ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbart22d12
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1ref|XM_777505.1| PREDICTED: Strongylocentrotus purpuratus simila... 42 0.99
2gb|AC146039.2| Pan troglodytes BAC clone RP43-97H7 from 7, compl... 40 3.9
3gb|AC004981.2| Homo sapiens PAC clone RP5-1159C10 from 7, comple... 40 3.9
4gb|AC093230.2| Homo sapiens chromosome 19 clone LLNLF-130H12, co... 40 3.9
5gb|AC008500.7| Homo sapiens chromosome 5 clone CTC-439D5, comple... 40 3.9
6gb|AC010972.3|AC010972 Homo sapiens clone RP11-133D3, complete s... 40 3.9
7gb|AC026029.8| Homo sapiens BAC clone RP11-16G16 from 4, complet... 40 3.9
8gb|AC092311.3| Homo sapiens chromosome 19 clone LLNLR-278C11, co... 40 3.9
9gb|AE001437.1| Clostridium acetobutylicum ATCC 824, complete genome 40 3.9
10gb|AC161811.6| Mus musculus chromosome 5, clone RP23-456E9, comp... 40 3.9
11gb|AC138365.16| Mus musculus chromosome 5, clone RP23-262B5, com... 40 3.9
12emb|AL824705.5| Mouse DNA sequence from clone RP23-102G9 on chro... 40 3.9

>ref|XM_777505.1| PREDICTED: Strongylocentrotus purpuratus similar to BAP28 protein
            (LOC577264), mRNA
          Length = 2553

 Score = 42.1 bits (21), Expect = 0.99
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                     
Query: 238  agcagcatccatgaactgaacgatg 262
            ||||||| |||||||||||||||||
Sbjct: 2286 agcagcaaccatgaactgaacgatg 2262



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>gb|AC146039.2| Pan troglodytes BAC clone RP43-97H7 from 7, complete sequence
          Length = 144149

 Score = 40.1 bits (20), Expect = 3.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 80    aactatgaatgtaccatata 99
             ||||||||||||||||||||
Sbjct: 34844 aactatgaatgtaccatata 34825



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>gb|AC004981.2| Homo sapiens PAC clone RP5-1159C10 from 7, complete sequence
          Length = 149687

 Score = 40.1 bits (20), Expect = 3.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 80     aactatgaatgtaccatata 99
              ||||||||||||||||||||
Sbjct: 124426 aactatgaatgtaccatata 124445



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>gb|AC093230.2| Homo sapiens chromosome 19 clone LLNLF-130H12, complete sequence
          Length = 46127

 Score = 40.1 bits (20), Expect = 3.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 93   ccatataccctccaacaatt 112
            ||||||||||||||||||||
Sbjct: 9381 ccatataccctccaacaatt 9400



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>gb|AC008500.7| Homo sapiens chromosome 5 clone CTC-439D5, complete sequence
          Length = 264095

 Score = 40.1 bits (20), Expect = 3.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 23     caaagaaaacaatgggtcca 42
              ||||||||||||||||||||
Sbjct: 110806 caaagaaaacaatgggtcca 110787



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>gb|AC010972.3|AC010972 Homo sapiens clone RP11-133D3, complete sequence
          Length = 114637

 Score = 40.1 bits (20), Expect = 3.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 5      gccaaagtacatatactgca 24
              ||||||||||||||||||||
Sbjct: 109436 gccaaagtacatatactgca 109417



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>gb|AC026029.8| Homo sapiens BAC clone RP11-16G16 from 4, complete sequence
          Length = 173067

 Score = 40.1 bits (20), Expect = 3.9
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 200   caccaacacaaatctgaattctga 223
             ||||||||||||||||||| ||||
Sbjct: 76831 caccaacacaaatctgaatactga 76854



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>gb|AC092311.3| Homo sapiens chromosome 19 clone LLNLR-278C11, complete sequence
          Length = 27896

 Score = 40.1 bits (20), Expect = 3.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 93    ccatataccctccaacaatt 112
             ||||||||||||||||||||
Sbjct: 15406 ccatataccctccaacaatt 15387



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>gb|AE001437.1| Clostridium acetobutylicum ATCC 824, complete genome
          Length = 3940880

 Score = 40.1 bits (20), Expect = 3.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 10     agtacatatactgcaaagaa 29
              ||||||||||||||||||||
Sbjct: 416464 agtacatatactgcaaagaa 416483



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>gb|AC161811.6| Mus musculus chromosome 5, clone RP23-456E9, complete sequence
          Length = 163565

 Score = 40.1 bits (20), Expect = 3.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 20    ctgcaaagaaaacaatgggt 39
             ||||||||||||||||||||
Sbjct: 57458 ctgcaaagaaaacaatgggt 57439



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>gb|AC138365.16| Mus musculus chromosome 5, clone RP23-262B5, complete sequence
          Length = 172631

 Score = 40.1 bits (20), Expect = 3.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 20    ctgcaaagaaaacaatgggt 39
             ||||||||||||||||||||
Sbjct: 70984 ctgcaaagaaaacaatgggt 71003



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>emb|AL824705.5| Mouse DNA sequence from clone RP23-102G9 on chromosome 4, complete
            sequence
          Length = 144458

 Score = 40.1 bits (20), Expect = 3.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 205  acacaaatctgaattctgaa 224
            ||||||||||||||||||||
Sbjct: 8463 acacaaatctgaattctgaa 8444


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,600,246
Number of Sequences: 3902068
Number of extensions: 2600246
Number of successful extensions: 51243
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 51223
Number of HSP's gapped (non-prelim): 20
length of query: 297
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 275
effective length of database: 17,147,199,772
effective search space: 4715479937300
effective search space used: 4715479937300
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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