ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbart22d01 |
|---|---|
| Clone Library Name | barley_pub |
>TRMB_PROAC (Q6A6S9) tRNA (guanine-N(7)-)-methyltransferase (EC 2.1.1.33)| (tRNA(m7G46)-methyltransferase) Length = 314 Score = 35.4 bits (80), Expect = 0.065 Identities = 21/47 (44%), Positives = 25/47 (53%), Gaps = 5/47 (10%) Frame = -2 Query: 327 PQEQDQLHAPPAGAERER-----ECGAGAHDAGDEVRRGLLIRARRS 202 P D A PA A R + E AGAH +GD VRRG++ RRS Sbjct: 43 PAPLDPTDASPAQARRHQPGLGVEVSAGAHRSGDRVRRGVVSFVRRS 89
>GNA12_HUMAN (Q03113) Guanine nucleotide-binding protein alpha-12 subunit (G| alpha-12) Length = 380 Score = 31.6 bits (70), Expect = 0.93 Identities = 18/38 (47%), Positives = 21/38 (55%), Gaps = 6/38 (15%) Frame = -2 Query: 294 AGAERERECGAGAHDAGDEVRR------GLLIRARRSI 199 AG RER G+GA DA E RR LL R RR++ Sbjct: 16 AGGARERRAGSGARDAEREARRRSRDIDALLARERRAV 53
>ATG13_EMENI (Q5BBK4) Autophagy-related protein 13| Length = 974 Score = 30.0 bits (66), Expect = 2.7 Identities = 14/28 (50%), Positives = 17/28 (60%) Frame = -2 Query: 309 LHAPPAGAERERECGAGAHDAGDEVRRG 226 +H PA E ER+ AGA +G E RRG Sbjct: 873 IHPYPAEREAERDANAGASHSGTEDRRG 900
>DCUP_SYNEL (Q8DKW0) Uroporphyrinogen decarboxylase (EC 4.1.1.37) (URO-D) (UPD)| Length = 343 Score = 29.6 bits (65), Expect = 3.5 Identities = 12/30 (40%), Positives = 20/30 (66%) Frame = +3 Query: 354 PEVGVQPNLDDVQTVAPLPLVRAQRAAVVD 443 P VG+Q NLD V AP P+++ + A+++ Sbjct: 279 PSVGLQGNLDPVILFAPQPVLKERSLAIIE 308
>SIRT1_HUMAN (Q96EB6) NAD-dependent deacetylase sirtuin-1 (EC 3.5.1.-) (hSIRT1)| (hSIR2) (SIR2-like protein 1) Length = 747 Score = 29.6 bits (65), Expect = 3.5 Identities = 23/57 (40%), Positives = 25/57 (43%) Frame = -2 Query: 426 AALVPEGEERRFVHRQG*AVRRPRVQGQGLQRVPQEQDQLHAPPAGAERERECGAGA 256 AA P GE R +RPR G GL+R P E P GA ERE A A Sbjct: 24 AASSPAGEPLR---------KRPRRDGPGLERSPGE-------PGGAAPEREVPAAA 64
>APRR1_ARATH (Q9LKL2) Two-component response regulator-like APRR1| (Pseudo-response regulator 1) (Timing of CAB expression 1) (ABI3-interacting protein 1) Length = 618 Score = 29.3 bits (64), Expect = 4.6 Identities = 15/42 (35%), Positives = 26/42 (61%) Frame = -2 Query: 396 RFVHRQG*AVRRPRVQGQGLQRVPQEQDQLHAPPAGAERERE 271 R+V+R+ A RRPRV+GQ ++++ L+ P A+ + E Sbjct: 554 RYVNRKRLAERRPRVKGQFVRKMNGVNVDLNGQPDSADYDDE 595
>RS8_PORGI (Q7MTM7) 30S ribosomal protein S8| Length = 131 Score = 28.9 bits (63), Expect = 6.0 Identities = 17/41 (41%), Positives = 24/41 (58%) Frame = -3 Query: 437 DRGALRSYQRERSDGLYIVKVRLYADLGFKVRVFNACRKSK 315 D+G + +Y+ E +D I+KV L DL KV NA +K K Sbjct: 40 DKGYILNYKFEENDSQGIIKVALKYDLAHKV---NAIKKLK 77
>KITH_VZVP (P0C0E7) Thymidine kinase (EC 2.7.1.21)| Length = 341 Score = 28.9 bits (63), Expect = 6.0 Identities = 19/74 (25%), Positives = 35/74 (47%), Gaps = 17/74 (22%) Frame = -1 Query: 193 GTLTPAAVPTIMFSL-------TLVVCV----CHFGNVN------*TDGRAYILVCNRVY 65 G ++PAA+P ++F+L LVVC H V+ T +++V VY Sbjct: 147 GDMSPAALPGLLFTLPAEPPGTNLVVCTVSLPSHLSRVSKRARPGETVNLPFVMVLRNVY 206 Query: 64 VLSFSLDVYISMNN 23 ++ + +++ NN Sbjct: 207 IMLINTIIFLKTNN 220
>KITH_VZVO (P0C0E6) Thymidine kinase (EC 2.7.1.21)| Length = 341 Score = 28.9 bits (63), Expect = 6.0 Identities = 19/74 (25%), Positives = 35/74 (47%), Gaps = 17/74 (22%) Frame = -1 Query: 193 GTLTPAAVPTIMFSL-------TLVVCV----CHFGNVN------*TDGRAYILVCNRVY 65 G ++PAA+P ++F+L LVVC H V+ T +++V VY Sbjct: 147 GDMSPAALPGLLFTLPAEPPGTNLVVCTVSLPSHLSRVSKRARPGETVNLPFVMVLRNVY 206 Query: 64 VLSFSLDVYISMNN 23 ++ + +++ NN Sbjct: 207 IMLINTIIFLKTNN 220
>KITH_VZVG (P14343) Thymidine kinase (EC 2.7.1.21)| Length = 341 Score = 28.9 bits (63), Expect = 6.0 Identities = 19/74 (25%), Positives = 35/74 (47%), Gaps = 17/74 (22%) Frame = -1 Query: 193 GTLTPAAVPTIMFSL-------TLVVCV----CHFGNVN------*TDGRAYILVCNRVY 65 G ++PAA+P ++F+L LVVC H V+ T +++V VY Sbjct: 147 GDMSPAALPGLLFTLPAEPPGTNLVVCTVSLPSHLSRVSKRARPGETVNLPFVMVLRNVY 206 Query: 64 VLSFSLDVYISMNN 23 ++ + +++ NN Sbjct: 207 IMLINTIIFLKTNN 220
>KITH_VZVE (P0C0E5) Thymidine kinase (EC 2.7.1.21)| Length = 341 Score = 28.9 bits (63), Expect = 6.0 Identities = 19/74 (25%), Positives = 35/74 (47%), Gaps = 17/74 (22%) Frame = -1 Query: 193 GTLTPAAVPTIMFSL-------TLVVCV----CHFGNVN------*TDGRAYILVCNRVY 65 G ++PAA+P ++F+L LVVC H V+ T +++V VY Sbjct: 147 GDMSPAALPGLLFTLPAEPPGTNLVVCTVSLPSHLSRVSKRARPGETVNLPFVMVLRNVY 206 Query: 64 VLSFSLDVYISMNN 23 ++ + +++ NN Sbjct: 207 IMLINTIIFLKTNN 220
>KITH_VZVD (P09250) Thymidine kinase (EC 2.7.1.21)| Length = 341 Score = 28.9 bits (63), Expect = 6.0 Identities = 19/74 (25%), Positives = 35/74 (47%), Gaps = 17/74 (22%) Frame = -1 Query: 193 GTLTPAAVPTIMFSL-------TLVVCV----CHFGNVN------*TDGRAYILVCNRVY 65 G ++PAA+P ++F+L LVVC H V+ T +++V VY Sbjct: 147 GDMSPAALPGLLFTLPAEPPGTNLVVCTVSLPSHLSRVSKRARPGETVNLPFVMVLRNVY 206 Query: 64 VLSFSLDVYISMNN 23 ++ + +++ NN Sbjct: 207 IMLINTIIFLKTNN 220
>KITH_VZV7 (P14342) Thymidine kinase (EC 2.7.1.21)| Length = 341 Score = 28.9 bits (63), Expect = 6.0 Identities = 19/74 (25%), Positives = 35/74 (47%), Gaps = 17/74 (22%) Frame = -1 Query: 193 GTLTPAAVPTIMFSL-------TLVVCV----CHFGNVN------*TDGRAYILVCNRVY 65 G ++PAA+P ++F+L LVVC H V+ T +++V VY Sbjct: 147 GDMSPAALPGLLFTLPAEPPGTNLVVCTVSLPSHLSRVSKRARPGETVNLPFVMVLRNVY 206 Query: 64 VLSFSLDVYISMNN 23 ++ + +++ NN Sbjct: 207 IMLINTIIFLKTNN 220 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 48,757,151 Number of Sequences: 219361 Number of extensions: 820957 Number of successful extensions: 2455 Number of sequences better than 10.0: 13 Number of HSP's better than 10.0 without gapping: 2348 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2455 length of database: 80,573,946 effective HSP length: 102 effective length of database: 58,199,124 effective search space used: 2677159704 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
