ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbart22c12 |
|---|---|
| Clone Library Name | barley_pub |
>ZNT2_HUMAN (Q9BRI3) Zinc transporter 2 (ZnT-2) (Solute carrier family 30| member 2) Length = 323 Score = 29.6 bits (65), Expect = 4.0 Identities = 11/23 (47%), Positives = 15/23 (65%) Frame = +3 Query: 12 IQNLNLALQTNHICRYTSGPDNH 80 +Q + LA Q+NH C GPD+H Sbjct: 40 LQAIELAAQSNHHCHAQKGPDSH 62
>NEF_SIVMA (P31818) Nef protein (Negative factor) (F-protein) (3'ORF)| Length = 262 Score = 29.6 bits (65), Expect = 4.0 Identities = 15/45 (33%), Positives = 22/45 (48%) Frame = -3 Query: 402 DDIWDDVPEWKTLPVVQRITLDVIARVEEEGRLKAISVKKVRKSL 268 DD W +VP WK P + + EE G +S ++VR+ L Sbjct: 203 DDPWGEVPAWKFDPTLAYTYEAYVRYPEEFGSKSGLSEEEVRRRL 247
>VOLD_BPP2 (P13520) Overcoming lysogenization defect protein| Length = 586 Score = 29.3 bits (64), Expect = 5.2 Identities = 19/79 (24%), Positives = 32/79 (40%), Gaps = 18/79 (22%) Frame = -3 Query: 426 LERDITEEDDIWDDVPEWKTLPVVQRITLDVIARVEEEGRLKAI---------------- 295 L+ + E D++D V+Q IT D ++ + EE + K Sbjct: 48 LDGSLISESDVYDPTHPVSVEGVIQGITDDTLSLLTEENQQKIAPFIIDGTLTFARRQEF 107 Query: 294 --SVKKVRKSLEIADATSW 244 K +KSL++ D T+W Sbjct: 108 NKETGKAKKSLDVYDGTTW 126
>GNPTA_MOUSE (Q69ZN6) N-acetylglucosamine-1-phosphotransferase subunits| alpha/beta precursor (EC 2.7.8.17) (GlcNAc-1-phosphotransferase alpha/beta subunits) (UDP-N-acetylglucosamine-1-phosphotransferase alpha/beta subunits) (Stealth protein GNPTAB) [Conta Length = 1235 Score = 28.9 bits (63), Expect = 6.8 Identities = 11/51 (21%), Positives = 29/51 (56%) Frame = -3 Query: 414 ITEEDDIWDDVPEWKTLPVVQRITLDVIARVEEEGRLKAISVKKVRKSLEI 262 + + D ++DVP+ K P ++R ++ R +EE ++ +++ + K ++ Sbjct: 659 LPQADVPFEDVPKEKRFPKIRRHDVNATGRFQEEVKIPRVNISLLPKEAQV 709
>IF2P_HALSA (Q9HNQ2) Probable translation initiation factor IF-2| Length = 600 Score = 28.9 bits (63), Expect = 6.8 Identities = 14/35 (40%), Positives = 20/35 (57%) Frame = -3 Query: 420 RDITEEDDIWDDVPEWKTLPVVQRITLDVIARVEE 316 RDI E D++W D+PE + Q +T D+ A E Sbjct: 548 RDIKEGDELWVDLPEKHAKVLDQELTSDLPADERE 582
>GPDA_BARQU (Q6G0U8) Glycerol-3-phosphate dehydrogenase [NAD(P)+] (EC 1.1.1.94)| (NAD(P)H-dependent glycerol-3-phosphate dehydrogenase) Length = 340 Score = 28.5 bits (62), Expect = 8.9 Identities = 18/55 (32%), Positives = 30/55 (54%), Gaps = 8/55 (14%) Frame = +2 Query: 236 RLLQEVASAISKDFL--------TFFTDIALSLPSSSTLAMTSSVIRWTTGKVFH 376 RLLQEVA I D + TF ++A+ LP++ T+A +++ ++FH Sbjct: 116 RLLQEVAREILGDKIPLAIFSGPTFAKELAIGLPTAITVAASNAEFSEELQQLFH 170
>GPDA_BARHE (Q6G518) Glycerol-3-phosphate dehydrogenase [NAD(P)+] (EC 1.1.1.94)| (NAD(P)H-dependent glycerol-3-phosphate dehydrogenase) Length = 340 Score = 28.5 bits (62), Expect = 8.9 Identities = 18/55 (32%), Positives = 29/55 (52%), Gaps = 8/55 (14%) Frame = +2 Query: 236 RLLQEVASAISKDFL--------TFFTDIALSLPSSSTLAMTSSVIRWTTGKVFH 376 RLLQEVA I D + TF ++A+ LP++ T+A + + ++FH Sbjct: 116 RLLQEVAREILGDKIPLAVFSGPTFAKELAIGLPTAITIAASDTEFSEELQQLFH 170
>NPD_BACSU (O07595) NAD-dependent deacetylase (EC 3.5.1.-) (Regulatory protein| SIR2 homolog) Length = 247 Score = 28.5 bits (62), Expect = 8.9 Identities = 23/72 (31%), Positives = 31/72 (43%) Frame = +1 Query: 220 GDVRSQAAPRSSVRYL*RFPHLLHRYSLEPSLFLNPGDDVKCDSLDHRQGFPLWNIVPDV 399 G +++ A P RY PHLL R E + N GD C ++ + DV Sbjct: 119 GSIQTAACPACGARY--DLPHLLEREVPECTAAGNNGDI--CGTV----------LKTDV 164 Query: 400 VLFGDVPLELQT 435 VLFGD + T Sbjct: 165 VLFGDAVMHFDT 176
>KLK3_MACMU (P33619) Prostate-specific antigen precursor (EC 3.4.21.77) (PSA)| (Kallikrein-3) (Semenogelase) Length = 261 Score = 28.5 bits (62), Expect = 8.9 Identities = 22/60 (36%), Positives = 28/60 (46%), Gaps = 3/60 (5%) Frame = +1 Query: 274 FPHLLHRYSLEPSLFLNPGDDVKCDSLDHRQGFPLWNIVPDVVLFGDVPL---ELQTEFY 444 FPH L+ SL + +L PGDD D + R P + D V D+P EL T Y Sbjct: 96 FPHPLYNMSLLKNRYLGPGDDSSHDLMLLRLSEPA--EITDAVQVLDLPTWEPELGTTCY 153
>KLK3_MACFA (Q6DT45) Prostate-specific antigen precursor (EC 3.4.21.77) (PSA)| (Kallikrein-3) (Semenogelase) Length = 261 Score = 28.5 bits (62), Expect = 8.9 Identities = 22/60 (36%), Positives = 28/60 (46%), Gaps = 3/60 (5%) Frame = +1 Query: 274 FPHLLHRYSLEPSLFLNPGDDVKCDSLDHRQGFPLWNIVPDVVLFGDVPL---ELQTEFY 444 FPH L+ SL + +L PGDD D + R P + D V D+P EL T Y Sbjct: 96 FPHPLYNMSLLKNRYLGPGDDSSHDLMLLRLSEPA--EITDAVQVLDLPTWEPELGTTCY 153
>KLK3_HUMAN (P07288) Prostate-specific antigen precursor (EC 3.4.21.77) (PSA)| (Kallikrein-3) (Semenogelase) (Gamma-seminoprotein) (Seminin) (P-30 antigen) Length = 261 Score = 28.5 bits (62), Expect = 8.9 Identities = 19/51 (37%), Positives = 25/51 (49%) Frame = +1 Query: 274 FPHLLHRYSLEPSLFLNPGDDVKCDSLDHRQGFPLWNIVPDVVLFGDVPLE 426 FPH L+ SL + FL PGDD D + R P + D V D+P + Sbjct: 96 FPHPLYDMSLLKNRFLRPGDDSSHDLMLLRLSEPA--ELTDAVKVMDLPTQ 144 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 59,815,593 Number of Sequences: 219361 Number of extensions: 1052246 Number of successful extensions: 3337 Number of sequences better than 10.0: 11 Number of HSP's better than 10.0 without gapping: 3258 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3335 length of database: 80,573,946 effective HSP length: 103 effective length of database: 57,979,763 effective search space used: 3014947676 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
