>PGFRA_MOUSE (P26618) Alpha platelet-derived growth factor receptor precursor (EC|
            2.7.10.1) (PDGF-R-alpha)
          Length = 1089

 Score = 31.2 bits (69), Expect = 0.70
 Identities = 10/23 (43%), Positives = 18/23 (78%)
 Frame = +2

Query: 149  PLPSVNPIPES*TMGKQHQHKSE 217
            PLP ++P+PE   +GK+++H S+
Sbjct: 1021 PLPDIDPVPEEEDLGKRNRHSSQ 1043

>PGFRA_HUMAN (P16234) Alpha platelet-derived growth factor receptor precursor (EC|
            2.7.10.1) (PDGF-R-alpha) (CD140a antigen)
          Length = 1089

 Score = 31.2 bits (69), Expect = 0.70
 Identities = 10/23 (43%), Positives = 18/23 (78%)
 Frame = +2

Query: 149  PLPSVNPIPES*TMGKQHQHKSE 217
            PLP ++P+PE   +GK+++H S+
Sbjct: 1021 PLPDIDPVPEEEDLGKRNRHSSQ 1043

>PGFRA_RAT (P20786) Alpha platelet-derived growth factor receptor precursor (EC|
            2.7.10.1) (PDGF-R-alpha)
          Length = 1088

 Score = 31.2 bits (69), Expect = 0.70
 Identities = 10/23 (43%), Positives = 18/23 (78%)
 Frame = +2

Query: 149  PLPSVNPIPES*TMGKQHQHKSE 217
            PLP ++P+PE   +GK+++H S+
Sbjct: 1020 PLPDIDPVPEEEDLGKRNRHSSQ 1042

>PILS_PSEAE (P33639) Sensor protein pilS (EC 2.7.13.3)|
          Length = 530

 Score = 28.5 bits (62), Expect = 4.5
 Identities = 14/40 (35%), Positives = 21/40 (52%), Gaps = 1/40 (2%)
 Frame = +1

Query: 109 NSDTAIHCHKQWR-SPSIRKPNT*ILNNGQAAPTQI*ILN 225
           +S   +HC KQWR +PS+R P   ++ +G         LN
Sbjct: 242 HSPMLMHCMKQWRLNPSLRPPTLKVVPDGPTVQPSFISLN 281

>SLUG_RAT (O08954) Zinc finger protein SLUG (Neural crest transcription|
           factor Slug) (Snail homolog 2)
          Length = 268

 Score = 27.7 bits (60), Expect = 7.8
 Identities = 20/81 (24%), Positives = 31/81 (38%), Gaps = 28/81 (34%)
 Frame = +2

Query: 44  YNKYTTSIISV*NYECTIYPPTILIQPSIVTNNG--------------DPLPS------- 160
           Y++  T  + +  Y C  YP  ++ +P I+T+                 PLPS       
Sbjct: 19  YSELDTHTVIISPYLCESYPMPVIPKPEILTSGAYSPITVWTSAVPFHSPLPSGLSPLTG 78

Query: 161 -------VNPIPES*TMGKQH 202
                  V+P+P S T  K H
Sbjct: 79  YSSSLGRVSPLPSSDTSSKDH 99

>TENR_HUMAN (Q92752) Tenascin-R precursor (TN-R) (Restrictin) (Janusin)|
          Length = 1358

 Score = 27.7 bits (60), Expect = 7.8
 Identities = 10/34 (29%), Positives = 18/34 (52%)
 Frame = -3

Query: 196 LAHCSGFRYWVYGWKGIAIVCDNGWLYQNCWRVY 95
           + HCSG  +  + ++    +C+ GW  +NC   Y
Sbjct: 172 IPHCSG--HGNFSFESCGCICNEGWFGKNCSEPY 203


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 48,694,985
Number of Sequences: 219361
Number of extensions: 1020896
Number of successful extensions: 2510
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 2470
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2509
length of database: 80,573,946
effective HSP length: 74
effective length of database: 64,341,232
effective search space used: 1544189568
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)