Clone Name | rbart22d03 |
---|---|
Clone Library Name | barley_pub |
>gb|AY108848.1| Zea mays PCO063380 mRNA sequence Length = 604 Score = 149 bits (75), Expect = 1e-32 Identities = 129/147 (87%) Strand = Plus / Minus Query: 250 ggatttactcgcaggccagcttcgtgtcgaagctgctcaggcacatggcgaaggcctgga 309 ||||||| |||||||||| ||| |||||||||||||||||||| |||||||||||||||| Sbjct: 221 ggatttattcgcaggccaacttggtgtcgaagctgctcaggcagatggcgaaggcctgga 162 Query: 310 acgccgacagcgggtagcggtagtccatggtgaacatgtccttggacaccttgccgaact 369 | || ||||||||||||| ||||||||||||||| ||||||||| ||||| || |||| Sbjct: 161 aggctgacagcgggtagcagtagtccatggtgaagatgtccttgccgaccttcccaaact 102 Query: 370 gcaggatgatcttgtcctgctccggcg 396 |||| |||| ||| || || ||||||| Sbjct: 101 gcagtatgaccttctcttggtccggcg 75
>gb|BT016712.1| Zea mays clone Contig545 mRNA sequence Length = 1715 Score = 145 bits (73), Expect = 2e-31 Identities = 112/125 (89%) Strand = Plus / Minus Query: 250 ggatttactcgcaggccagcttcgtgtcgaagctgctcaggcacatggcgaaggcctgga 309 ||||||| |||||||||| ||| |||||||||||||||||||| |||||||||||||||| Sbjct: 1274 ggatttattcgcaggccaacttggtgtcgaagctgctcaggcagatggcgaaggcctgga 1215 Query: 310 acgccgacagcgggtagcggtagtccatggtgaacatgtccttggacaccttgccgaact 369 | || ||||||||||||| ||||||||||||||| ||||||||| ||||| || |||| Sbjct: 1214 aggctgacagcgggtagcagtagtccatggtgaagatgtccttgccgaccttcccaaact 1155 Query: 370 gcagg 374 ||||| Sbjct: 1154 gcagg 1150
>gb|AY109994.1| Zea mays CL768_1 mRNA sequence Length = 1906 Score = 141 bits (71), Expect = 2e-30 Identities = 107/119 (89%) Strand = Plus / Minus Query: 258 tcgcaggccagcttcgtgtcgaagctgctcaggcacatggcgaaggcctggaacgccgac 317 |||||||||||||| |||||||||||||||||||| || |||||||||||||| || ||| Sbjct: 1472 tcgcaggccagcttggtgtcgaagctgctcaggcagatcgcgaaggcctggaaggctgac 1413 Query: 318 agcgggtagcggtagtccatggtgaacatgtccttggacaccttgccgaactgcaggat 376 || ||||| |||||||||||||||||||||||||| | |||||| || || |||||||| Sbjct: 1412 agtgggtaacggtagtccatggtgaacatgtccttagccaccttcccaaattgcaggat 1354
>gb|BT018492.1| Zea mays clone EL01N0425D06.d mRNA sequence Length = 1326 Score = 127 bits (64), Expect = 4e-26 Identities = 100/112 (89%) Strand = Plus / Minus Query: 265 ccagcttcgtgtcgaagctgctcaggcacatggcgaaggcctggaacgccgacagcgggt 324 ||||||| ||||||||||| |||| || ||||||||||||||||| ||||||||||||| Sbjct: 1108 ccagcttggtgtcgaagctcgtcagacatatggcgaaggcctggaaggccgacagcgggt 1049 Query: 325 agcggtagtccatggtgaacatgtccttggacaccttgccgaactgcaggat 376 | |||||||||||||||||||||||| | |||||||||||||||||||| Sbjct: 1048 accggtagtccatggtgaacatgtccctcccgaccttgccgaactgcaggat 997
>dbj|AK120706.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023001B21, full insert sequence Length = 3119 Score = 103 bits (52), Expect = 5e-19 Identities = 103/120 (85%) Strand = Plus / Minus Query: 264 gccagcttcgtgtcgaagctgctcaggcacatggcgaaggcctggaacgccgacagcggg 323 |||||||| |||||||||||| ||| || |||||||| |||||||| || || || ||| Sbjct: 1836 gccagcttggtgtcgaagctggtcaaacagatggcgaaagcctggaatgctgagagaggg 1777 Query: 324 tagcggtagtccatggtgaacatgtccttggacaccttgccgaactgcaggatgatcttg 383 || ||||||||||||||||||||||||||| ||||| || ||||||||||| |||||| Sbjct: 1776 taccggtagtccatggtgaacatgtccttgccaaccttaccaaactgcaggatcatcttg 1717
>gb|AC120533.4| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBa0081F16 map E50055S, complete sequence Length = 148220 Score = 99.6 bits (50), Expect = 8e-18 Identities = 113/134 (84%) Strand = Plus / Minus Query: 258 tcgcaggccagcttcgtgtcgaagctgctcaggcacatggcgaaggcctggaacgccgac 317 |||||||||||||| |||||||| || |||||| | || || || |||||||| || || Sbjct: 87761 tcgcaggccagcttggtgtcgaaactactcagggagatagcaaatgcctggaaggctgag 87702 Query: 318 agcgggtagcggtagtccatggtgaacatgtccttggacaccttgccgaactgcaggatg 377 ||||||||| |||| |||||||||||||||||||||| ||||| ||||| ||||| ||| Sbjct: 87701 agcgggtagtggtaatccatggtgaacatgtccttggcaaccttcccgaattgcagtatg 87642 Query: 378 atcttgtcctgctc 391 | ||| || ||||| Sbjct: 87641 accttatcatgctc 87628
>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete sequence Length = 28386948 Score = 99.6 bits (50), Expect = 8e-18 Identities = 113/134 (84%) Strand = Plus / Minus Query: 258 tcgcaggccagcttcgtgtcgaagctgctcaggcacatggcgaaggcctggaacgccgac 317 |||||||||||||| |||||||| || |||||| | || || || |||||||| || || Sbjct: 3082391 tcgcaggccagcttggtgtcgaaactactcagggagatagcaaatgcctggaaggctgag 3082332 Query: 318 agcgggtagcggtagtccatggtgaacatgtccttggacaccttgccgaactgcaggatg 377 ||||||||| |||| |||||||||||||||||||||| ||||| ||||| ||||| ||| Sbjct: 3082331 agcgggtagtggtaatccatggtgaacatgtccttggcaaccttcccgaattgcagtatg 3082272 Query: 378 atcttgtcctgctc 391 | ||| || ||||| Sbjct: 3082271 accttatcatgctc 3082258
>dbj|AK070139.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023042K06, full insert sequence Length = 2073 Score = 99.6 bits (50), Expect = 8e-18 Identities = 113/134 (84%) Strand = Plus / Minus Query: 258 tcgcaggccagcttcgtgtcgaagctgctcaggcacatggcgaaggcctggaacgccgac 317 |||||||||||||| |||||||| || |||||| | || || || |||||||| || || Sbjct: 1746 tcgcaggccagcttggtgtcgaaactactcagggagatagcaaatgcctggaaggctgag 1687 Query: 318 agcgggtagcggtagtccatggtgaacatgtccttggacaccttgccgaactgcaggatg 377 ||||||||| |||| |||||||||||||||||||||| ||||| ||||| ||||| ||| Sbjct: 1686 agcgggtagtggtaatccatggtgaacatgtccttggcaaccttcccgaattgcagtatg 1627 Query: 378 atcttgtcctgctc 391 | ||| || ||||| Sbjct: 1626 accttatcatgctc 1613
>gb|AY106234.1| Zea mays PCO071899 mRNA sequence Length = 1449 Score = 99.6 bits (50), Expect = 8e-18 Identities = 107/126 (84%) Strand = Plus / Minus Query: 268 gcttcgtgtcgaagctgctcaggcacatggcgaaggcctggaacgccgacagcgggtagc 327 |||| |||||||||||| ||||||| || |||||||||||||||||||| || ||||| | Sbjct: 1160 gcttggtgtcgaagctggtcaggcagatcgcgaaggcctggaacgccgagagtgggtacc 1101 Query: 328 ggtagtccatggtgaacatgtccttggacaccttgccgaactgcaggatgatcttgtcct 387 |||||||||||||||| || ||||| | ||| |||||||| ||||| | ||| |||| Sbjct: 1100 ggtagtccatggtgaatatatccttcccgatcttcccgaactggaggatcaccttctcct 1041 Query: 388 gctccg 393 |||||| Sbjct: 1040 gctccg 1035
>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence Length = 28369397 Score = 99.6 bits (50), Expect = 8e-18 Identities = 113/134 (84%) Strand = Plus / Minus Query: 258 tcgcaggccagcttcgtgtcgaagctgctcaggcacatggcgaaggcctggaacgccgac 317 |||||||||||||| |||||||| || |||||| | || || || |||||||| || || Sbjct: 3091422 tcgcaggccagcttggtgtcgaaactactcagggagatagcaaatgcctggaaggctgag 3091363 Query: 318 agcgggtagcggtagtccatggtgaacatgtccttggacaccttgccgaactgcaggatg 377 ||||||||| |||| |||||||||||||||||||||| ||||| ||||| ||||| ||| Sbjct: 3091362 agcgggtagtggtaatccatggtgaacatgtccttggcaaccttcccgaattgcagtatg 3091303 Query: 378 atcttgtcctgctc 391 | ||| || ||||| Sbjct: 3091302 accttatcatgctc 3091289
>ref|XM_479670.1| Oryza sativa (japonica cultivar-group), mRNA Length = 2127 Score = 97.6 bits (49), Expect = 3e-17 Identities = 97/113 (85%) Strand = Plus / Minus Query: 264 gccagcttcgtgtcgaagctgctcaggcacatggcgaaggcctggaacgccgacagcggg 323 |||||||| |||||||||||| ||| || |||||||| |||||||| || || || ||| Sbjct: 1835 gccagcttggtgtcgaagctggtcaaacagatggcgaaagcctggaatgctgagagaggg 1776 Query: 324 tagcggtagtccatggtgaacatgtccttggacaccttgccgaactgcaggat 376 || ||||||||||||||||||||||||||| ||||| || ||||||||||| Sbjct: 1775 taccggtagtccatggtgaacatgtccttgccaaccttaccaaactgcaggat 1723
>ref|XM_506618.1| PREDICTED Oryza sativa (japonica cultivar-group), P0015C07.29 mRNA Length = 3119 Score = 97.6 bits (49), Expect = 3e-17 Identities = 97/113 (85%) Strand = Plus / Minus Query: 264 gccagcttcgtgtcgaagctgctcaggcacatggcgaaggcctggaacgccgacagcggg 323 |||||||| |||||||||||| ||| || |||||||| |||||||| || || || ||| Sbjct: 1836 gccagcttggtgtcgaagctggtcaaacagatggcgaaagcctggaatgctgagagaggg 1777 Query: 324 tagcggtagtccatggtgaacatgtccttggacaccttgccgaactgcaggat 376 || ||||||||||||||||||||||||||| ||||| || ||||||||||| Sbjct: 1776 taccggtagtccatggtgaacatgtccttgccaaccttaccaaactgcaggat 1724
>gb|BT018325.1| Zea mays clone EL01T0208B12.c mRNA sequence Length = 1103 Score = 97.6 bits (49), Expect = 3e-17 Identities = 76/85 (89%) Strand = Plus / Minus Query: 268 gcttcgtgtcgaagctgctcaggcacatggcgaaggcctggaacgccgacagcgggtagc 327 |||| |||||||||||| ||||||| || |||||||||||||||||||| || ||||| | Sbjct: 903 gcttggtgtcgaagctggtcaggcagatcgcgaaggcctggaacgccgagagtgggtacc 844 Query: 328 ggtagtccatggtgaacatgtcctt 352 |||||||||||||||| || ||||| Sbjct: 843 ggtagtccatggtgaatatatcctt 819
>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete sequence Length = 28434780 Score = 97.6 bits (49), Expect = 3e-17 Identities = 97/113 (85%) Strand = Plus / Minus Query: 264 gccagcttcgtgtcgaagctgctcaggcacatggcgaaggcctggaacgccgacagcggg 323 |||||||| |||||||||||| ||| || |||||||| |||||||| || || || ||| Sbjct: 184152 gccagcttggtgtcgaagctggtcaaacagatggcgaaagcctggaatgctgagagaggg 184093 Query: 324 tagcggtagtccatggtgaacatgtccttggacaccttgccgaactgcaggat 376 || ||||||||||||||||||||||||||| ||||| || ||||||||||| Sbjct: 184092 taccggtagtccatggtgaacatgtccttgccaaccttaccaaactgcaggat 184040
>dbj|AP004654.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC clone:P0015C07 Length = 149079 Score = 97.6 bits (49), Expect = 3e-17 Identities = 97/113 (85%) Strand = Plus / Minus Query: 264 gccagcttcgtgtcgaagctgctcaggcacatggcgaaggcctggaacgccgacagcggg 323 |||||||| |||||||||||| ||| || |||||||| |||||||| || || || ||| Sbjct: 99487 gccagcttggtgtcgaagctggtcaaacagatggcgaaagcctggaatgctgagagaggg 99428 Query: 324 tagcggtagtccatggtgaacatgtccttggacaccttgccgaactgcaggat 376 || ||||||||||||||||||||||||||| ||||| || ||||||||||| Sbjct: 99427 taccggtagtccatggtgaacatgtccttgccaaccttaccaaactgcaggat 99375
>dbj|AK104486.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-302-A09, full insert sequence Length = 1233 Score = 97.6 bits (49), Expect = 3e-17 Identities = 97/113 (85%) Strand = Plus / Minus Query: 264 gccagcttcgtgtcgaagctgctcaggcacatggcgaaggcctggaacgccgacagcggg 323 |||||||| |||||||||||| ||| || |||||||| |||||||| || || || ||| Sbjct: 962 gccagcttggtgtcgaagctggtcaaacagatggcgaaagcctggaatgctgagagaggg 903 Query: 324 tagcggtagtccatggtgaacatgtccttggacaccttgccgaactgcaggat 376 || ||||||||||||||||||||||||||| ||||| || ||||||||||| Sbjct: 902 taccggtagtccatggtgaacatgtccttgccaaccttaccaaactgcaggat 850
>dbj|AK100078.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023001J17, full insert sequence Length = 2129 Score = 97.6 bits (49), Expect = 3e-17 Identities = 97/113 (85%) Strand = Plus / Minus Query: 264 gccagcttcgtgtcgaagctgctcaggcacatggcgaaggcctggaacgccgacagcggg 323 |||||||| |||||||||||| ||| || |||||||| |||||||| || || || ||| Sbjct: 1837 gccagcttggtgtcgaagctggtcaaacagatggcgaaagcctggaatgctgagagaggg 1778 Query: 324 tagcggtagtccatggtgaacatgtccttggacaccttgccgaactgcaggat 376 || ||||||||||||||||||||||||||| ||||| || ||||||||||| Sbjct: 1777 taccggtagtccatggtgaacatgtccttgccaaccttaccaaactgcaggat 1725
>dbj|AK060879.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-035-A08, full insert sequence Length = 1233 Score = 97.6 bits (49), Expect = 3e-17 Identities = 97/113 (85%) Strand = Plus / Minus Query: 264 gccagcttcgtgtcgaagctgctcaggcacatggcgaaggcctggaacgccgacagcggg 323 |||||||| |||||||||||| ||| || |||||||| |||||||| || || || ||| Sbjct: 962 gccagcttggtgtcgaagctggtcaaacagatggcgaaagcctggaatgctgagagaggg 903 Query: 324 tagcggtagtccatggtgaacatgtccttggacaccttgccgaactgcaggat 376 || ||||||||||||||||||||||||||| ||||| || ||||||||||| Sbjct: 902 taccggtagtccatggtgaacatgtccttgccaaccttaccaaactgcaggat 850
>gb|AY111565.1| Zea mays CL11715_1 mRNA sequence Length = 586 Score = 85.7 bits (43), Expect = 1e-13 Identities = 73/83 (87%) Strand = Plus / Plus Query: 294 atggcgaaggcctggaacgccgacagcgggtagcggtagtccatggtgaacatgtccttg 353 ||||||||||||||||| ||||| || ||||| ||||||||||| ||||||||||| ||| Sbjct: 388 atggcgaaggcctggaatgccgagagtgggtatcggtagtccatagtgaacatgtcattg 447 Query: 354 gacaccttgccgaactgcaggat 376 | ||||| || ||||||||||| Sbjct: 448 gcgaccttaccaaactgcaggat 470
>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete sequence Length = 27566993 Score = 77.8 bits (39), Expect = 3e-11 Identities = 81/95 (85%) Strand = Plus / Plus Query: 258 tcgcaggccagcttcgtgtcgaagctgctcaggcacatggcgaaggcctggaacgccgac 317 |||||||||||||| |||||||| || |||| ||| || || ||||||||||| ||||| Sbjct: 3212011 tcgcaggccagcttggtgtcgaaactactcaagcagattgcaaaggcctggaaggccgaa 3212070 Query: 318 agcgggtagcggtagtccatggtgaacatgtcctt 352 || ||||| || |||||||| |||||||| ||||| Sbjct: 3212071 agggggtaacgatagtccattgtgaacatatcctt 3212105
>dbj|AK102298.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033089L13, full insert sequence Length = 1941 Score = 77.8 bits (39), Expect = 3e-11 Identities = 81/95 (85%) Strand = Plus / Minus Query: 258 tcgcaggccagcttcgtgtcgaagctgctcaggcacatggcgaaggcctggaacgccgac 317 |||||||||||||| |||||||| || |||| ||| || || ||||||||||| ||||| Sbjct: 1508 tcgcaggccagcttggtgtcgaaactactcaagcagattgcaaaggcctggaaggccgaa 1449 Query: 318 agcgggtagcggtagtccatggtgaacatgtcctt 352 || ||||| || |||||||| |||||||| ||||| Sbjct: 1448 agggggtaacgatagtccattgtgaacatatcctt 1414
>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence Length = 27492551 Score = 77.8 bits (39), Expect = 3e-11 Identities = 81/95 (85%) Strand = Plus / Plus Query: 258 tcgcaggccagcttcgtgtcgaagctgctcaggcacatggcgaaggcctggaacgccgac 317 |||||||||||||| |||||||| || |||| ||| || || ||||||||||| ||||| Sbjct: 3211956 tcgcaggccagcttggtgtcgaaactactcaagcagattgcaaaggcctggaaggccgaa 3212015 Query: 318 agcgggtagcggtagtccatggtgaacatgtcctt 352 || ||||| || |||||||| |||||||| ||||| Sbjct: 3212016 agggggtaacgatagtccattgtgaacatatcctt 3212050
>emb|AL713936.4|CNS07YPH Oryza sativa chromosome 12, . BAC OJ1057_G11 of library Monsanto from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 109081 Score = 77.8 bits (39), Expect = 3e-11 Identities = 81/95 (85%) Strand = Plus / Plus Query: 258 tcgcaggccagcttcgtgtcgaagctgctcaggcacatggcgaaggcctggaacgccgac 317 |||||||||||||| |||||||| || |||| ||| || || ||||||||||| ||||| Sbjct: 2397 tcgcaggccagcttggtgtcgaaactactcaagcagattgcaaaggcctggaaggccgaa 2456 Query: 318 agcgggtagcggtagtccatggtgaacatgtcctt 352 || ||||| || |||||||| |||||||| ||||| Sbjct: 2457 agggggtaacgatagtccattgtgaacatatcctt 2491
>emb|AL713906.3|CNS07YQ6 Oryza sativa chromosome 12, . BAC OJ1587_D05 of library Monsanto from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 90756 Score = 77.8 bits (39), Expect = 3e-11 Identities = 81/95 (85%) Strand = Plus / Minus Query: 258 tcgcaggccagcttcgtgtcgaagctgctcaggcacatggcgaaggcctggaacgccgac 317 |||||||||||||| |||||||| || |||| ||| || || ||||||||||| ||||| Sbjct: 5653 tcgcaggccagcttggtgtcgaaactactcaagcagattgcaaaggcctggaaggccgaa 5594 Query: 318 agcgggtagcggtagtccatggtgaacatgtcctt 352 || ||||| || |||||||| |||||||| ||||| Sbjct: 5593 agggggtaacgatagtccattgtgaacatatcctt 5559
>ref|XM_474442.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1389 Score = 73.8 bits (37), Expect = 5e-10 Identities = 94/113 (83%) Strand = Plus / Minus Query: 264 gccagcttcgtgtcgaagctgctcaggcacatggcgaaggcctggaacgccgacagcggg 323 |||||||| ||||| |||||| ||| || || || || |||||||| ||||||| ||| Sbjct: 1379 gccagcttggtgtcaaagctggtcaaacagatagcaaaagcctggaaggccgacaatggg 1320 Query: 324 tagcggtagtccatggtgaacatgtccttggacaccttgccgaactgcaggat 376 || ||||| |||||||||||||||||||| | || |||||||| |||||||| Sbjct: 1319 taccggtaatccatggtgaacatgtcctttgcaactttgccgaattgcaggat 1267
>emb|AJ245900.1|OSA245900 Oryza sativa chromosome 4 BAC q3037-207F1 complete genome Length = 124321 Score = 73.8 bits (37), Expect = 5e-10 Identities = 94/113 (83%) Strand = Plus / Plus Query: 264 gccagcttcgtgtcgaagctgctcaggcacatggcgaaggcctggaacgccgacagcggg 323 |||||||| ||||| |||||| ||| || || || || |||||||| ||||||| ||| Sbjct: 98444 gccagcttggtgtcaaagctggtcaaacagatagcaaaagcctggaaggccgacaatggg 98503 Query: 324 tagcggtagtccatggtgaacatgtccttggacaccttgccgaactgcaggat 376 || ||||| |||||||||||||||||||| | || |||||||| |||||||| Sbjct: 98504 taccggtaatccatggtgaacatgtcctttgcaactttgccgaattgcaggat 98556
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete sequence Length = 35498469 Score = 73.8 bits (37), Expect = 5e-10 Identities = 94/113 (83%) Strand = Plus / Minus Query: 264 gccagcttcgtgtcgaagctgctcaggcacatggcgaaggcctggaacgccgacagcggg 323 |||||||| ||||| |||||| ||| || || || || |||||||| ||||||| ||| Sbjct: 35214606 gccagcttggtgtcaaagctggtcaaacagatagcaaaagcctggaaggccgacaatggg 35214547 Query: 324 tagcggtagtccatggtgaacatgtccttggacaccttgccgaactgcaggat 376 || ||||| |||||||||||||||||||| | || |||||||| |||||||| Sbjct: 35214546 taccggtaatccatggtgaacatgtcctttgcaactttgccgaattgcaggat 35214494
>dbj|AK104333.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-032-G06, full insert sequence Length = 1800 Score = 73.8 bits (37), Expect = 5e-10 Identities = 94/113 (83%) Strand = Plus / Minus Query: 264 gccagcttcgtgtcgaagctgctcaggcacatggcgaaggcctggaacgccgacagcggg 323 |||||||| ||||| |||||| ||| || || || || |||||||| ||||||| ||| Sbjct: 1498 gccagcttggtgtcaaagctggtcaaacagatagcaaaagcctggaaggccgacaatggg 1439 Query: 324 tagcggtagtccatggtgaacatgtccttggacaccttgccgaactgcaggat 376 || ||||| |||||||||||||||||||| | || |||||||| |||||||| Sbjct: 1438 taccggtaatccatggtgaacatgtcctttgcaactttgccgaattgcaggat 1386
>dbj|AK098928.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013023N16, full insert sequence Length = 1826 Score = 73.8 bits (37), Expect = 5e-10 Identities = 94/113 (83%) Strand = Plus / Minus Query: 264 gccagcttcgtgtcgaagctgctcaggcacatggcgaaggcctggaacgccgacagcggg 323 |||||||| ||||| |||||| ||| || || || || |||||||| ||||||| ||| Sbjct: 1534 gccagcttggtgtcaaagctggtcaaacagatagcaaaagcctggaaggccgacaatggg 1475 Query: 324 tagcggtagtccatggtgaacatgtccttggacaccttgccgaactgcaggat 376 || ||||| |||||||||||||||||||| | || |||||||| |||||||| Sbjct: 1474 taccggtaatccatggtgaacatgtcctttgcaactttgccgaattgcaggat 1422
>dbj|AK066910.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013091C11, full insert sequence Length = 1824 Score = 73.8 bits (37), Expect = 5e-10 Identities = 94/113 (83%) Strand = Plus / Minus Query: 264 gccagcttcgtgtcgaagctgctcaggcacatggcgaaggcctggaacgccgacagcggg 323 |||||||| ||||| |||||| ||| || || || || |||||||| ||||||| ||| Sbjct: 1536 gccagcttggtgtcaaagctggtcaaacagatagcaaaagcctggaaggccgacaatggg 1477 Query: 324 tagcggtagtccatggtgaacatgtccttggacaccttgccgaactgcaggat 376 || ||||| |||||||||||||||||||| | || |||||||| |||||||| Sbjct: 1476 taccggtaatccatggtgaacatgtcctttgcaactttgccgaattgcaggat 1424
>emb|AL732348.2| Oryza sativa genomic DNA, chromosome 4, BAC clone: H0701F11, complete sequence Length = 82895 Score = 73.8 bits (37), Expect = 5e-10 Identities = 94/113 (83%) Strand = Plus / Minus Query: 264 gccagcttcgtgtcgaagctgctcaggcacatggcgaaggcctggaacgccgacagcggg 323 |||||||| ||||| |||||| ||| || || || || |||||||| ||||||| ||| Sbjct: 58603 gccagcttggtgtcaaagctggtcaaacagatagcaaaagcctggaaggccgacaatggg 58544 Query: 324 tagcggtagtccatggtgaacatgtccttggacaccttgccgaactgcaggat 376 || ||||| |||||||||||||||||||| | || |||||||| |||||||| Sbjct: 58543 taccggtaatccatggtgaacatgtcctttgcaactttgccgaattgcaggat 58491
>emb|AL606637.3|OSJN00076 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0039K24, complete sequence Length = 173770 Score = 73.8 bits (37), Expect = 5e-10 Identities = 94/113 (83%) Strand = Plus / Minus Query: 264 gccagcttcgtgtcgaagctgctcaggcacatggcgaaggcctggaacgccgacagcggg 323 |||||||| ||||| |||||| ||| || || || || |||||||| ||||||| ||| Sbjct: 10452 gccagcttggtgtcaaagctggtcaaacagatagcaaaagcctggaaggccgacaatggg 10393 Query: 324 tagcggtagtccatggtgaacatgtccttggacaccttgccgaactgcaggat 376 || ||||| |||||||||||||||||||| | || |||||||| |||||||| Sbjct: 10392 taccggtaatccatggtgaacatgtcctttgcaactttgccgaattgcaggat 10340
>dbj|AP004525.1| Lotus japonicus genomic DNA, chromosome 5, clone:LjT08O18, TM0052b, complete sequence Length = 86497 Score = 65.9 bits (33), Expect = 1e-07 Identities = 93/113 (82%) Strand = Plus / Plus Query: 273 gtgtcgaagctgctcaggcacatggcgaaggcctggaacgccgacagcgggtagcggtag 332 ||||||||||| ||| ||| ||||| || ||||| || || ||||||||||| || ||| Sbjct: 74999 gtgtcgaagctagtcaagcaaatggcaaaagcctgaaatgcagacagcgggtaccgatag 75058 Query: 333 tccatggtgaacatgtccttggacaccttgccgaactgcaggatgatcttgtc 385 ||||| || |||||||||||| ||||| |||||||| || || |||||||| Sbjct: 75059 tccattgtaaacatgtccttgccaaccttcccgaactgaagaataatcttgtc 75111
>gb|AC132485.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone P0022D06, complete sequence Length = 142068 Score = 63.9 bits (32), Expect = 4e-07 Identities = 71/84 (84%) Strand = Plus / Minus Query: 261 caggccagcttcgtgtcgaagctgctcaggcacatggcgaaggcctggaacgccgacagc 320 ||||||||||||||| | ||||| | ||||| |||||||| |||||||| || |||||| Sbjct: 35569 caggccagcttcgtgccaaagcttgtgaggcagatggcgaacgcctggaaggctgacagc 35510 Query: 321 gggtagcggtagtccatggtgaac 344 || | ||||||||||| |||||| Sbjct: 35509 ggctgccggtagtccatcgtgaac 35486
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete sequence Length = 29737217 Score = 63.9 bits (32), Expect = 4e-07 Identities = 71/84 (84%) Strand = Plus / Minus Query: 261 caggccagcttcgtgtcgaagctgctcaggcacatggcgaaggcctggaacgccgacagc 320 ||||||||||||||| | ||||| | ||||| |||||||| |||||||| || |||||| Sbjct: 25300965 caggccagcttcgtgccaaagcttgtgaggcagatggcgaacgcctggaaggctgacagc 25300906 Query: 321 gggtagcggtagtccatggtgaac 344 || | ||||||||||| |||||| Sbjct: 25300905 ggctgccggtagtccatcgtgaac 25300882 Score = 60.0 bits (30), Expect = 7e-06 Identities = 108/134 (80%) Strand = Plus / Plus Query: 258 tcgcaggccagcttcgtgtcgaagctgctcaggcacatggcgaaggcctggaacgccgac 317 ||||||||||| || ||||||||||| || | || || || || |||||||| || || Sbjct: 21316416 tcgcaggccagttttgtgtcgaagctacttaaacatattgcaaatgcctggaaagctgag 21316475 Query: 318 agcgggtagcggtagtccatggtgaacatgtccttggacaccttgccgaactgcaggatg 377 ||||| |||||||| ||||| |||||||| || || | ||||| || ||||| || || Sbjct: 21316476 agcggatagcggtaatccattgtgaacatatcttttgctaccttaccaaactgtagaata 21316535 Query: 378 atcttgtcctgctc 391 |||||||||||||| Sbjct: 21316536 atcttgtcctgctc 21316549
>dbj|AK098851.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013000H08, full insert sequence Length = 1630 Score = 63.9 bits (32), Expect = 4e-07 Identities = 71/84 (84%) Strand = Plus / Minus Query: 261 caggccagcttcgtgtcgaagctgctcaggcacatggcgaaggcctggaacgccgacagc 320 ||||||||||||||| | ||||| | ||||| |||||||| |||||||| || |||||| Sbjct: 1290 caggccagcttcgtgccaaagcttgtgaggcagatggcgaacgcctggaaggctgacagc 1231 Query: 321 gggtagcggtagtccatggtgaac 344 || | ||||||||||| |||||| Sbjct: 1230 ggctgccggtagtccatcgtgaac 1207
>dbj|AK061747.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-038-G02, full insert sequence Length = 1685 Score = 63.9 bits (32), Expect = 4e-07 Identities = 71/84 (84%) Strand = Plus / Minus Query: 261 caggccagcttcgtgtcgaagctgctcaggcacatggcgaaggcctggaacgccgacagc 320 ||||||||||||||| | ||||| | ||||| |||||||| |||||||| || |||||| Sbjct: 1356 caggccagcttcgtgccaaagcttgtgaggcagatggcgaacgcctggaaggctgacagc 1297 Query: 321 gggtagcggtagtccatggtgaac 344 || | ||||||||||| |||||| Sbjct: 1296 ggctgccggtagtccatcgtgaac 1273
>gb|AY108213.1| Zea mays PCO076139 mRNA sequence Length = 1391 Score = 63.9 bits (32), Expect = 4e-07 Identities = 59/68 (86%) Strand = Plus / Minus Query: 279 aagctgctcaggcacatggcgaaggcctggaacgccgacagcgggtagcggtagtccatg 338 ||||| ||||| || ||||| ||||||||||| ||||| || |||||||| |||||||| Sbjct: 1081 aagctactcagacaaatggcaaaggcctggaaagccgagagagggtagcgatagtccatc 1022 Query: 339 gtgaacat 346 |||||||| Sbjct: 1021 gtgaacat 1014
>gb|AC105318.4| Oryza sativa (japonica cultivar-group) chromosome 5 clone OJ1058_F05, complete sequence Length = 109126 Score = 60.0 bits (30), Expect = 7e-06 Identities = 108/134 (80%) Strand = Plus / Plus Query: 258 tcgcaggccagcttcgtgtcgaagctgctcaggcacatggcgaaggcctggaacgccgac 317 ||||||||||| || ||||||||||| || | || || || || |||||||| || || Sbjct: 103022 tcgcaggccagttttgtgtcgaagctacttaaacatattgcaaatgcctggaaagctgag 103081 Query: 318 agcgggtagcggtagtccatggtgaacatgtccttggacaccttgccgaactgcaggatg 377 ||||| |||||||| ||||| |||||||| || || | ||||| || ||||| || || Sbjct: 103082 agcggatagcggtaatccattgtgaacatatcttttgctaccttaccaaactgtagaata 103141 Query: 378 atcttgtcctgctc 391 |||||||||||||| Sbjct: 103142 atcttgtcctgctc 103155
>ref|XM_475311.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1338 Score = 60.0 bits (30), Expect = 7e-06 Identities = 108/134 (80%) Strand = Plus / Minus Query: 258 tcgcaggccagcttcgtgtcgaagctgctcaggcacatggcgaaggcctggaacgccgac 317 ||||||||||| || ||||||||||| || | || || || || |||||||| || || Sbjct: 1334 tcgcaggccagttttgtgtcgaagctacttaaacatattgcaaatgcctggaaagctgag 1275 Query: 318 agcgggtagcggtagtccatggtgaacatgtccttggacaccttgccgaactgcaggatg 377 ||||| |||||||| ||||| |||||||| || || | ||||| || ||||| || || Sbjct: 1274 agcggatagcggtaatccattgtgaacatatcttttgctaccttaccaaactgtagaata 1215 Query: 378 atcttgtcctgctc 391 |||||||||||||| Sbjct: 1214 atcttgtcctgctc 1201
>gb|AC134930.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OSJNBb0042J17, complete sequence Length = 124139 Score = 60.0 bits (30), Expect = 7e-06 Identities = 108/134 (80%) Strand = Plus / Plus Query: 258 tcgcaggccagcttcgtgtcgaagctgctcaggcacatggcgaaggcctggaacgccgac 317 ||||||||||| || ||||||||||| || | || || || || |||||||| || || Sbjct: 33738 tcgcaggccagttttgtgtcgaagctacttaaacatattgcaaatgcctggaaagctgag 33797 Query: 318 agcgggtagcggtagtccatggtgaacatgtccttggacaccttgccgaactgcaggatg 377 ||||| |||||||| ||||| |||||||| || || | ||||| || ||||| || || Sbjct: 33798 agcggatagcggtaatccattgtgaacatatcttttgctaccttaccaaactgtagaata 33857 Query: 378 atcttgtcctgctc 391 |||||||||||||| Sbjct: 33858 atcttgtcctgctc 33871
>dbj|AK103583.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033133A18, full insert sequence Length = 2027 Score = 60.0 bits (30), Expect = 7e-06 Identities = 108/134 (80%) Strand = Plus / Minus Query: 258 tcgcaggccagcttcgtgtcgaagctgctcaggcacatggcgaaggcctggaacgccgac 317 ||||||||||| || ||||||||||| || | || || || || |||||||| || || Sbjct: 1681 tcgcaggccagttttgtgtcgaagctacttaaacatattgcaaatgcctggaaagctgag 1622 Query: 318 agcgggtagcggtagtccatggtgaacatgtccttggacaccttgccgaactgcaggatg 377 ||||| |||||||| ||||| |||||||| || || | ||||| || ||||| || || Sbjct: 1621 agcggatagcggtaatccattgtgaacatatcttttgctaccttaccaaactgtagaata 1562 Query: 378 atcttgtcctgctc 391 |||||||||||||| Sbjct: 1561 atcttgtcctgctc 1548
>dbj|AK074017.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033073D08, full insert sequence Length = 2009 Score = 60.0 bits (30), Expect = 7e-06 Identities = 108/134 (80%) Strand = Plus / Minus Query: 258 tcgcaggccagcttcgtgtcgaagctgctcaggcacatggcgaaggcctggaacgccgac 317 ||||||||||| || ||||||||||| || | || || || || |||||||| || || Sbjct: 1694 tcgcaggccagttttgtgtcgaagctacttaaacatattgcaaatgcctggaaagctgag 1635 Query: 318 agcgggtagcggtagtccatggtgaacatgtccttggacaccttgccgaactgcaggatg 377 ||||| |||||||| ||||| |||||||| || || | ||||| || ||||| || || Sbjct: 1634 agcggatagcggtaatccattgtgaacatatcttttgctaccttaccaaactgtagaata 1575 Query: 378 atcttgtcctgctc 391 |||||||||||||| Sbjct: 1574 atcttgtcctgctc 1561
>dbj|AK069622.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023023F15, full insert sequence Length = 2023 Score = 60.0 bits (30), Expect = 7e-06 Identities = 108/134 (80%) Strand = Plus / Minus Query: 258 tcgcaggccagcttcgtgtcgaagctgctcaggcacatggcgaaggcctggaacgccgac 317 ||||||||||| || ||||||||||| || | || || || || |||||||| || || Sbjct: 1677 tcgcaggccagttttgtgtcgaagctacttaaacatattgcaaatgcctggaaagctgag 1618 Query: 318 agcgggtagcggtagtccatggtgaacatgtccttggacaccttgccgaactgcaggatg 377 ||||| |||||||| ||||| |||||||| || || | ||||| || ||||| || || Sbjct: 1617 agcggatagcggtaatccattgtgaacatatcttttgctaccttaccaaactgtagaata 1558 Query: 378 atcttgtcctgctc 391 |||||||||||||| Sbjct: 1557 atcttgtcctgctc 1544
>dbj|AK059586.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-030-B11, full insert sequence Length = 1029 Score = 60.0 bits (30), Expect = 7e-06 Identities = 108/134 (80%) Strand = Plus / Minus Query: 258 tcgcaggccagcttcgtgtcgaagctgctcaggcacatggcgaaggcctggaacgccgac 317 ||||||||||| || ||||||||||| || | || || || || |||||||| || || Sbjct: 662 tcgcaggccagttttgtgtcgaagctacttaaacatattgcaaatgcctggaaagctgag 603 Query: 318 agcgggtagcggtagtccatggtgaacatgtccttggacaccttgccgaactgcaggatg 377 ||||| |||||||| ||||| |||||||| || || | ||||| || ||||| || || Sbjct: 602 agcggatagcggtaatccattgtgaacatatcttttgctaccttaccaaactgtagaata 543 Query: 378 atcttgtcctgctc 391 |||||||||||||| Sbjct: 542 atcttgtcctgctc 529
>ref|NM_190757.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1347 Score = 58.0 bits (29), Expect = 3e-05 Identities = 65/77 (84%) Strand = Plus / Minus Query: 270 ttcgtgtcgaagctgctcaggcacatggcgaaggcctggaacgccgacagcgggtagcgg 329 ||||||||||| ||||||| || || ||||| |||||||| || || || || |||||| Sbjct: 1331 ttcgtgtcgaaactgctcaaacaaatagcgaaagcctggaaggcagagagaggatagcgg 1272 Query: 330 tagtccatggtgaacat 346 |||||||| |||||||| Sbjct: 1271 tagtccattgtgaacat 1255
>ref|XM_584499.2| PREDICTED: Bos taurus similar to tubby isoform a (LOC539051), partial mRNA Length = 1755 Score = 58.0 bits (29), Expect = 3e-05 Identities = 80/97 (82%) Strand = Plus / Minus Query: 255 tactcgcaggccagcttcgtgtcgaagctgctcaggcacatggcgaaggcctggaacgcc 314 ||||||||||||||||| ||||||||||| |||| ||||| |||||||| | ||| Sbjct: 1738 tactcgcaggccagcttgctgtcgaagctggacagggcaatggcaaaggcctgcagcgca 1679 Query: 315 gacagcgggtagcggtagtccatggtgaacatgtcct 351 ||| ||||||| ||| ||||||||||||| ||||| Sbjct: 1678 cacaacgggtagttgtaatccatggtgaacacgtcct 1642
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 58.0 bits (29), Expect = 3e-05 Identities = 65/77 (84%) Strand = Plus / Minus Query: 270 ttcgtgtcgaagctgctcaggcacatggcgaaggcctggaacgccgacagcgggtagcgg 329 ||||||||||| ||||||| || || ||||| |||||||| || || || || |||||| Sbjct: 37532310 ttcgtgtcgaaactgctcaaacaaatagcgaaagcctggaaggcagagagaggatagcgg 37532251 Query: 330 tagtccatggtgaacat 346 |||||||| |||||||| Sbjct: 37532250 tagtccattgtgaacat 37532234
>dbj|AP003270.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0505D12 Length = 146951 Score = 58.0 bits (29), Expect = 3e-05 Identities = 65/77 (84%) Strand = Plus / Minus Query: 270 ttcgtgtcgaagctgctcaggcacatggcgaaggcctggaacgccgacagcgggtagcgg 329 ||||||||||| ||||||| || || ||||| |||||||| || || || || |||||| Sbjct: 126847 ttcgtgtcgaaactgctcaaacaaatagcgaaagcctggaaggcagagagaggatagcgg 126788 Query: 330 tagtccatggtgaacat 346 |||||||| |||||||| Sbjct: 126787 tagtccattgtgaacat 126771
>dbj|AK102221.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033087L15, full insert sequence Length = 1994 Score = 58.0 bits (29), Expect = 3e-05 Identities = 65/77 (84%) Strand = Plus / Minus Query: 270 ttcgtgtcgaagctgctcaggcacatggcgaaggcctggaacgccgacagcgggtagcgg 329 ||||||||||| ||||||| || || ||||| |||||||| || || || || |||||| Sbjct: 1701 ttcgtgtcgaaactgctcaaacaaatagcgaaagcctggaaggcagagagaggatagcgg 1642 Query: 330 tagtccatggtgaacat 346 |||||||| |||||||| Sbjct: 1641 tagtccattgtgaacat 1625
>ref|NM_186089.2| Oryza sativa (japonica cultivar-group), mRNA Length = 1687 Score = 56.0 bits (28), Expect = 1e-04 Identities = 67/80 (83%) Strand = Plus / Minus Query: 273 gtgtcgaagctgctcaggcacatggcgaaggcctggaacgccgacagcgggtagcggtag 332 ||||| ||||||||||| || || || || ||||| || ||||| | || |||||||| Sbjct: 1393 gtgtcaaagctgctcagacatatcgcaaacgcctgaaatgccgagataggatagcggtaa 1334 Query: 333 tccatggtgaacatgtcctt 352 |||||||||||||||||||| Sbjct: 1333 tccatggtgaacatgtcctt 1314
>ref|XM_506548.1| PREDICTED Oryza sativa (japonica cultivar-group), P0450A04.117 mRNA Length = 1949 Score = 56.0 bits (28), Expect = 1e-04 Identities = 67/80 (83%) Strand = Plus / Minus Query: 273 gtgtcgaagctgctcaggcacatggcgaaggcctggaacgccgacagcgggtagcggtag 332 ||||| ||||||||||| || || || || ||||| || ||||| | || |||||||| Sbjct: 1448 gtgtcaaagctgctcagacatatcgcaaacgcctgaaatgccgagataggatagcggtaa 1389 Query: 333 tccatggtgaacatgtcctt 352 |||||||||||||||||||| Sbjct: 1388 tccatggtgaacatgtcctt 1369
>ref|XM_695081.1| PREDICTED: Danio rerio similar to Tubby related protein 3 (Tubby-like protein 3) (LOC571484), mRNA Length = 652 Score = 56.0 bits (28), Expect = 1e-04 Identities = 46/52 (88%) Strand = Plus / Minus Query: 256 actcgcaggccagcttcgtgtcgaagctgctcaggcacatggcgaaggcctg 307 |||||||||||||||| ||||||||||| ||||| |||||||||||||| Sbjct: 442 actcgcaggccagcttgctgtcgaagctggacaggccgatggcgaaggcctg 391
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete sequence Length = 29644043 Score = 56.0 bits (28), Expect = 1e-04 Identities = 67/80 (83%) Strand = Plus / Minus Query: 273 gtgtcgaagctgctcaggcacatggcgaaggcctggaacgccgacagcgggtagcggtag 332 ||||| ||||||||||| || || || || ||||| || ||||| | || |||||||| Sbjct: 28122740 gtgtcaaagctgctcagacatatcgcaaacgcctgaaatgccgagataggatagcggtaa 28122681 Query: 333 tccatggtgaacatgtcctt 352 |||||||||||||||||||| Sbjct: 28122680 tccatggtgaacatgtcctt 28122661 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 130 ttccaagctactagtactac 149 |||||||||||||||||||| Sbjct: 601260 ttccaagctactagtactac 601241
>dbj|AP004274.5| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC clone:P0450A04 Length = 162545 Score = 56.0 bits (28), Expect = 1e-04 Identities = 67/80 (83%) Strand = Plus / Minus Query: 273 gtgtcgaagctgctcaggcacatggcgaaggcctggaacgccgacagcgggtagcggtag 332 ||||| ||||||||||| || || || || ||||| || ||||| | || |||||||| Sbjct: 106036 gtgtcaaagctgctcagacatatcgcaaacgcctgaaatgccgagataggatagcggtaa 105977 Query: 333 tccatggtgaacatgtcctt 352 |||||||||||||||||||| Sbjct: 105976 tccatggtgaacatgtcctt 105957
>dbj|AK071159.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023078O15, full insert sequence Length = 1687 Score = 56.0 bits (28), Expect = 1e-04 Identities = 67/80 (83%) Strand = Plus / Minus Query: 273 gtgtcgaagctgctcaggcacatggcgaaggcctggaacgccgacagcgggtagcggtag 332 ||||| ||||||||||| || || || || ||||| || ||||| | || |||||||| Sbjct: 1393 gtgtcaaagctgctcagacatatcgcaaacgcctgaaatgccgagataggatagcggtaa 1334 Query: 333 tccatggtgaacatgtcctt 352 |||||||||||||||||||| Sbjct: 1333 tccatggtgaacatgtcctt 1314
>dbj|AK060587.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-024-B07, full insert sequence Length = 1948 Score = 56.0 bits (28), Expect = 1e-04 Identities = 67/80 (83%) Strand = Plus / Minus Query: 273 gtgtcgaagctgctcaggcacatggcgaaggcctggaacgccgacagcgggtagcggtag 332 ||||| ||||||||||| || || || || ||||| || ||||| | || |||||||| Sbjct: 1448 gtgtcaaagctgctcagacatatcgcaaacgcctgaaatgccgagataggatagcggtaa 1389 Query: 333 tccatggtgaacatgtcctt 352 |||||||||||||||||||| Sbjct: 1388 tccatggtgaacatgtcctt 1369
>ref|XM_521835.1| PREDICTED: Pan troglodytes similar to tubby isoform a; tubby (mouse) homolog (LOC466436), mRNA Length = 1995 Score = 54.0 bits (27), Expect = 4e-04 Identities = 75/91 (82%) Strand = Plus / Minus Query: 255 tactcgcaggccagcttcgtgtcgaagctgctcaggcacatggcgaaggcctggaacgcc 314 |||||||| |||||||| ||||||||||| |||| ||||| |||||||| | ||| Sbjct: 1994 tactcgcacgccagcttgctgtcgaagctggacagggcaatggcaaaggcctgcagcgca 1935 Query: 315 gacagcgggtagcggtagtccatggtgaaca 345 ||||||||||| ||| ||||||||||||| Sbjct: 1934 cacagcgggtagttgtaatccatggtgaaca 1904
>dbj|AB023895.1| Lemna paucicostata mRNA for tubby-like protein, complete cds Length = 1539 Score = 54.0 bits (27), Expect = 4e-04 Identities = 111/139 (79%) Strand = Plus / Minus Query: 255 tactcgcaggccagcttcgtgtcgaagctgctcaggcacatggcgaaggcctggaacgcc 314 |||||||| || ||||| || |||||||| |||| || || || || ||||| || || Sbjct: 1448 tactcgcaagcaagcttagtatcgaagctactcaaacagatcgcaaaagcctgaaaagca 1389 Query: 315 gacagcgggtagcggtagtccatggtgaacatgtccttggacaccttgccgaactgcagg 374 |||||||||||||| | |||||||| || | |||||| |||||| ||||||||||| Sbjct: 1388 gacagcgggtagcgattatccatggtaaaggtatccttgcccaccttcccgaactgcaga 1329 Query: 375 atgatcttgtcctgctccg 393 || ||||| || ||||||| Sbjct: 1328 attatcttatcgtgctccg 1310
>ref|XM_542495.2| PREDICTED: Canis familiaris similar to tubby isoform a (LOC485377), mRNA Length = 1891 Score = 50.1 bits (25), Expect = 0.007 Identities = 79/97 (81%) Strand = Plus / Minus Query: 255 tactcgcaggccagcttcgtgtcgaagctgctcaggcacatggcgaaggcctggaacgcc 314 ||||||||||||||||| |||| |||||| |||| ||||| |||||||| | ||| Sbjct: 1874 tactcgcaggccagcttgctgtcaaagctggacagggcgatggcaaaggcctgcagcgca 1815 Query: 315 gacagcgggtagcggtagtccatggtgaacatgtcct 351 |||| |||||| ||| ||||||||||||| ||||| Sbjct: 1814 cacagtgggtagttgtaatccatggtgaacacgtcct 1778
>emb|CT025652.7| Mouse DNA sequence from clone RP24-68J3 on chromosome 17, complete sequence Length = 226856 Score = 48.1 bits (24), Expect = 0.026 Identities = 72/88 (81%) Strand = Plus / Minus Query: 256 actcgcaggccagcttcgtgtcgaagctgctcaggcacatggcgaaggcctggaacgccg 315 ||||||||||||||||| |||||||||| ||| |||||||||||||| | || Sbjct: 11171 actcgcaggccagcttcccgtcgaagctggagagggcgatggcgaaggcctgcagagcac 11112 Query: 316 acagcgggtagcggtagtccatggtgaa 343 |||||||||| |||||||| | |||||| Sbjct: 11111 acagcgggtaccggtagtctagggtgaa 11084
>emb|CT010441.11| Mouse DNA sequence from clone CH29-521N19 on chromosome 17, complete sequence Length = 235642 Score = 48.1 bits (24), Expect = 0.026 Identities = 72/88 (81%) Strand = Plus / Minus Query: 256 actcgcaggccagcttcgtgtcgaagctgctcaggcacatggcgaaggcctggaacgccg 315 ||||||||||||||||| |||||||||| ||| |||||||||||||| | || Sbjct: 115057 actcgcaggccagcttcccgtcgaagctggagagggcgatggcgaaggcctgcagagcac 114998 Query: 316 acagcgggtagcggtagtccatggtgaa 343 |||||||||| |||||||| | |||||| Sbjct: 114997 acagcgggtaccggtagtctagggtgaa 114970
>dbj|AK164621.1| Mus musculus 13 days embryo lung cDNA, RIKEN full-length enriched library, clone:D430040H24 product:tubby like protein 1, full insert sequence Length = 1015 Score = 48.1 bits (24), Expect = 0.026 Identities = 72/88 (81%) Strand = Plus / Minus Query: 256 actcgcaggccagcttcgtgtcgaagctgctcaggcacatggcgaaggcctggaacgccg 315 ||||||||||||||||| |||||||||| ||| |||||||||||||| | || Sbjct: 660 actcgcaggccagcttcccgtcgaagctggagagggcgatggcgaaggcctgcagagcac 601 Query: 316 acagcgggtagcggtagtccatggtgaa 343 |||||||||| |||||||| | |||||| Sbjct: 600 acagcgggtaccggtagtctagggtgaa 573
>gb|BC035952.1| Mus musculus tubby like protein 1, mRNA (cDNA clone IMAGE:4527146), with apparent retained intron Length = 1976 Score = 48.1 bits (24), Expect = 0.026 Identities = 72/88 (81%) Strand = Plus / Minus Query: 256 actcgcaggccagcttcgtgtcgaagctgctcaggcacatggcgaaggcctggaacgccg 315 ||||||||||||||||| |||||||||| ||| |||||||||||||| | || Sbjct: 1516 actcgcaggccagcttcccgtcgaagctggagagggcgatggcgaaggcctgcagagcac 1457 Query: 316 acagcgggtagcggtagtccatggtgaa 343 |||||||||| |||||||| | |||||| Sbjct: 1456 acagcgggtaccggtagtctagggtgaa 1429
>gb|AC154912.3| Mus musculus BAC clone RP23-23B10 from 17, complete sequence Length = 228141 Score = 48.1 bits (24), Expect = 0.026 Identities = 72/88 (81%) Strand = Plus / Minus Query: 256 actcgcaggccagcttcgtgtcgaagctgctcaggcacatggcgaaggcctggaacgccg 315 ||||||||||||||||| |||||||||| ||| |||||||||||||| | || Sbjct: 196326 actcgcaggccagcttcccgtcgaagctggagagggcgatggcgaaggcctgcagagcac 196267 Query: 316 acagcgggtagcggtagtccatggtgaa 343 |||||||||| |||||||| | |||||| Sbjct: 196266 acagcgggtaccggtagtctagggtgaa 196239
>gb|AF105711.1|AF105711 Mus musculus tubby like protein 1 (Tulp1) mRNA, complete cds Length = 2060 Score = 48.1 bits (24), Expect = 0.026 Identities = 72/88 (81%) Strand = Plus / Minus Query: 256 actcgcaggccagcttcgtgtcgaagctgctcaggcacatggcgaaggcctggaacgccg 315 ||||||||||||||||| |||||||||| ||| |||||||||||||| | || Sbjct: 1704 actcgcaggccagcttcccgtcgaagctggagagggcgatggcgaaggcctgcagagcac 1645 Query: 316 acagcgggtagcggtagtccatggtgaa 343 |||||||||| |||||||| | |||||| Sbjct: 1644 acagcgggtaccggtagtctagggtgaa 1617
>gb|AF085681.1|AF085681 Mus musculus tubby like protein 1 (Tulp1) mRNA, complete cds Length = 2060 Score = 48.1 bits (24), Expect = 0.026 Identities = 72/88 (81%) Strand = Plus / Minus Query: 256 actcgcaggccagcttcgtgtcgaagctgctcaggcacatggcgaaggcctggaacgccg 315 ||||||||||||||||| |||||||||| ||| |||||||||||||| | || Sbjct: 1704 actcgcaggccagcttcccgtcgaagctggagagggcgatggcgaaggcctgcagagcac 1645 Query: 316 acagcgggtagcggtagtccatggtgaa 343 |||||||||| |||||||| | |||||| Sbjct: 1644 acagcgggtaccggtagtctagggtgaa 1617
>gb|BC014820.1| Mus musculus cDNA clone IMAGE:4527888, containing frame-shift errors Length = 2037 Score = 48.1 bits (24), Expect = 0.026 Identities = 72/88 (81%) Strand = Plus / Minus Query: 256 actcgcaggccagcttcgtgtcgaagctgctcaggcacatggcgaaggcctggaacgccg 315 ||||||||||||||||| |||||||||| ||| |||||||||||||| | || Sbjct: 1662 actcgcaggccagcttcccgtcgaagctggagagggcgatggcgaaggcctgcagagcac 1603 Query: 316 acagcgggtagcggtagtccatggtgaa 343 |||||||||| |||||||| | |||||| Sbjct: 1602 acagcgggtaccggtagtctagggtgaa 1575
>ref|NM_021478.1| Mus musculus tubby like protein 1 (Tulp1), mRNA Length = 2012 Score = 48.1 bits (24), Expect = 0.026 Identities = 72/88 (81%) Strand = Plus / Minus Query: 256 actcgcaggccagcttcgtgtcgaagctgctcaggcacatggcgaaggcctggaacgccg 315 ||||||||||||||||| |||||||||| ||| |||||||||||||| | || Sbjct: 1656 actcgcaggccagcttcccgtcgaagctggagagggcgatggcgaaggcctgcagagcac 1597 Query: 316 acagcgggtagcggtagtccatggtgaa 343 |||||||||| |||||||| | |||||| Sbjct: 1596 acagcgggtaccggtagtctagggtgaa 1569
>ref|NM_177972.1| Homo sapiens tubby homolog (mouse) (TUB), transcript variant 2, mRNA Length = 6172 Score = 46.1 bits (23), Expect = 0.10 Identities = 74/91 (81%) Strand = Plus / Minus Query: 255 tactcgcaggccagcttcgtgtcgaagctgctcaggcacatggcgaaggcctggaacgcc 314 |||||||| |||||||| ||||||||||| |||| ||||| |||||||| | || Sbjct: 1669 tactcgcacgccagcttgctgtcgaagctggacagggcaatggcaaaggcctgcagtgca 1610 Query: 315 gacagcgggtagcggtagtccatggtgaaca 345 ||||||||||| ||| ||||||||||||| Sbjct: 1609 cacagcgggtagttgtaatccatggtgaaca 1579
>ref|NM_003320.3| Homo sapiens tubby homolog (mouse) (TUB), transcript variant 1, mRNA Length = 6429 Score = 46.1 bits (23), Expect = 0.10 Identities = 74/91 (81%) Strand = Plus / Minus Query: 255 tactcgcaggccagcttcgtgtcgaagctgctcaggcacatggcgaaggcctggaacgcc 314 |||||||| |||||||| ||||||||||| |||| ||||| |||||||| | || Sbjct: 1926 tactcgcacgccagcttgctgtcgaagctggacagggcaatggcaaaggcctgcagtgca 1867 Query: 315 gacagcgggtagcggtagtccatggtgaaca 345 ||||||||||| ||| ||||||||||||| Sbjct: 1866 cacagcgggtagttgtaatccatggtgaaca 1836
>gb|AC129895.5| Homo sapiens chromosome 11, clone CTD-2634E19, complete sequence Length = 140077 Score = 46.1 bits (23), Expect = 0.10 Identities = 74/91 (81%) Strand = Plus / Plus Query: 255 tactcgcaggccagcttcgtgtcgaagctgctcaggcacatggcgaaggcctggaacgcc 314 |||||||| |||||||| ||||||||||| |||| ||||| |||||||| | || Sbjct: 120523 tactcgcacgccagcttgctgtcgaagctggacagggcaatggcaaaggcctgcagtgca 120582 Query: 315 gacagcgggtagcggtagtccatggtgaaca 345 ||||||||||| ||| ||||||||||||| Sbjct: 120583 cacagcgggtagttgtaatccatggtgaaca 120613
>emb|AJ277662.1|HSA277662 Homo sapiens partial TUB gene for tubby (mouse) homolog and LMO1 gene for LIM domain only 1 protein Length = 174986 Score = 46.1 bits (23), Expect = 0.10 Identities = 74/91 (81%) Strand = Plus / Minus Query: 255 tactcgcaggccagcttcgtgtcgaagctgctcaggcacatggcgaaggcctggaacgcc 314 |||||||| |||||||| ||||||||||| |||| ||||| |||||||| | || Sbjct: 9123 tactcgcacgccagcttgctgtcgaagctggacagggcaatggcaaaggcctgcagtgca 9064 Query: 315 gacagcgggtagcggtagtccatggtgaaca 345 ||||||||||| ||| ||||||||||||| Sbjct: 9063 cacagcgggtagttgtaatccatggtgaaca 9033
>gb|BC075031.2| Homo sapiens tubby homolog (mouse), transcript variant 1, mRNA (cDNA clone MGC:104164 IMAGE:30915625), complete cds Length = 1741 Score = 46.1 bits (23), Expect = 0.10 Identities = 74/91 (81%) Strand = Plus / Minus Query: 255 tactcgcaggccagcttcgtgtcgaagctgctcaggcacatggcgaaggcctggaacgcc 314 |||||||| |||||||| ||||||||||| |||| ||||| |||||||| | || Sbjct: 1718 tactcgcacgccagcttgctgtcgaagctggacagggcaatggcaaaggcctgcagtgca 1659 Query: 315 gacagcgggtagcggtagtccatggtgaaca 345 ||||||||||| ||| ||||||||||||| Sbjct: 1658 cacagcgggtagttgtaatccatggtgaaca 1628
>gb|BC075032.2| Homo sapiens tubby homolog (mouse), transcript variant 1, mRNA (cDNA clone MGC:104008 IMAGE:30915418), complete cds Length = 1741 Score = 46.1 bits (23), Expect = 0.10 Identities = 74/91 (81%) Strand = Plus / Minus Query: 255 tactcgcaggccagcttcgtgtcgaagctgctcaggcacatggcgaaggcctggaacgcc 314 |||||||| |||||||| ||||||||||| |||| ||||| |||||||| | || Sbjct: 1718 tactcgcacgccagcttgctgtcgaagctggacagggcaatggcaaaggcctgcagtgca 1659 Query: 315 gacagcgggtagcggtagtccatggtgaaca 345 ||||||||||| ||| ||||||||||||| Sbjct: 1658 cacagcgggtagttgtaatccatggtgaaca 1628
>gb|U82467.1|HSU82467 Human tub homolog (TUB) mRNA, complete cds Length = 3256 Score = 46.1 bits (23), Expect = 0.10 Identities = 74/91 (81%) Strand = Plus / Minus Query: 255 tactcgcaggccagcttcgtgtcgaagctgctcaggcacatggcgaaggcctggaacgcc 314 |||||||| |||||||| ||||||||||| |||| ||||| |||||||| | || Sbjct: 1926 tactcgcacgccagcttgctgtcgaagctggacagggcaatggcaaaggcctgcagtgca 1867 Query: 315 gacagcgggtagcggtagtccatggtgaaca 345 ||||||||||| ||| ||||||||||||| Sbjct: 1866 cacagcgggtagttgtaatccatggtgaaca 1836
>gb|U54644.1|HSU54644 Human tub homolog mRNA, complete cds Length = 2040 Score = 46.1 bits (23), Expect = 0.10 Identities = 74/91 (81%) Strand = Plus / Minus Query: 255 tactcgcaggccagcttcgtgtcgaagctgctcaggcacatggcgaaggcctggaacgcc 314 |||||||| |||||||| ||||||||||| |||| ||||| |||||||| | || Sbjct: 1672 tactcgcacgccagcttgctgtcgaagctggacagggcaatggcaaaggcctgcagtgca 1613 Query: 315 gacagcgggtagcggtagtccatggtgaaca 345 ||||||||||| ||| ||||||||||||| Sbjct: 1612 cacagcgggtagttgtaatccatggtgaaca 1582
>gb|AC116456.12| Homo sapiens chromosome 11, clone RP11-236J17, complete sequence Length = 146502 Score = 46.1 bits (23), Expect = 0.10 Identities = 74/91 (81%) Strand = Plus / Minus Query: 255 tactcgcaggccagcttcgtgtcgaagctgctcaggcacatggcgaaggcctggaacgcc 314 |||||||| |||||||| ||||||||||| |||| ||||| |||||||| | || Sbjct: 129060 tactcgcacgccagcttgctgtcgaagctggacagggcaatggcaaaggcctgcagtgca 129001 Query: 315 gacagcgggtagcggtagtccatggtgaaca 345 ||||||||||| ||| ||||||||||||| Sbjct: 129000 cacagcgggtagttgtaatccatggtgaaca 128970
>ref|NM_001036481.1| Arabidopsis thaliana phosphoric diester hydrolase/ transcription factor AT2G47900 transcript variant AT2G47900.2 mRNA, complete cds Length = 1628 Score = 44.1 bits (22), Expect = 0.41 Identities = 34/38 (89%) Strand = Plus / Minus Query: 273 gtgtcgaagctgctcaggcacatggcgaaggcctggaa 310 |||||||| ||||| ||||| |||| |||||||||||| Sbjct: 1356 gtgtcgaaactgctgaggcaaatggtgaaggcctggaa 1319
>ref|NM_180150.1| Arabidopsis thaliana phosphoric diester hydrolase/ transcription factor AT2G47900 transcript variant AT2G47900.1 mRNA, complete cds Length = 1928 Score = 44.1 bits (22), Expect = 0.41 Identities = 34/38 (89%) Strand = Plus / Minus Query: 273 gtgtcgaagctgctcaggcacatggcgaaggcctggaa 310 |||||||| ||||| ||||| |||| |||||||||||| Sbjct: 1656 gtgtcgaaactgctgaggcaaatggtgaaggcctggaa 1619
>ref|XM_594533.2| PREDICTED: Bos taurus similar to Tubby related protein 3 (Tubby-like protein 3) (LOC516380), mRNA Length = 1877 Score = 44.1 bits (22), Expect = 0.41 Identities = 73/90 (81%) Strand = Plus / Minus Query: 256 actcgcaggccagcttcgtgtcgaagctgctcaggcacatggcgaaggcctggaacgccg 315 |||||||||||||||| ||||||||||| || | ||||| |||||||||| ||| Sbjct: 1648 actcgcaggccagcttgctgtcgaagctggagagcccgatggcaaaggcctggagcgcgc 1589 Query: 316 acagcgggtagcggtagtccatggtgaaca 345 | ||||||||| |||||||| ||||||| Sbjct: 1588 agagcgggtagttgtagtccagcgtgaaca 1559
>gb|AY045774.1| Arabidopsis thaliana tubby-like protein 3 mRNA, complete cds Length = 1221 Score = 44.1 bits (22), Expect = 0.41 Identities = 34/38 (89%) Strand = Plus / Minus Query: 273 gtgtcgaagctgctcaggcacatggcgaaggcctggaa 310 |||||||| ||||| ||||| |||| |||||||||||| Sbjct: 1202 gtgtcgaaactgctgaggcaaatggtgaaggcctggaa 1165
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 44.1 bits (22), Expect = 0.41 Identities = 25/26 (96%) Strand = Plus / Plus Query: 327 cggtagtccatggtgaacatgtcctt 352 ||||||||||||||||||| |||||| Sbjct: 13140297 cggtagtccatggtgaacaagtcctt 13140322 Score = 44.1 bits (22), Expect = 0.41 Identities = 25/26 (96%) Strand = Plus / Minus Query: 327 cggtagtccatggtgaacatgtcctt 352 ||||||||||||||||||| |||||| Sbjct: 13061189 cggtagtccatggtgaacaagtcctt 13061164
>gb|AC135257.1| Genomic sequence for Oryza sativa, Nipponbare strain, clone OJ1113A07, from chromosome 3, complete sequence Length = 151173 Score = 44.1 bits (22), Expect = 0.41 Identities = 25/26 (96%) Strand = Plus / Minus Query: 327 cggtagtccatggtgaacatgtcctt 352 ||||||||||||||||||| |||||| Sbjct: 86341 cggtagtccatggtgaacaagtcctt 86316
>gb|AY096604.1| Arabidopsis thaliana putative tubby protein (At2g47900) mRNA, complete cds Length = 1252 Score = 44.1 bits (22), Expect = 0.41 Identities = 34/38 (89%) Strand = Plus / Minus Query: 273 gtgtcgaagctgctcaggcacatggcgaaggcctggaa 310 |||||||| ||||| ||||| |||| |||||||||||| Sbjct: 1202 gtgtcgaaactgctgaggcaaatggtgaaggcctggaa 1165
>gb|AY074273.1| Arabidopsis thaliana putative tubby protein (At2g47900) mRNA, complete cds Length = 1943 Score = 44.1 bits (22), Expect = 0.41 Identities = 34/38 (89%) Strand = Plus / Minus Query: 273 gtgtcgaagctgctcaggcacatggcgaaggcctggaa 310 |||||||| ||||| ||||| |||| |||||||||||| Sbjct: 1656 gtgtcgaaactgctgaggcaaatggtgaaggcctggaa 1619
>gb|AC006072.4| Arabidopsis thaliana chromosome 2 clone T9J23 map CIC06C03, complete sequence Length = 81565 Score = 44.1 bits (22), Expect = 0.41 Identities = 34/38 (89%) Strand = Plus / Plus Query: 273 gtgtcgaagctgctcaggcacatggcgaaggcctggaa 310 |||||||| ||||| ||||| |||| |||||||||||| Sbjct: 14342 gtgtcgaaactgctgaggcaaatggtgaaggcctggaa 14379
>gb|AC005309.3| Arabidopsis thaliana chromosome 2 clone F17A22 map CIC06C03, complete sequence Length = 106355 Score = 44.1 bits (22), Expect = 0.41 Identities = 34/38 (89%) Strand = Plus / Plus Query: 273 gtgtcgaagctgctcaggcacatggcgaaggcctggaa 310 |||||||| ||||| ||||| |||| |||||||||||| Sbjct: 78651 gtgtcgaaactgctgaggcaaatggtgaaggcctggaa 78688
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 44.1 bits (22), Expect = 0.41 Identities = 25/26 (96%) Strand = Plus / Plus Query: 327 cggtagtccatggtgaacatgtcctt 352 ||||||||||||||||||| |||||| Sbjct: 13137072 cggtagtccatggtgaacaagtcctt 13137097 Score = 44.1 bits (22), Expect = 0.41 Identities = 25/26 (96%) Strand = Plus / Minus Query: 327 cggtagtccatggtgaacatgtcctt 352 ||||||||||||||||||| |||||| Sbjct: 13057964 cggtagtccatggtgaacaagtcctt 13057939
>gb|AC134231.2| Oryza sativa (japonica cultivar-group) chromosome 3 clone OSJNBa0006D11, complete sequence Length = 176637 Score = 44.1 bits (22), Expect = 0.41 Identities = 25/26 (96%) Strand = Plus / Minus Query: 327 cggtagtccatggtgaacatgtcctt 352 ||||||||||||||||||| |||||| Sbjct: 138887 cggtagtccatggtgaacaagtcctt 138862
>dbj|AK102370.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033091L01, full insert sequence Length = 2102 Score = 44.1 bits (22), Expect = 0.41 Identities = 25/26 (96%) Strand = Plus / Minus Query: 327 cggtagtccatggtgaacatgtcctt 352 ||||||||||||||||||| |||||| Sbjct: 821 cggtagtccatggtgaacaagtcctt 796
>emb|AM260505.1| Platanus acerifolia partial mRNA for tubby protein (tub gene) Length = 941 Score = 44.1 bits (22), Expect = 0.41 Identities = 61/74 (82%) Strand = Plus / Minus Query: 279 aagctgctcaggcacatggcgaaggcctggaacgccgacagcgggtagcggtagtccatg 338 |||||||| ||||| || ||||| |||||||| ||||| | || || |||| |||||| Sbjct: 646 aagctgctgaggcagatcgcgaatgcctggaatgccgagattggatactggtaatccatg 587 Query: 339 gtgaacatgtcctt 352 ||||||| |||||| Sbjct: 586 gtgaacaagtcctt 573
>ref|NM_106341.2| Arabidopsis thaliana phosphoric diester hydrolase/ transcription factor AT1G76900 transcript variant AT1G76900.1 mRNA, complete cds Length = 1609 Score = 42.1 bits (21), Expect = 1.6 Identities = 63/77 (81%) Strand = Plus / Minus Query: 273 gtgtcgaagctgctcaggcacatggcgaaggcctggaacgccgacagcgggtagcggtag 332 |||||||| ||||||| || || ||||| ||||| ||||| || ||||| || ||| | Sbjct: 1422 gtgtcgaaactgctcaaacagatagcgaaagcctgaaacgcagagagcggataccggaaa 1363 Query: 333 tccatggtgaacatgtc 349 ||||| ||||||||||| Sbjct: 1362 tccatcgtgaacatgtc 1346
>ref|NM_179563.1| Arabidopsis thaliana phosphoric diester hydrolase/ transcription factor AT1G76900 transcript variant AT1G76900.2 mRNA, complete cds Length = 1708 Score = 42.1 bits (21), Expect = 1.6 Identities = 63/77 (81%) Strand = Plus / Minus Query: 273 gtgtcgaagctgctcaggcacatggcgaaggcctggaacgccgacagcgggtagcggtag 332 |||||||| ||||||| || || ||||| ||||| ||||| || ||||| || ||| | Sbjct: 1521 gtgtcgaaactgctcaaacagatagcgaaagcctgaaacgcagagagcggataccggaaa 1462 Query: 333 tccatggtgaacatgtc 349 ||||| ||||||||||| Sbjct: 1461 tccatcgtgaacatgtc 1445
>ref|XM_467371.1| Oryza sativa (japonica cultivar-group), mRNA Length = 2345 Score = 42.1 bits (21), Expect = 1.6 Identities = 45/53 (84%) Strand = Plus / Minus Query: 273 gtgtcgaagctgctcaggcacatggcgaaggcctggaacgccgacagcgggta 325 ||||| ||||| ||||||| || || || |||||||||||||| |||||||| Sbjct: 1947 gtgtcaaagctagtcaggcagatcgcaaatgcctggaacgccgagagcgggta 1895
>gb|AF487267.1| Arabidopsis thaliana tubby-like protein TULP1 (TULP1) mRNA, complete cds Length = 1368 Score = 42.1 bits (21), Expect = 1.6 Identities = 63/77 (81%) Strand = Plus / Minus Query: 273 gtgtcgaagctgctcaggcacatggcgaaggcctggaacgccgacagcgggtagcggtag 332 |||||||| ||||||| || || ||||| ||||| ||||| || ||||| || ||| | Sbjct: 1349 gtgtcgaaactgctcaaacagatagcgaaagcctgaaacgcagagagcggataccggaaa 1290 Query: 333 tccatggtgaacatgtc 349 ||||| ||||||||||| Sbjct: 1289 tccatcgtgaacatgtc 1273
>gb|AC002291.1| Arabidopsis thaliana chromosome I BAC F22K20 genomic sequence, complete sequence Length = 96642 Score = 42.1 bits (21), Expect = 1.6 Identities = 63/77 (81%) Strand = Plus / Minus Query: 273 gtgtcgaagctgctcaggcacatggcgaaggcctggaacgccgacagcgggtagcggtag 332 |||||||| ||||||| || || ||||| ||||| ||||| || ||||| || ||| | Sbjct: 3309 gtgtcgaaactgctcaaacagatagcgaaagcctgaaacgcagagagcggataccggaaa 3250 Query: 333 tccatggtgaacatgtc 349 ||||| ||||||||||| Sbjct: 3249 tccatcgtgaacatgtc 3233
>ref|XM_541507.2| PREDICTED: Canis familiaris similar to tubby-like protein 2 (predicted) (LOC484392), mRNA Length = 1474 Score = 42.1 bits (21), Expect = 1.6 Identities = 30/33 (90%) Strand = Plus / Minus Query: 318 agcgggtagcggtagtccatggtgaacatgtcc 350 |||||| ||||| |||||||||||||| ||||| Sbjct: 1410 agcgggaagcggaagtccatggtgaacgtgtcc 1378
>emb|AL451047.7| Human DNA sequence from clone RP11-1B20 on chromosome 1 Contains part of the CDC42BPA gene for CDC42 binding protein kinase alpha (DMPK-like), a novel gene and a CpG island, complete sequence Length = 77054 Score = 42.1 bits (21), Expect = 1.6 Identities = 24/25 (96%) Strand = Plus / Plus Query: 125 tccagttccaagctactagtactac 149 |||||||||| |||||||||||||| Sbjct: 13316 tccagttccatgctactagtactac 13340
>gb|AY139758.1| Arabidopsis thaliana At1g76900/F7O12_7 mRNA, complete cds Length = 1642 Score = 42.1 bits (21), Expect = 1.6 Identities = 63/77 (81%) Strand = Plus / Minus Query: 273 gtgtcgaagctgctcaggcacatggcgaaggcctggaacgccgacagcgggtagcggtag 332 |||||||| ||||||| || || ||||| ||||| ||||| || ||||| || ||| | Sbjct: 1520 gtgtcgaaactgctcaaacagatagcgaaagcctgaaacgcagagagcggataccggaaa 1461 Query: 333 tccatggtgaacatgtc 349 ||||| ||||||||||| Sbjct: 1460 tccatcgtgaacatgtc 1444
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 42.1 bits (21), Expect = 1.6 Identities = 45/53 (84%) Strand = Plus / Minus Query: 273 gtgtcgaagctgctcaggcacatggcgaaggcctggaacgccgacagcgggta 325 ||||| ||||| ||||||| || || || |||||||||||||| |||||||| Sbjct: 29130159 gtgtcaaagctagtcaggcagatcgcaaatgcctggaacgccgagagcgggta 29130107 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 447 ggcggctggctcggcgccgc 466 |||||||||||||||||||| Sbjct: 27327302 ggcggctggctcggcgccgc 27327321
>emb|BX814933.1|CNS0ADX5 Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTLS19ZH06 of Adult vegetative tissue of strain col-0 of Arabidopsis thaliana (thale cress) Length = 1643 Score = 42.1 bits (21), Expect = 1.6 Identities = 63/77 (81%) Strand = Plus / Minus Query: 273 gtgtcgaagctgctcaggcacatggcgaaggcctggaacgccgacagcgggtagcggtag 332 |||||||| ||||||| || || ||||| ||||| ||||| || ||||| || ||| | Sbjct: 1496 gtgtcgaaactgctcaaacagatagcgaaagcctgaaacgcagagagcggataccggaaa 1437 Query: 333 tccatggtgaacatgtc 349 ||||| ||||||||||| Sbjct: 1436 tccatcgtgaacatgtc 1420
>emb|BX813680.1|CNS0AAJU Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTFB32ZB03 of Flowers and buds of strain col-0 of Arabidopsis thaliana (thale cress) Length = 1615 Score = 42.1 bits (21), Expect = 1.6 Identities = 63/77 (81%) Strand = Plus / Minus Query: 273 gtgtcgaagctgctcaggcacatggcgaaggcctggaacgccgacagcgggtagcggtag 332 |||||||| ||||||| || || ||||| ||||| ||||| || ||||| || ||| | Sbjct: 1406 gtgtcgaaactgctcaaacagatagcgaaagcctgaaacgcagagagcggataccggaaa 1347 Query: 333 tccatggtgaacatgtc 349 ||||| ||||||||||| Sbjct: 1346 tccatcgtgaacatgtc 1330
>gb|AC079283.4|AC079283 Arabidopsis thaliana chromosome 1 BAC F7O12 genomic sequence, complete sequence Length = 39456 Score = 42.1 bits (21), Expect = 1.6 Identities = 63/77 (81%) Strand = Plus / Minus Query: 273 gtgtcgaagctgctcaggcacatggcgaaggcctggaacgccgacagcgggtagcggtag 332 |||||||| ||||||| || || ||||| ||||| ||||| || ||||| || ||| | Sbjct: 37765 gtgtcgaaactgctcaaacagatagcgaaagcctgaaacgcagagagcggataccggaaa 37706 Query: 333 tccatggtgaacatgtc 349 ||||| ||||||||||| Sbjct: 37705 tccatcgtgaacatgtc 37689
>gb|BT003039.1| Arabidopsis thaliana At1g76900/F7O12_7 gene, complete cds Length = 1368 Score = 42.1 bits (21), Expect = 1.6 Identities = 63/77 (81%) Strand = Plus / Minus Query: 273 gtgtcgaagctgctcaggcacatggcgaaggcctggaacgccgacagcgggtagcggtag 332 |||||||| ||||||| || || ||||| ||||| ||||| || ||||| || ||| | Sbjct: 1349 gtgtcgaaactgctcaaacagatagcgaaagcctgaaacgcagagagcggataccggaaa 1290 Query: 333 tccatggtgaacatgtc 349 ||||| ||||||||||| Sbjct: 1289 tccatcgtgaacatgtc 1273
>dbj|AP005323.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC clone:P0680A05 Length = 168092 Score = 42.1 bits (21), Expect = 1.6 Identities = 45/53 (84%) Strand = Plus / Minus Query: 273 gtgtcgaagctgctcaggcacatggcgaaggcctggaacgccgacagcgggta 325 ||||| ||||| ||||||| || || || |||||||||||||| |||||||| Sbjct: 20127 gtgtcaaagctagtcaggcagatcgcaaatgcctggaacgccgagagcgggta 20075
>ref|XM_320575.2| Anopheles gambiae str. PEST ENSANGP00000015243 (ENSANGG00000012754), partial mRNA Length = 1344 Score = 42.1 bits (21), Expect = 1.6 Identities = 45/53 (84%) Strand = Plus / Minus Query: 297 gcgaaggcctggaacgccgacagcgggtagcggtagtccatggtgaacatgtc 349 ||||| ||||||||||| ||||||| || ||| ||||||| ||||| ||||| Sbjct: 1301 gcgaacgcctggaacgcgcacagcggataccggaagtccatcgtgaagatgtc 1249
>dbj|AK101936.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033074D16, full insert sequence Length = 3316 Score = 42.1 bits (21), Expect = 1.6 Identities = 45/53 (84%) Strand = Plus / Minus Query: 273 gtgtcgaagctgctcaggcacatggcgaaggcctggaacgccgacagcgggta 325 ||||| ||||| ||||||| || || || |||||||||||||| |||||||| Sbjct: 2995 gtgtcaaagctagtcaggcagatcgcaaatgcctggaacgccgagagcgggta 2943
>dbj|AK064855.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013000H10, full insert sequence Length = 2345 Score = 42.1 bits (21), Expect = 1.6 Identities = 45/53 (84%) Strand = Plus / Minus Query: 273 gtgtcgaagctgctcaggcacatggcgaaggcctggaacgccgacagcgggta 325 ||||| ||||| ||||||| || || || |||||||||||||| |||||||| Sbjct: 1947 gtgtcaaagctagtcaggcagatcgcaaatgcctggaacgccgagagcgggta 1895
>dbj|AK062089.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-044-G09, full insert sequence Length = 1571 Score = 42.1 bits (21), Expect = 1.6 Identities = 45/53 (84%) Strand = Plus / Minus Query: 273 gtgtcgaagctgctcaggcacatggcgaaggcctggaacgccgacagcgggta 325 ||||| ||||| ||||||| || || || |||||||||||||| |||||||| Sbjct: 1250 gtgtcaaagctagtcaggcagatcgcaaatgcctggaacgccgagagcgggta 1198
>gb|AE000513.1| Deinococcus radiodurans R1 chromosome 1, complete sequence Length = 2648638 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 446 cggcggctggctcggcgccgc 466 ||||||||||||||||||||| Sbjct: 745370 cggcggctggctcggcgccgc 745350
>gb|CP000031.1| Silicibacter pomeroyi DSS-3, complete genome Length = 4109442 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 432 cctgccggggctggcggcgg 451 |||||||||||||||||||| Sbjct: 3864750 cctgccggggctggcggcgg 3864731
>ref|XM_508962.1| PREDICTED: Pan troglodytes nuclear matrix transcription factor 4 (LOC451790), mRNA Length = 2757 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 18 agacaatcatgggagccgaa 37 |||||||||||||||||||| Sbjct: 937 agacaatcatgggagccgaa 918
>gb|AE017341.1| Cryptococcus neoformans var. neoformans JEC21 chromosome 1, complete sequence Length = 2300533 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 193 cgtctactttttcttccctt 212 |||||||||||||||||||| Sbjct: 1125197 cgtctactttttcttccctt 1125178
>ref|XM_369165.1| Magnaporthe grisea 70-15 chromosome VI hypothetical protein (MG00079.4) partial mRNA Length = 1569 Score = 40.1 bits (20), Expect = 6.4 Identities = 23/24 (95%) Strand = Plus / Minus Query: 170 cggaaacaaaaggcgtgcgtccgc 193 ||||||||||| |||||||||||| Sbjct: 1297 cggaaacaaaatgcgtgcgtccgc 1274
>ref|XM_416776.1| PREDICTED: Gallus gallus similar to cofactor required for Sp1 transcriptional activation, subunit 2, 150kDa; human homolog of yeast RGR1; chromosome X open reading frame 4; vitamin D receptor-interacting protein complex component DRIP150; thyroid hormone receptor-associate... (LOC418572), mRNA Length = 5128 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 435 gccggggctggcggcggctg 454 |||||||||||||||||||| Sbjct: 657 gccggggctggcggcggctg 638
>ref|NM_001039918.1| Homo sapiens zinc finger protein 384 (ZNF384), transcript variant 4, mRNA Length = 3069 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 18 agacaatcatgggagccgaa 37 |||||||||||||||||||| Sbjct: 726 agacaatcatgggagccgaa 707
>ref|NM_001039919.1| Homo sapiens zinc finger protein 384 (ZNF384), transcript variant 5, mRNA Length = 2941 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 18 agacaatcatgggagccgaa 37 |||||||||||||||||||| Sbjct: 598 agacaatcatgggagccgaa 579
>ref|NM_001039917.1| Homo sapiens zinc finger protein 384 (ZNF384), transcript variant 3, mRNA Length = 2989 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 18 agacaatcatgggagccgaa 37 |||||||||||||||||||| Sbjct: 646 agacaatcatgggagccgaa 627
>ref|NM_133476.3| Homo sapiens zinc finger protein 384 (ZNF384), transcript variant 2, mRNA Length = 3117 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 18 agacaatcatgggagccgaa 37 |||||||||||||||||||| Sbjct: 774 agacaatcatgggagccgaa 755
>ref|NM_001039916.1| Homo sapiens zinc finger protein 384 (ZNF384), transcript variant 1, mRNA Length = 3286 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 18 agacaatcatgggagccgaa 37 |||||||||||||||||||| Sbjct: 943 agacaatcatgggagccgaa 924
>gb|AC166903.2| Mus musculus BAC clone RP24-163K10 from chromosome 16, complete sequence Length = 184060 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 199 ctttttcttcccttcccctc 218 |||||||||||||||||||| Sbjct: 98739 ctttttcttcccttcccctc 98720
>gb|BC065261.1| Homo sapiens tubby like protein 1, mRNA (cDNA clone MGC:70753 IMAGE:6144003), complete cds Length = 1948 Score = 40.1 bits (20), Expect = 6.4 Identities = 71/88 (80%) Strand = Plus / Minus Query: 256 actcgcaggccagcttcgtgtcgaagctgctcaggcacatggcgaaggcctggaacgccg 315 ||||||||||||||||| |||||| ||| ||| |||||||||||||| | || Sbjct: 1480 actcgcaggccagcttcccgtcgaaactggagagggcgatggcgaaggcctgcagggcgc 1421 Query: 316 acagcgggtagcggtagtccatggtgaa 343 |||||||||| |||||||| | |||||| Sbjct: 1420 acagcgggtaccggtagtctagggtgaa 1393
>ref|XM_848885.1| PREDICTED: Canis familiaris similar to Homeobox protein HMX3 (Homeobox protein Nkx-5.1) (LOC611245), mRNA Length = 2682 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 425 cggggcacctgccggggctg 444 |||||||||||||||||||| Sbjct: 1354 cggggcacctgccggggctg 1335
>ref|XM_862556.1| PREDICTED: Canis familiaris similar to Zinc finger protein 384 (Nuclear matrix transcription factor 4) (CAG repeat protein 1), transcript variant 14 (LOC486723), mRNA Length = 1876 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 18 agacaatcatgggagccgaa 37 |||||||||||||||||||| Sbjct: 704 agacaatcatgggagccgaa 685
>ref|XM_862544.1| PREDICTED: Canis familiaris similar to Zinc finger protein 384 (Nuclear matrix transcription factor 4) (CAG repeat protein 1), transcript variant 13 (LOC486723), mRNA Length = 1831 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 18 agacaatcatgggagccgaa 37 |||||||||||||||||||| Sbjct: 704 agacaatcatgggagccgaa 685
>ref|XM_862536.1| PREDICTED: Canis familiaris similar to Zinc finger protein 384 (Nuclear matrix transcription factor 4) (CAG repeat protein 1), transcript variant 12 (LOC486723), mRNA Length = 1948 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 18 agacaatcatgggagccgaa 37 |||||||||||||||||||| Sbjct: 704 agacaatcatgggagccgaa 685
>ref|XM_862526.1| PREDICTED: Canis familiaris similar to Zinc finger protein 384 (Nuclear matrix transcription factor 4) (CAG repeat protein 1), transcript variant 11 (LOC486723), mRNA Length = 1939 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 18 agacaatcatgggagccgaa 37 |||||||||||||||||||| Sbjct: 656 agacaatcatgggagccgaa 637
>ref|XM_862518.1| PREDICTED: Canis familiaris similar to Zinc finger protein 384 (Nuclear matrix transcription factor 4) (CAG repeat protein 1), transcript variant 10 (LOC486723), mRNA Length = 2013 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 18 agacaatcatgggagccgaa 37 |||||||||||||||||||| Sbjct: 730 agacaatcatgggagccgaa 711
>ref|XM_862508.1| PREDICTED: Canis familiaris similar to Zinc finger protein 384 (Nuclear matrix transcription factor 4) (CAG repeat protein 1), transcript variant 9 (LOC486723), mRNA Length = 1929 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 18 agacaatcatgggagccgaa 37 |||||||||||||||||||| Sbjct: 778 agacaatcatgggagccgaa 759
>ref|XM_543850.2| PREDICTED: Canis familiaris similar to Zinc finger protein 384 (Nuclear matrix transcription factor 4) (CAG repeat protein 1), transcript variant 1 (LOC486723), mRNA Length = 1891 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 18 agacaatcatgggagccgaa 37 |||||||||||||||||||| Sbjct: 608 agacaatcatgggagccgaa 589
>ref|XM_862489.1| PREDICTED: Canis familiaris similar to Zinc finger protein 384 (Nuclear matrix transcription factor 4) (CAG repeat protein 1), transcript variant 8 (LOC486723), mRNA Length = 1855 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 18 agacaatcatgggagccgaa 37 |||||||||||||||||||| Sbjct: 704 agacaatcatgggagccgaa 685
>ref|XM_862479.1| PREDICTED: Canis familiaris similar to Zinc finger protein 384 (Nuclear matrix transcription factor 4) (CAG repeat protein 1), transcript variant 7 (LOC486723), mRNA Length = 1804 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 18 agacaatcatgggagccgaa 37 |||||||||||||||||||| Sbjct: 704 agacaatcatgggagccgaa 685
>ref|XM_862449.1| PREDICTED: Canis familiaris similar to Zinc finger protein 384 (Nuclear matrix transcription factor 4) (CAG repeat protein 1), transcript variant 4 (LOC486723), mRNA Length = 897 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 18 agacaatcatgggagccgaa 37 |||||||||||||||||||| Sbjct: 427 agacaatcatgggagccgaa 408
>ref|XM_862440.1| PREDICTED: Canis familiaris similar to Zinc finger protein 384 (Nuclear matrix transcription factor 4) (CAG repeat protein 1), transcript variant 3 (LOC486723), mRNA Length = 2061 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 18 agacaatcatgggagccgaa 37 |||||||||||||||||||| Sbjct: 778 agacaatcatgggagccgaa 759
>ref|XM_848434.1| PREDICTED: Canis familiaris similar to Zinc finger protein 384 (Nuclear matrix transcription factor 4) (CAG repeat protein 1), transcript variant 2 (LOC486723), mRNA Length = 1987 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 18 agacaatcatgggagccgaa 37 |||||||||||||||||||| Sbjct: 704 agacaatcatgggagccgaa 685
>gb|CP000352.1| Ralstonia metallidurans CH34, complete genome Length = 3928089 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 307 ggaacgccgacagcgggtag 326 |||||||||||||||||||| Sbjct: 1710233 ggaacgccgacagcgggtag 1710252
>ref|XM_566781.1| Cryptococcus neoformans var. neoformans JEC21 hypothetical protein (CNA04180) partial mRNA Length = 728 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 193 cgtctactttttcttccctt 212 |||||||||||||||||||| Sbjct: 403 cgtctactttttcttccctt 384
>gb|AC124408.4| Mus musculus BAC clone RP24-262E22 from chromosome 14, complete sequence Length = 159082 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 200 tttttcttcccttcccctca 219 |||||||||||||||||||| Sbjct: 52805 tttttcttcccttcccctca 52786
>gb|BC032714.1| Homo sapiens tubby like protein 1, mRNA (cDNA clone MGC:45167 IMAGE:5495136), complete cds Length = 1976 Score = 40.1 bits (20), Expect = 6.4 Identities = 71/88 (80%) Strand = Plus / Minus Query: 256 actcgcaggccagcttcgtgtcgaagctgctcaggcacatggcgaaggcctggaacgccg 315 ||||||||||||||||| |||||| ||| ||| |||||||||||||| | || Sbjct: 1497 actcgcaggccagcttcccgtcgaaactggagagggcgatggcgaaggcctgcagggcgc 1438 Query: 316 acagcgggtagcggtagtccatggtgaa 343 |||||||||| |||||||| | |||||| Sbjct: 1437 acagcgggtaccggtagtctagggtgaa 1410
>gb|AC164563.4| Mus musculus BAC clone RP23-130D15 from chromosome 6, complete sequence Length = 202948 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 18 agacaatcatgggagccgaa 37 |||||||||||||||||||| Sbjct: 201101 agacaatcatgggagccgaa 201082
>gb|AC142315.1| Pan troglodytes BAC clone RP43-48P12 from 7, complete sequence Length = 178928 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 195 tctactttttcttcccttcc 214 |||||||||||||||||||| Sbjct: 111813 tctactttttcttcccttcc 111832
>gb|CP000283.1| Rhodopseudomonas palustris BisB5, complete genome Length = 4892717 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 451 gctggctcggcgccgcgatc 470 |||||||||||||||||||| Sbjct: 2845725 gctggctcggcgccgcgatc 2845744
>emb|AL080284.20|HSJ177I10 Human DNA sequence from clone RP1-177I10 on chromosome 6q16.1-16.3 Contains a novel gene, complete sequence Length = 160750 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 205 cttcccttcccctcaaatgc 224 |||||||||||||||||||| Sbjct: 3589 cttcccttcccctcaaatgc 3570
>emb|AL033519.42|HS340B19 Human DNA sequence from clone RP3-340B19 on chromosome 6p21.2-21.3 Contains the TULP1 gene for tubby like protein 1, a novel gene, ribosomal protein S15A (RPS15A) and L36 (RPL36) pseudogenes, the 3' end of the FKBP5 gene for FK506 binding protein 5 (FKBP51) and two CpG islands, complete sequence Length = 178985 Score = 40.1 bits (20), Expect = 6.4 Identities = 71/88 (80%) Strand = Plus / Plus Query: 256 actcgcaggccagcttcgtgtcgaagctgctcaggcacatggcgaaggcctggaacgccg 315 ||||||||||||||||| |||||| ||| ||| |||||||||||||| | || Sbjct: 2366 actcgcaggccagcttcccgtcgaaactggagagggcgatggcgaaggcctgcagggcgc 2425 Query: 316 acagcgggtagcggtagtccatggtgaa 343 |||||||||| |||||||| | |||||| Sbjct: 2426 acagcgggtaccggtagtctagggtgaa 2453
>emb|CR860618.1| Pongo pygmaeus mRNA; cDNA DKFZp459I2225 (from clone DKFZp459I2225) Length = 2981 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 18 agacaatcatgggagccgaa 37 |||||||||||||||||||| Sbjct: 693 agacaatcatgggagccgaa 674
>ref|NM_175557.3| Mus musculus zinc finger protein 384 (Zfp384), mRNA Length = 2901 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 18 agacaatcatgggagccgaa 37 |||||||||||||||||||| Sbjct: 607 agacaatcatgggagccgaa 588
>gb|CP000240.1| Synechococcus sp. JA-2-3B'a(2-13), complete genome Length = 3046682 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 392 cggcgccggggcaggctgcg 411 |||||||||||||||||||| Sbjct: 191069 cggcgccggggcaggctgcg 191088
>dbj|AK095734.1| Homo sapiens cDNA FLJ38415 fis, clone FEBRA2009567, highly similar to Rattus norvegicus clone NP/NMP4 21H nuclear matrix transcription factor mRNA Length = 2320 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 18 agacaatcatgggagccgaa 37 |||||||||||||||||||| Sbjct: 737 agacaatcatgggagccgaa 718
>gb|AC117521.2| Homo sapiens chromosome 5 clone RP11-1015H3, complete sequence Length = 171405 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 202 tttcttcccttcccctcaaa 221 |||||||||||||||||||| Sbjct: 147196 tttcttcccttcccctcaaa 147177
>gb|AF379597.1| Nehalennia irene clone a3028 sequence Length = 276 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 200 tttttcttcccttcccctca 219 |||||||||||||||||||| Sbjct: 258 tttttcttcccttcccctca 239
>dbj|AK156026.1| Mus musculus activated spleen cDNA, RIKEN full-length enriched library, clone:F830004M02 product:Nuclear matrix transcription factor homolog [Rattus norvegicus], full insert sequence Length = 3148 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 18 agacaatcatgggagccgaa 37 |||||||||||||||||||| Sbjct: 774 agacaatcatgggagccgaa 755
>dbj|AK172476.1| Mus musculus activated spleen cDNA, RIKEN full-length enriched library, clone:F830209I09 product:similar to Zinc finger protein 384 (Nuclear matrix transcription factor 4) (Cas-associated zinc finger protein) [Rattus norvegicus], full insert sequence Length = 1865 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 18 agacaatcatgggagccgaa 37 |||||||||||||||||||| Sbjct: 1162 agacaatcatgggagccgaa 1143
>gb|AC010448.7| Homo sapiens chromosome 5 clone CTD-2237D2, complete sequence Length = 140090 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 202 tttcttcccttcccctcaaa 221 |||||||||||||||||||| Sbjct: 44959 tttcttcccttcccctcaaa 44978
>dbj|AK081740.1| Mus musculus 16 days embryo head cDNA, RIKEN full-length enriched library, clone:C130073D16 product:unclassifiable, full insert sequence Length = 2438 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 18 agacaatcatgggagccgaa 37 |||||||||||||||||||| Sbjct: 52 agacaatcatgggagccgaa 33
>gb|BC064013.1| Mus musculus zinc finger protein 384, mRNA (cDNA clone MGC:70135 IMAGE:6515698), complete cds Length = 2901 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 18 agacaatcatgggagccgaa 37 |||||||||||||||||||| Sbjct: 607 agacaatcatgggagccgaa 588
>gb|CP000250.1| Rhodopseudomonas palustris HaA2, complete genome Length = 5331656 Score = 40.1 bits (20), Expect = 6.4 Identities = 23/24 (95%) Strand = Plus / Minus Query: 446 cggcggctggctcggcgccgcgat 469 |||||||||| ||||||||||||| Sbjct: 2493761 cggcggctgggtcggcgccgcgat 2493738
>dbj|AK086185.1| Mus musculus 15 days embryo head cDNA, RIKEN full-length enriched library, clone:D930011F07 product:NUCLEAR MATRIX TRANSCRIPTION FACTOR homolog [Rattus norvegicus], full insert sequence Length = 2474 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 18 agacaatcatgggagccgaa 37 |||||||||||||||||||| Sbjct: 668 agacaatcatgggagccgaa 649
>gb|AC125494.2| Homo sapiens 12 PAC RP4-761J14 (Roswell Park Cancer Institute Human PAC Library) complete sequence Length = 143979 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 18 agacaatcatgggagccgaa 37 |||||||||||||||||||| Sbjct: 120047 agacaatcatgggagccgaa 120028
>ref|XM_228360.3| PREDICTED: Rattus norvegicus tubby like protein 1 (predicted) (Tulp1_predicted), mRNA Length = 1857 Score = 40.1 bits (20), Expect = 6.4 Identities = 71/88 (80%) Strand = Plus / Minus Query: 256 actcgcaggccagcttcgtgtcgaagctgctcaggcacatggcgaaggcctggaacgccg 315 ||||||||||||||||| |||||| ||| ||| |||||||||||||| | || Sbjct: 1855 actcgcaggccagcttcccgtcgaaactggagagggcgatggcgaaggcctgcagggcgc 1796 Query: 316 acagcgggtagcggtagtccatggtgaa 343 |||||||||| ||||| |||| |||||| Sbjct: 1795 acagcgggtaccggtaatccagggtgaa 1768
>ref|XM_577071.1| PREDICTED: Rattus norvegicus similar to RIKEN cDNA 4933437K13 (LOC501674), mRNA Length = 4836 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 71 aacttagcttcaagggaagc 90 |||||||||||||||||||| Sbjct: 442 aacttagcttcaagggaagc 461
>gb|CP000252.1| Syntrophus aciditrophicus SB, complete genome Length = 3179300 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 331 agtccatggtgaacatgtcc 350 |||||||||||||||||||| Sbjct: 1479082 agtccatggtgaacatgtcc 1479101
>gb|AF034923.1|HSTULP1S05 Homo sapiens tubby like protein 1 (TULP1) gene, exon 15, and complete cds Length = 1182 Score = 40.1 bits (20), Expect = 6.4 Identities = 71/88 (80%) Strand = Plus / Minus Query: 256 actcgcaggccagcttcgtgtcgaagctgctcaggcacatggcgaaggcctggaacgccg 315 ||||||||||||||||| |||||| ||| ||| |||||||||||||| | || Sbjct: 716 actcgcaggccagcttcccgtcgaaactggagagggcgatggcgaaggcctgcagggcgc 657 Query: 316 acagcgggtagcggtagtccatggtgaa 343 |||||||||| |||||||| | |||||| Sbjct: 656 acagcgggtaccggtagtctagggtgaa 629
>dbj|AP003746.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC clone:OJ1123_C12 Length = 114309 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 130 ttccaagctactagtactac 149 |||||||||||||||||||| Sbjct: 35762 ttccaagctactagtactac 35743
>gb|AC010283.5|AC010283 Homo sapiens chromosome 5 clone CTC-555J2, complete sequence Length = 157896 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 202 tttcttcccttcccctcaaa 221 |||||||||||||||||||| Sbjct: 65647 tttcttcccttcccctcaaa 65666
>dbj|AP004188.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OJ1493_H11 Length = 106693 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 447 ggcggctggctcggcgccgc 466 |||||||||||||||||||| Sbjct: 42235 ggcggctggctcggcgccgc 42254
>emb|CT573326.1| Pseudomonas entomophila str. L48 chromosome,complete sequence Length = 5888780 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 307 ggaacgccgacagcgggtag 326 |||||||||||||||||||| Sbjct: 1991571 ggaacgccgacagcgggtag 1991552
>gb|AC134529.6| Mus musculus BAC clone RP24-503A2 from chromosome 6, complete sequence Length = 166392 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 18 agacaatcatgggagccgaa 37 |||||||||||||||||||| Sbjct: 68865 agacaatcatgggagccgaa 68846
>dbj|AP006627.1| Bacillus clausii KSM-K16 DNA, complete genome Length = 4303871 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 162 aatgaaggcggaaacaaaag 181 |||||||||||||||||||| Sbjct: 4092559 aatgaaggcggaaacaaaag 4092540
>gb|U54643.1|MMU54643 Mus musculus tubby (tub) mRNA, complete cds Length = 1805 Score = 40.1 bits (20), Expect = 6.4 Identities = 29/32 (90%) Strand = Plus / Minus Query: 253 tttactcgcaggccagcttcgtgtcgaagctg 284 ||||||||||||||||||| |||| |||||| Sbjct: 1658 tttactcgcaggccagcttgctgtcaaagctg 1627
>dbj|AB070238.1| Homo sapiens NMP4 gene for nuclear matrix transcription factor4, complete cds Length = 1731 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 18 agacaatcatgggagccgaa 37 |||||||||||||||||||| Sbjct: 445 agacaatcatgggagccgaa 426 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 3,303,206 Number of Sequences: 3902068 Number of extensions: 3303206 Number of successful extensions: 65426 Number of sequences better than 10.0: 171 Number of HSP's better than 10.0 without gapping: 158 Number of HSP's successfully gapped in prelim test: 15 Number of HSP's that attempted gapping in prelim test: 64210 Number of HSP's gapped (non-prelim): 1199 length of query: 474 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 452 effective length of database: 17,147,199,772 effective search space: 7750534296944 effective search space used: 7750534296944 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)