ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbart22d09 |
|---|---|
| Clone Library Name | barley_pub |
>RL7A_ORYSA (P35685) 60S ribosomal protein L7a| Length = 258 Score = 110 bits (275), Expect = 2e-24 Identities = 54/56 (96%), Positives = 56/56 (100%) Frame = -3 Query: 470 EDKLEFSKILEAIKANFNDKFDEVRKKWGGGVMGSKSQAKTKARERLIAKEAAQRM 303 EDKLEFSKILEAIKANFNDKFDEVRKKWGGGVMGSKSQAKTKARE+L+AKEAAQRM Sbjct: 202 EDKLEFSKILEAIKANFNDKFDEVRKKWGGGVMGSKSQAKTKAREKLLAKEAAQRM 257
>RL7A_ARATH (P49692) 60S ribosomal protein L7a| Length = 257 Score = 107 bits (267), Expect = 2e-23 Identities = 51/57 (89%), Positives = 56/57 (98%) Frame = -3 Query: 470 EDKLEFSKILEAIKANFNDKFDEVRKKWGGGVMGSKSQAKTKARERLIAKEAAQRMN 300 EDKLEFSKILEAIKANFNDK++E RKKWGGG+MGSKSQAKTKA+ER+IAKEAAQRMN Sbjct: 201 EDKLEFSKILEAIKANFNDKYEEYRKKWGGGIMGSKSQAKTKAKERVIAKEAAQRMN 257
>RL7A_DROME (P46223) 60S ribosomal protein L7a| Length = 271 Score = 67.0 bits (162), Expect = 2e-11 Identities = 28/54 (51%), Positives = 40/54 (74%) Frame = -3 Query: 467 DKLEFSKILEAIKANFNDKFDEVRKKWGGGVMGSKSQAKTKARERLIAKEAAQR 306 DK F K+LEA+K NFN++ +E+R+ WGGG++GSKS A+ ER A+E AQ+ Sbjct: 216 DKANFGKVLEAVKTNFNERHEEIRRHWGGGILGSKSLARISKLERAKARELAQK 269
>RL7A_FUGRU (O57592) 60S ribosomal protein L7a (Surfeit locus protein 3)| Length = 265 Score = 63.2 bits (152), Expect = 3e-10 Identities = 26/56 (46%), Positives = 41/56 (73%) Frame = -3 Query: 470 EDKLEFSKILEAIKANFNDKFDEVRKKWGGGVMGSKSQAKTKARERLIAKEAAQRM 303 EDK +K++EAIK N+ND+++E+R+ WGGG++G KS A+ E+ AKE A ++ Sbjct: 209 EDKGALAKLVEAIKTNYNDRYEEIRRHWGGGILGPKSTARINKLEKAKAKELATKL 264
>RL7A_CHICK (P32429) 60S ribosomal protein L7a| Length = 265 Score = 61.6 bits (148), Expect = 1e-09 Identities = 26/56 (46%), Positives = 40/56 (71%) Frame = -3 Query: 470 EDKLEFSKILEAIKANFNDKFDEVRKKWGGGVMGSKSQAKTKARERLIAKEAAQRM 303 EDK +K++EA+K N+ND++DE+R+ WGG V+G KS A+ E+ AKE A ++ Sbjct: 209 EDKGALAKLVEAVKTNYNDRYDEIRRHWGGNVLGPKSVARIAKLEKAKAKELATKL 264
>RL7A_RAT (P62425) 60S ribosomal protein L7a| Length = 265 Score = 60.8 bits (146), Expect = 2e-09 Identities = 26/56 (46%), Positives = 40/56 (71%) Frame = -3 Query: 470 EDKLEFSKILEAIKANFNDKFDEVRKKWGGGVMGSKSQAKTKARERLIAKEAAQRM 303 EDK +K++EAI+ N+ND++DE+R+ WGG V+G KS A+ E+ AKE A ++ Sbjct: 209 EDKGALAKLVEAIRTNYNDRYDEIRRHWGGNVLGPKSVARIAKLEKAKAKELATKL 264
>RL7A_MOUSE (P12970) 60S ribosomal protein L7a (Surfeit locus protein 3)| Length = 265 Score = 60.8 bits (146), Expect = 2e-09 Identities = 26/56 (46%), Positives = 40/56 (71%) Frame = -3 Query: 470 EDKLEFSKILEAIKANFNDKFDEVRKKWGGGVMGSKSQAKTKARERLIAKEAAQRM 303 EDK +K++EAI+ N+ND++DE+R+ WGG V+G KS A+ E+ AKE A ++ Sbjct: 209 EDKGALAKLVEAIRTNYNDRYDEIRRHWGGNVLGPKSVARIAKLEKAKAKELATKL 264
>RL7A_HUMAN (P62424) 60S ribosomal protein L7a (Surfeit locus protein 3) (PLA-X| polypeptide) Length = 265 Score = 60.8 bits (146), Expect = 2e-09 Identities = 26/56 (46%), Positives = 40/56 (71%) Frame = -3 Query: 470 EDKLEFSKILEAIKANFNDKFDEVRKKWGGGVMGSKSQAKTKARERLIAKEAAQRM 303 EDK +K++EAI+ N+ND++DE+R+ WGG V+G KS A+ E+ AKE A ++ Sbjct: 209 EDKGALAKLVEAIRTNYNDRYDEIRRHWGGNVLGPKSVARIAKLEKAKAKELATKL 264
>RL7A_ICTPU (Q90YW2) 60S ribosomal protein L7a| Length = 265 Score = 60.1 bits (144), Expect = 3e-09 Identities = 24/56 (42%), Positives = 39/56 (69%) Frame = -3 Query: 470 EDKLEFSKILEAIKANFNDKFDEVRKKWGGGVMGSKSQAKTKARERLIAKEAAQRM 303 ED+ +K++EAIK N+ND+++E+R+ WGG +MG KS A+ E+ KE A ++ Sbjct: 209 EDRAALAKLVEAIKTNYNDRYEEIRRHWGGNIMGPKSTARIAKLEKAKGKELATKL 264
>RL7A_ANOGA (O76732) 60S ribosomal protein L7a| Length = 271 Score = 58.9 bits (141), Expect = 6e-09 Identities = 24/54 (44%), Positives = 37/54 (68%) Frame = -3 Query: 467 DKLEFSKILEAIKANFNDKFDEVRKKWGGGVMGSKSQAKTKARERLIAKEAAQR 306 DK +K++E IK NFND+FD++R+ WGGG++G KS A+ E+ +E Q+ Sbjct: 217 DKPNLAKLVETIKTNFNDRFDDIRRHWGGGLLGPKSMARLAKLEKAKKREMLQK 270
>RL8B_YEAST (P29453) 60S ribosomal protein L8-B (L7A-1) (L4-1) (YL5) (RP6)| Length = 255 Score = 56.6 bits (135), Expect = 3e-08 Identities = 23/46 (50%), Positives = 34/46 (73%) Frame = -3 Query: 470 EDKLEFSKILEAIKANFNDKFDEVRKKWGGGVMGSKSQAKTKARER 333 ED+ +K++ I ANF DK+DEV+K WGGG++G+K+QAK R + Sbjct: 205 EDEAALAKLVSTIDANFADKYDEVKKHWGGGILGNKAQAKMDKRAK 250
>RL8A_YEAST (P17076) 60S ribosomal protein L8-A (L7A-2) (L4-2) (YL5) (RP6)| (Maintenance of killer protein 7) Length = 255 Score = 56.6 bits (135), Expect = 3e-08 Identities = 23/46 (50%), Positives = 34/46 (73%) Frame = -3 Query: 470 EDKLEFSKILEAIKANFNDKFDEVRKKWGGGVMGSKSQAKTKARER 333 ED+ +K++ I ANF DK+DEV+K WGGG++G+K+QAK R + Sbjct: 205 EDEAALAKLVSTIDANFADKYDEVKKHWGGGILGNKAQAKMDKRAK 250
>RL8_SCHPO (O13672) 60S ribosomal protein L8 (L7A) (L4)| Length = 258 Score = 56.6 bits (135), Expect = 3e-08 Identities = 25/49 (51%), Positives = 34/49 (69%) Frame = -3 Query: 470 EDKLEFSKILEAIKANFNDKFDEVRKKWGGGVMGSKSQAKTKARERLIA 324 EDK E + I+ A+ ANF+ K+DE R+KWGGG+MG K+QA R + A Sbjct: 205 EDKNELASIVSAVDANFSAKYDESRRKWGGGIMGGKTQALLAKRAKAAA 253
>RL7A_CAEEL (Q966C6) 60S ribosomal protein L7a| Length = 264 Score = 53.5 bits (127), Expect = 3e-07 Identities = 23/51 (45%), Positives = 35/51 (68%) Frame = -3 Query: 470 EDKLEFSKILEAIKANFNDKFDEVRKKWGGGVMGSKSQAKTKARERLIAKE 318 EDK +K++E + NF+++ +E+RK WGGGVM +KS AK ER A++ Sbjct: 210 EDKSALNKLVETVNNNFSERHEEIRKHWGGGVMSAKSDAKKLKIERARARD 260
>NU1M_ASCSU (P24875) NADH-ubiquinone oxidoreductase chain 1 (EC 1.6.5.3) (NADH| dehydrogenase subunit 1) Length = 290 Score = 35.0 bits (79), Expect = 0.097 Identities = 19/43 (44%), Positives = 25/43 (58%) Frame = -2 Query: 249 STVESYCGFLILCSVRQTYAKIR*GLPMFGFYIVLCPVSVQYL 121 S V YC F IL VR +Y + R L M+ F+ L PVS+ +L Sbjct: 240 SYVVIYCMFTILVFVRSSYPRFRYDLMMYFFWFKLLPVSLIFL 282
>DRL26_ARATH (Q84WD3) Probable disease resistance protein At4g19060| Length = 383 Score = 30.8 bits (68), Expect = 1.8 Identities = 17/39 (43%), Positives = 24/39 (61%), Gaps = 1/39 (2%) Frame = -3 Query: 470 EDKLEFSKILEAIKANFNDKFDEVRKKWGGGVM-GSKSQ 357 E K EF K LE IK++FN++++ KW G GS S+ Sbjct: 16 ESKSEFDKELEKIKSSFNEEYE----KWSSGKQRGSSSK 50
>LGR8_HUMAN (Q8WXD0) Relaxin receptor 2 (Leucine-rich repeat-containing| G-protein coupled receptor 8) (G-protein coupled receptor affecting testicular descent) (G-protein coupled receptor 106) Length = 754 Score = 29.3 bits (64), Expect = 5.3 Identities = 13/44 (29%), Positives = 25/44 (56%) Frame = -1 Query: 247 HCGIVLWFPDSLFRSPDLCKDQMRFTHVWILYSFMSCFGSIFVV 116 H I + D + DL + + VW++ +F++CFG++FV+ Sbjct: 395 HVRICMPLTDGISSFEDLLANNILRIFVWVI-AFITCFGNLFVI 437
>LGR8_CANFA (Q5XM32) Relaxin receptor 2 (Leucine-rich repeat-containing| G-protein coupled receptor 8) (INSL3 receptor) Length = 737 Score = 29.3 bits (64), Expect = 5.3 Identities = 13/44 (29%), Positives = 25/44 (56%) Frame = -1 Query: 247 HCGIVLWFPDSLFRSPDLCKDQMRFTHVWILYSFMSCFGSIFVV 116 H I + D + DL + + VW++ +F++CFG++FV+ Sbjct: 378 HVRICMPLTDGISSFEDLLANNILRIFVWVI-AFITCFGNLFVI 420
>PYRG_AZOBR (P28595) CTP synthase (EC 6.3.4.2) (UTP--ammonia ligase) (CTP| synthetase) Length = 544 Score = 28.9 bits (63), Expect = 6.9 Identities = 17/45 (37%), Positives = 25/45 (55%), Gaps = 1/45 (2%) Frame = +2 Query: 161 PNMGKPHLIFA*VWRT-EQRIRKPQYDSTVLLKGNYMAYALTYKS 292 P GKP L W + +R+RKPQ + T+ + G Y + +YKS Sbjct: 266 PTEGKPDLSR---WTSIVERVRKPQGEVTIAVVGKYTSLLDSYKS 307
>VP8_WTV (P17380) Outer capsid protein P8 (Structural protein P8)| Length = 427 Score = 28.5 bits (62), Expect = 9.1 Identities = 12/40 (30%), Positives = 25/40 (62%) Frame = -1 Query: 241 GIVLWFPDSLFRSPDLCKDQMRFTHVWILYSFMSCFGSIF 122 G++L F D ++ +L ++ H+W++YSF++ FG + Sbjct: 388 GVILSFID---QNINLQTRRLMVRHLWVIYSFIAVFGRYY 424 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 58,385,440 Number of Sequences: 219361 Number of extensions: 1122705 Number of successful extensions: 2919 Number of sequences better than 10.0: 20 Number of HSP's better than 10.0 without gapping: 2870 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2919 length of database: 80,573,946 effective HSP length: 103 effective length of database: 57,979,763 effective search space used: 3072927439 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
