQ+L
Sbjct: 27  KASGAPDLALIVSDVPAIAAGVFTTNHMCAAPVRYCRQRL 66


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 65,211,984
Number of Sequences: 219361
Number of extensions: 1172893
Number of successful extensions: 3038
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 2973
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3038
length of database: 80,573,946
effective HSP length: 102
effective length of database: 58,199,124
effective search space used: 2851757076
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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