ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbart22d11 |
|---|---|
| Clone Library Name | barley_pub |
>ORYA_ORYSA (P25776) Oryzain alpha chain precursor (EC 3.4.22.-)| Length = 458 Score = 54.7 bits (130), Expect = 9e-08 Identities = 29/44 (65%), Positives = 35/44 (79%) Frame = -1 Query: 425 CNTKQGTCLAAKDSPLSVKAQRRTLAKPIGAFSGIAIDGKKSSA 294 CN +QGTCL AKDSPL+VKA +RTLAKP +F + +GKKSSA Sbjct: 417 CNVQQGTCLMAKDSPLAVKALKRTLAKPNLSF--LFGNGKKSSA 458
>CYSPL_LYCES (P20721) Low-temperature-induced cysteine proteinase precursor (EC| 3.4.22.-) (Fragment) Length = 346 Score = 51.2 bits (121), Expect = 1e-06 Identities = 25/44 (56%), Positives = 31/44 (70%) Frame = -1 Query: 425 CNTKQGTCLAAKDSPLSVKAQRRTLAKPIGAFSGIAIDGKKSSA 294 CN +QGTC +K +PL VKA +R LA+PIGAF GKKSS+ Sbjct: 306 CNVRQGTCSMSKGNPLGVKAMKRILAQPIGAFGN---GGKKSSS 346
>ORYB_ORYSA (P25777) Oryzain beta chain precursor (EC 3.4.22.-)| Length = 471 Score = 45.1 bits (105), Expect = 7e-05 Identities = 20/27 (74%), Positives = 24/27 (88%) Frame = -1 Query: 425 CNTKQGTCLAAKDSPLSVKAQRRTLAK 345 CNT+ GTC A+K+SPLSVKA +RTLAK Sbjct: 435 CNTRAGTCSASKNSPLSVKALKRTLAK 461
>RD21A_ARATH (P43297) Cysteine proteinase RD21a precursor (EC 3.4.22.-) (RD21)| Length = 462 Score = 36.2 bits (82), Expect = 0.033 Identities = 16/28 (57%), Positives = 20/28 (71%) Frame = -1 Query: 425 CNTKQGTCLAAKDSPLSVKAQRRTLAKP 342 C+ QGTCL +K+SP SVKA +R A P Sbjct: 425 CDLDQGTCLLSKNSPFSVKALKRKPATP 452
>PO2F2_PIG (Q29013) POU domain, class 2, transcription factor 2| (Octamer-binding transcription factor 2) (Oct-2) (OTF-2) (Lymphoid-restricted immunoglobulin octamer-binding protein NF-A2) Length = 478 Score = 33.1 bits (74), Expect = 0.28 Identities = 17/44 (38%), Positives = 23/44 (52%) Frame = -3 Query: 330 LWHCN*RQEEQRVNICITAFVQPTAMVINFCK*SPGDPRSKAQH 199 +W CN RQ+E+R+N C A + P SPG P S + H Sbjct: 343 VWFCNRRQKEKRINPCSAAPMLP----------SPGKPASYSPH 376
>PO2F2_HUMAN (P09086) POU domain, class 2, transcription factor 2| (Octamer-binding transcription factor 2) (Oct-2) (OTF-2) (Lymphoid-restricted immunoglobulin octamer-binding protein NF-A2) Length = 478 Score = 33.1 bits (74), Expect = 0.28 Identities = 17/44 (38%), Positives = 23/44 (52%) Frame = -3 Query: 330 LWHCN*RQEEQRVNICITAFVQPTAMVINFCK*SPGDPRSKAQH 199 +W CN RQ+E+R+N C A + P SPG P S + H Sbjct: 342 VWFCNRRQKEKRINPCSAAPMLP----------SPGKPASYSPH 375
>PO2F2_MOUSE (Q00196) POU domain, class 2, transcription factor 2| (Octamer-binding transcription factor 2) (Oct-2) (OTF-2) (Lymphoid-restricted immunoglobulin octamer-binding protein NF-A2) Length = 462 Score = 33.1 bits (74), Expect = 0.28 Identities = 17/44 (38%), Positives = 23/44 (52%) Frame = -3 Query: 330 LWHCN*RQEEQRVNICITAFVQPTAMVINFCK*SPGDPRSKAQH 199 +W CN RQ+E+R+N C A + P SPG P S + H Sbjct: 326 VWFCNRRQKEKRINPCSAAPMLP----------SPGKPTSYSPH 359
>AT1A1_OREMO (Q9YH26) Sodium/potassium-transporting ATPase alpha-1 chain precursor| (EC 3.6.3.9) (Sodium pump 1) (Na+/K+ ATPase 1) Length = 1023 Score = 30.8 bits (68), Expect = 1.4 Identities = 11/27 (40%), Positives = 15/27 (55%) Frame = +1 Query: 61 CVGMS*VLHIHMQKQIWWFCKRPNPIL 141 C GM L ++ K +WWFC P +L Sbjct: 971 CPGMDVALRMYPMKPLWWFCAFPYSLL 997
>SOMA_PANTR (P58756) Somatotropin precursor (Growth hormone) (GH) (GH-N)| (Pituitary growth hormone) (Growth hormone 1) Length = 217 Score = 29.3 bits (64), Expect = 4.0 Identities = 21/68 (30%), Positives = 29/68 (42%), Gaps = 10/68 (14%) Frame = +1 Query: 130 NPILGLCTGASII----------KKILESIAIAMLRLRSWITR*SFAEVNHHGRWLYECR 279 NP LC SI K LE + I++L ++SW+ F +Y Sbjct: 73 NPQTSLCFSESIPTPSNREETQQKSNLELLRISLLLIQSWLEPVQFLRSVFANSLVYGAS 132 Query: 280 DANVYALL 303 D+NVY LL Sbjct: 133 DSNVYDLL 140
>SOMA_HUMAN (P01241) Somatotropin precursor (Growth hormone) (GH) (GH-N)| (Pituitary growth hormone) (Growth hormone 1) Length = 217 Score = 29.3 bits (64), Expect = 4.0 Identities = 21/68 (30%), Positives = 29/68 (42%), Gaps = 10/68 (14%) Frame = +1 Query: 130 NPILGLCTGASII----------KKILESIAIAMLRLRSWITR*SFAEVNHHGRWLYECR 279 NP LC SI K LE + I++L ++SW+ F +Y Sbjct: 73 NPQTSLCFSESIPTPSNREETQQKSNLELLRISLLLIQSWLEPVQFLRSVFANSLVYGAS 132 Query: 280 DANVYALL 303 D+NVY LL Sbjct: 133 DSNVYDLL 140
>AT1A1_SHEEP (P04074) Sodium/potassium-transporting ATPase alpha-1 chain precursor| (EC 3.6.3.9) (Sodium pump 1) (Na+/K+ ATPase 1) Length = 1021 Score = 28.9 bits (63), Expect = 5.3 Identities = 11/27 (40%), Positives = 14/27 (51%) Frame = +1 Query: 61 CVGMS*VLHIHMQKQIWWFCKRPNPIL 141 C GM L ++ K WWFC P +L Sbjct: 969 CPGMGVALRMYPLKPTWWFCAFPYSLL 995
>AT1A1_RAT (P06685) Sodium/potassium-transporting ATPase alpha-1 chain precursor| (EC 3.6.3.9) (Sodium pump 1) (Na+/K+ ATPase 1) Length = 1023 Score = 28.9 bits (63), Expect = 5.3 Identities = 11/27 (40%), Positives = 14/27 (51%) Frame = +1 Query: 61 CVGMS*VLHIHMQKQIWWFCKRPNPIL 141 C GM L ++ K WWFC P +L Sbjct: 971 CPGMGAALRMYPLKPTWWFCAFPYSLL 997
>AT1A1_PIG (P05024) Sodium/potassium-transporting ATPase alpha-1 chain precursor| (EC 3.6.3.9) (Sodium pump 1) (Na+/K+ ATPase 1) Length = 1021 Score = 28.9 bits (63), Expect = 5.3 Identities = 11/27 (40%), Positives = 14/27 (51%) Frame = +1 Query: 61 CVGMS*VLHIHMQKQIWWFCKRPNPIL 141 C GM L ++ K WWFC P +L Sbjct: 969 CPGMGVALRMYPLKPTWWFCAFPYSLL 995
>AT1A1_MOUSE (Q8VDN2) Sodium/potassium-transporting ATPase alpha-1 chain precursor| (EC 3.6.3.9) (Sodium pump 1) (Na+/K+ ATPase 1) Length = 1023 Score = 28.9 bits (63), Expect = 5.3 Identities = 11/27 (40%), Positives = 14/27 (51%) Frame = +1 Query: 61 CVGMS*VLHIHMQKQIWWFCKRPNPIL 141 C GM L ++ K WWFC P +L Sbjct: 971 CPGMGAALRMYPLKPTWWFCAFPYSLL 997
>AT1A1_HUMAN (P05023) Sodium/potassium-transporting ATPase alpha-1 chain precursor| (EC 3.6.3.9) (Sodium pump 1) (Na+/K+ ATPase 1) Length = 1023 Score = 28.9 bits (63), Expect = 5.3 Identities = 11/27 (40%), Positives = 14/27 (51%) Frame = +1 Query: 61 CVGMS*VLHIHMQKQIWWFCKRPNPIL 141 C GM L ++ K WWFC P +L Sbjct: 971 CPGMGVALRMYPLKPTWWFCAFPYSLL 997
>AT1A1_HORSE (P18907) Sodium/potassium-transporting ATPase alpha-1 chain precursor| (EC 3.6.3.9) (Sodium pump 1) (Na+/K+ ATPase 1) Length = 1021 Score = 28.9 bits (63), Expect = 5.3 Identities = 11/27 (40%), Positives = 14/27 (51%) Frame = +1 Query: 61 CVGMS*VLHIHMQKQIWWFCKRPNPIL 141 C GM L ++ K WWFC P +L Sbjct: 969 CPGMGVALRMYPLKPTWWFCAFPYSLL 995
>AT1A1_CHICK (P09572) Sodium/potassium-transporting ATPase alpha-1 chain precursor| (EC 3.6.3.9) (Sodium pump 1) (Na+/K+ ATPase 1) Length = 1021 Score = 28.9 bits (63), Expect = 5.3 Identities = 11/27 (40%), Positives = 14/27 (51%) Frame = +1 Query: 61 CVGMS*VLHIHMQKQIWWFCKRPNPIL 141 C GM L ++ K WWFC P +L Sbjct: 969 CPGMDVALRMYPLKPTWWFCAFPYSLL 995
>AT1A1_CANFA (P50997) Sodium/potassium-transporting ATPase alpha-1 chain precursor| (EC 3.6.3.9) (Sodium pump 1) (Na+/K+ ATPase 1) Length = 1021 Score = 28.9 bits (63), Expect = 5.3 Identities = 11/27 (40%), Positives = 14/27 (51%) Frame = +1 Query: 61 CVGMS*VLHIHMQKQIWWFCKRPNPIL 141 C GM L ++ K WWFC P +L Sbjct: 969 CPGMGVALRMYPLKPTWWFCAFPYSLL 995
>AT1A1_BUFMA (P30714) Sodium/potassium-transporting ATPase alpha-1 chain precursor| (EC 3.6.3.9) (Sodium pump 1) (Na+/K+ ATPase 1) Length = 1023 Score = 28.9 bits (63), Expect = 5.3 Identities = 11/27 (40%), Positives = 14/27 (51%) Frame = +1 Query: 61 CVGMS*VLHIHMQKQIWWFCKRPNPIL 141 C GM L ++ K WWFC P +L Sbjct: 971 CPGMDVALRMYPLKPTWWFCAFPYSLL 997
>AT1A2_RAT (P06686) Sodium/potassium-transporting ATPase alpha-2 chain precursor| (EC 3.6.3.9) (Sodium pump 2) (Na+/K+ ATPase 2) (Alpha(+)) Length = 1020 Score = 28.5 bits (62), Expect = 6.9 Identities = 11/27 (40%), Positives = 14/27 (51%) Frame = +1 Query: 61 CVGMS*VLHIHMQKQIWWFCKRPNPIL 141 C GM L ++ K WWFC P +L Sbjct: 968 CPGMGVALRMYPLKVTWWFCAFPYSLL 994
>AT1A2_MOUSE (Q6PIE5) Sodium/potassium-transporting ATPase alpha-2 chain precursor| (EC 3.6.3.9) (Sodium pump 2) (Na+/K+ ATPase 2) (Alpha(+)) Length = 1020 Score = 28.5 bits (62), Expect = 6.9 Identities = 11/27 (40%), Positives = 14/27 (51%) Frame = +1 Query: 61 CVGMS*VLHIHMQKQIWWFCKRPNPIL 141 C GM L ++ K WWFC P +L Sbjct: 968 CPGMGVALRMYPLKVTWWFCAFPYSLL 994
>AT1A2_HUMAN (P50993) Sodium/potassium-transporting ATPase alpha-2 chain precursor| (EC 3.6.3.9) (Sodium pump 2) (Na+/K+ ATPase 2) Length = 1020 Score = 28.5 bits (62), Expect = 6.9 Identities = 11/27 (40%), Positives = 14/27 (51%) Frame = +1 Query: 61 CVGMS*VLHIHMQKQIWWFCKRPNPIL 141 C GM L ++ K WWFC P +L Sbjct: 968 CPGMGVALRMYPLKVTWWFCAFPYSLL 994
>AT1A1_ANGAN (Q92030) Sodium/potassium-transporting ATPase alpha-1 chain precursor| (EC 3.6.3.9) (Sodium pump 1) (Na+/K+ ATPase 1) Length = 1022 Score = 28.5 bits (62), Expect = 6.9 Identities = 11/27 (40%), Positives = 14/27 (51%) Frame = +1 Query: 61 CVGMS*VLHIHMQKQIWWFCKRPNPIL 141 C GM L ++ K WWFC P +L Sbjct: 970 CPGMDVALRMYPLKPSWWFCAFPYSLL 996
>AT1A2_CHICK (P24797) Sodium/potassium-transporting ATPase alpha-2 chain (EC| 3.6.3.9) (Sodium pump 2) (Na+/K+ ATPase 2) Length = 1017 Score = 28.5 bits (62), Expect = 6.9 Identities = 11/27 (40%), Positives = 14/27 (51%) Frame = +1 Query: 61 CVGMS*VLHIHMQKQIWWFCKRPNPIL 141 C GM L ++ K WWFC P +L Sbjct: 965 CPGMGVALRMYPLKVTWWFCAFPYSLL 991
>AT1A1_XENLA (Q92123) Sodium/potassium-transporting ATPase alpha-1 chain (EC| 3.6.3.9) (Sodium pump 1) (Na+/K+ ATPase 1) Length = 1025 Score = 28.1 bits (61), Expect = 9.0 Identities = 10/27 (37%), Positives = 14/27 (51%) Frame = +1 Query: 61 CVGMS*VLHIHMQKQIWWFCKRPNPIL 141 C GM L ++ K WWFC P ++ Sbjct: 973 CPGMDVALRMYPLKPTWWFCAFPYSLI 999
>AT1A1_CATCO (P25489) Sodium/potassium-transporting ATPase alpha-1 chain precursor| (EC 3.6.3.9) (Sodium pump 1) (Na+/K+ ATPase 1) Length = 1027 Score = 28.1 bits (61), Expect = 9.0 Identities = 11/27 (40%), Positives = 14/27 (51%) Frame = +1 Query: 61 CVGMS*VLHIHMQKQIWWFCKRPNPIL 141 C GM L ++ K WWFC P +L Sbjct: 975 CPGMDVALRMYPLKPNWWFCAFPYSLL 1001 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 64,357,269 Number of Sequences: 219361 Number of extensions: 1263506 Number of successful extensions: 3129 Number of sequences better than 10.0: 26 Number of HSP's better than 10.0 without gapping: 3073 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3129 length of database: 80,573,946 effective HSP length: 101 effective length of database: 58,418,485 effective search space used: 2336739400 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
