ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbart22c12 |
|---|---|
| Clone Library Name | barley_pub |
>ref|XM_469891.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1278 Score = 93.7 bits (47), Expect = 5e-16 Identities = 175/215 (81%), Gaps = 2/215 (0%) Strand = Plus / Minus Query: 230 gaagtcaggctgctccaagaagtagcgtccgctatctcta-aagatttcctcaccttctt 288 ||||||| |||||||||||||| ||||||| ||| || | ||| ||| | |||||||| Sbjct: 1205 gaagtcaagctgctccaagaagaagcgtccacta-ctggataaggttttttaaccttctt 1147 Query: 289 caccgatatagccttgagccttccctcttcctcaaccctggcgatgacgtcaagtgtgat 348 ||| || |||||||| ||||| || ||||| |||||| | || | || ||||||| || Sbjct: 1146 cactgacatagccttcagcctgccttcttcttcaaccttagctacaacatcaagtgcgac 1087 Query: 349 tcgctggaccacaggcaaggttttccactctggaacatcgtcccagatgtcgtcctcttc 408 |||||||||| ||| | |||||||||| | || || ||||||||| | |||||||| Sbjct: 1086 gcgctggaccataggtactgttttccacttggaaatattttcccagatgccatcctcttc 1027 Query: 409 ggtgatgtccctctcgagctccaaacggaatttta 443 |||||||||||||| ||||||||||||||||||| Sbjct: 1026 agtgatgtccctctcaagctccaaacggaatttta 992
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 93.7 bits (47), Expect = 5e-16 Identities = 175/215 (81%), Gaps = 2/215 (0%) Strand = Plus / Minus Query: 230 gaagtcaggctgctccaagaagtagcgtccgctatctcta-aagatttcctcaccttctt 288 ||||||| |||||||||||||| ||||||| ||| || | ||| ||| | |||||||| Sbjct: 31377612 gaagtcaagctgctccaagaagaagcgtccacta-ctggataaggttttttaaccttctt 31377554 Query: 289 caccgatatagccttgagccttccctcttcctcaaccctggcgatgacgtcaagtgtgat 348 ||| || |||||||| ||||| || ||||| |||||| | || | || ||||||| || Sbjct: 31377553 cactgacatagccttcagcctgccttcttcttcaaccttagctacaacatcaagtgcgac 31377494 Query: 349 tcgctggaccacaggcaaggttttccactctggaacatcgtcccagatgtcgtcctcttc 408 |||||||||| ||| | |||||||||| | || || ||||||||| | |||||||| Sbjct: 31377493 gcgctggaccataggtactgttttccacttggaaatattttcccagatgccatcctcttc 31377434 Query: 409 ggtgatgtccctctcgagctccaaacggaatttta 443 |||||||||||||| ||||||||||||||||||| Sbjct: 31377433 agtgatgtccctctcaagctccaaacggaatttta 31377399 Score = 40.1 bits (20), Expect = 6.3 Identities = 35/40 (87%) Strand = Plus / Minus Query: 74 caatcatacacgaaattgatgtatatgtgcaatttcctat 113 |||| ||||||| | ||||| |||||||||||||||||| Sbjct: 31377757 caattatacacggatttgattaatatgtgcaatttcctat 31377718
>gb|AC099043.6| Oryza sativa chromosome 3 BAC OSJNBa0079B15 genomic sequence, complete sequence Length = 159091 Score = 93.7 bits (47), Expect = 5e-16 Identities = 175/215 (81%), Gaps = 2/215 (0%) Strand = Plus / Plus Query: 230 gaagtcaggctgctccaagaagtagcgtccgctatctcta-aagatttcctcaccttctt 288 ||||||| |||||||||||||| ||||||| ||| || | ||| ||| | |||||||| Sbjct: 118188 gaagtcaagctgctccaagaagaagcgtccacta-ctggataaggttttttaaccttctt 118246 Query: 289 caccgatatagccttgagccttccctcttcctcaaccctggcgatgacgtcaagtgtgat 348 ||| || |||||||| ||||| || ||||| |||||| | || | || ||||||| || Sbjct: 118247 cactgacatagccttcagcctgccttcttcttcaaccttagctacaacatcaagtgcgac 118306 Query: 349 tcgctggaccacaggcaaggttttccactctggaacatcgtcccagatgtcgtcctcttc 408 |||||||||| ||| | |||||||||| | || || ||||||||| | |||||||| Sbjct: 118307 gcgctggaccataggtactgttttccacttggaaatattttcccagatgccatcctcttc 118366 Query: 409 ggtgatgtccctctcgagctccaaacggaatttta 443 |||||||||||||| ||||||||||||||||||| Sbjct: 118367 agtgatgtccctctcaagctccaaacggaatttta 118401 Score = 40.1 bits (20), Expect = 6.3 Identities = 35/40 (87%) Strand = Plus / Plus Query: 74 caatcatacacgaaattgatgtatatgtgcaatttcctat 113 |||| ||||||| | ||||| |||||||||||||||||| Sbjct: 118043 caattatacacggatttgattaatatgtgcaatttcctat 118082
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 93.7 bits (47), Expect = 5e-16 Identities = 175/215 (81%), Gaps = 2/215 (0%) Strand = Plus / Minus Query: 230 gaagtcaggctgctccaagaagtagcgtccgctatctcta-aagatttcctcaccttctt 288 ||||||| |||||||||||||| ||||||| ||| || | ||| ||| | |||||||| Sbjct: 31468128 gaagtcaagctgctccaagaagaagcgtccacta-ctggataaggttttttaaccttctt 31468070 Query: 289 caccgatatagccttgagccttccctcttcctcaaccctggcgatgacgtcaagtgtgat 348 ||| || |||||||| ||||| || ||||| |||||| | || | || ||||||| || Sbjct: 31468069 cactgacatagccttcagcctgccttcttcttcaaccttagctacaacatcaagtgcgac 31468010 Query: 349 tcgctggaccacaggcaaggttttccactctggaacatcgtcccagatgtcgtcctcttc 408 |||||||||| ||| | |||||||||| | || || ||||||||| | |||||||| Sbjct: 31468009 gcgctggaccataggtactgttttccacttggaaatattttcccagatgccatcctcttc 31467950 Query: 409 ggtgatgtccctctcgagctccaaacggaatttta 443 |||||||||||||| ||||||||||||||||||| Sbjct: 31467949 agtgatgtccctctcaagctccaaacggaatttta 31467915 Score = 40.1 bits (20), Expect = 6.3 Identities = 35/40 (87%) Strand = Plus / Minus Query: 74 caatcatacacgaaattgatgtatatgtgcaatttcctat 113 |||| ||||||| | ||||| |||||||||||||||||| Sbjct: 31468273 caattatacacggatttgattaatatgtgcaatttcctat 31468234
>dbj|AK062731.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-106-E05, full insert sequence Length = 813 Score = 93.7 bits (47), Expect = 5e-16 Identities = 175/215 (81%), Gaps = 2/215 (0%) Strand = Plus / Minus Query: 230 gaagtcaggctgctccaagaagtagcgtccgctatctcta-aagatttcctcaccttctt 288 ||||||| |||||||||||||| ||||||| ||| || | ||| ||| | |||||||| Sbjct: 594 gaagtcaagctgctccaagaagaagcgtccacta-ctggataaggttttttaaccttctt 536 Query: 289 caccgatatagccttgagccttccctcttcctcaaccctggcgatgacgtcaagtgtgat 348 ||| || |||||||| ||||| || ||||| |||||| | || | || ||||||| || Sbjct: 535 cactgacatagccttcagcctgccttcttcttcaaccttagctacaacatcaagtgcgac 476 Query: 349 tcgctggaccacaggcaaggttttccactctggaacatcgtcccagatgtcgtcctcttc 408 |||||||||| ||| | |||||||||| | || || ||||||||| | |||||||| Sbjct: 475 gcgctggaccataggtactgttttccacttggaaatattttcccagatgccatcctcttc 416 Query: 409 ggtgatgtccctctcgagctccaaacggaatttta 443 |||||||||||||| ||||||||||||||||||| Sbjct: 415 agtgatgtccctctcaagctccaaacggaatttta 381 Score = 40.1 bits (20), Expect = 6.3 Identities = 35/40 (87%) Strand = Plus / Minus Query: 74 caatcatacacgaaattgatgtatatgtgcaatttcctat 113 |||| ||||||| | ||||| |||||||||||||||||| Sbjct: 739 caattatacacggatttgattaatatgtgcaatttcctat 700
>gb|AY111251.1| Zea mays CL35669_1 mRNA sequence Length = 636 Score = 58.0 bits (29), Expect = 3e-05 Identities = 38/41 (92%) Strand = Plus / Plus Query: 79 atacacgaaattgatgtatatgtgcaatttcctatcagccc 119 ||||| ||||| |||||||||||| |||||||||||||||| Sbjct: 81 atacatgaaatcgatgtatatgtgtaatttcctatcagccc 121 Score = 56.0 bits (28), Expect = 1e-04 Identities = 67/80 (83%) Strand = Plus / Plus Query: 368 gttttccactctggaacatcgtcccagatgtcgtcctcttcggtgatgtccctctcgagc 427 |||||||||||||||||||| ||||||||| || || || |||| ||||| || | | Sbjct: 361 gttttccactctggaacatcttcccagatgggatcatcctcagtgacatccctttcaaac 420 Query: 428 tccaaacggaattttaccag 447 |||||||||||||| ||||| Sbjct: 421 tccaaacggaatttcaccag 440 Score = 44.1 bits (22), Expect = 0.40 Identities = 31/34 (91%) Strand = Plus / Plus Query: 276 tcctcaccttcttcaccgatatagccttgagcct 309 |||| |||||||||||||| |||||||| ||||| Sbjct: 269 tcctaaccttcttcaccgaaatagccttcagcct 302
>gb|CP000155.1| Hahella chejuensis KCTC 2396, complete genome Length = 7215267 Score = 46.1 bits (23), Expect = 0.10 Identities = 26/27 (96%) Strand = Plus / Plus Query: 313 ctcttcctcaaccctggcgatgacgtc 339 ||||||||||||| ||||||||||||| Sbjct: 6956793 ctcttcctcaaccatggcgatgacgtc 6956819
>ref|XM_751926.1| Ustilago maydis 521 hypothetical protein (UM00872.1) partial mRNA Length = 1920 Score = 42.1 bits (21), Expect = 1.6 Identities = 24/25 (96%) Strand = Plus / Minus Query: 404 tcttcggtgatgtccctctcgagct 428 ||||| ||||||||||||||||||| Sbjct: 623 tcttccgtgatgtccctctcgagct 599
>gb|AC110538.6| Mus musculus chromosome 5, clone RP23-71L23, complete sequence Length = 205923 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 154 ctgttaccattttacatcca 173 |||||||||||||||||||| Sbjct: 190440 ctgttaccattttacatcca 190421
>gb|AC158754.4| Mus musculus chromosome 5, clone RP24-167K16, complete sequence Length = 131339 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 154 ctgttaccattttacatcca 173 |||||||||||||||||||| Sbjct: 43849 ctgttaccattttacatcca 43868
>ref|XM_777465.1| PREDICTED: Strongylocentrotus purpuratus similar to CREB binding protein (LOC577224), mRNA Length = 8058 Score = 40.1 bits (20), Expect = 6.3 Identities = 23/24 (95%) Strand = Plus / Minus Query: 298 agccttgagccttccctcttcctc 321 ||||||||||||| |||||||||| Sbjct: 6192 agccttgagcctttcctcttcctc 6169
>emb|AL731596.3|OSJN00236 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0024J22, complete sequence Length = 174430 Score = 40.1 bits (20), Expect = 6.3 Identities = 23/24 (95%) Strand = Plus / Plus Query: 131 agaagtaaatagacaaggagaaac 154 |||||||| ||||||||||||||| Sbjct: 91934 agaagtaattagacaaggagaaac 91957
>emb|AL845281.5| Mouse DNA sequence from clone RP23-476B1 on chromosome 2, complete sequence Length = 195228 Score = 40.1 bits (20), Expect = 6.3 Identities = 26/28 (92%) Strand = Plus / Minus Query: 137 aaatagacaaggagaaactgttaccatt 164 ||||||| ||| |||||||||||||||| Sbjct: 66289 aaatagagaagaagaaactgttaccatt 66262
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete sequence Length = 35498469 Score = 40.1 bits (20), Expect = 6.3 Identities = 23/24 (95%) Strand = Plus / Plus Query: 131 agaagtaaatagacaaggagaaac 154 |||||||| ||||||||||||||| Sbjct: 13978054 agaagtaattagacaaggagaaac 13978077
>gb|AC073465.5| Homo sapiens BAC clone RP11-158L8 from 2, complete sequence Length = 135752 Score = 40.1 bits (20), Expect = 6.3 Identities = 23/24 (95%) Strand = Plus / Plus Query: 128 atcagaagtaaatagacaaggaga 151 |||||||| ||||||||||||||| Sbjct: 47323 atcagaagaaaatagacaaggaga 47346 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 3,702,038 Number of Sequences: 3902068 Number of extensions: 3702038 Number of successful extensions: 66742 Number of sequences better than 10.0: 15 Number of HSP's better than 10.0 without gapping: 15 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 66649 Number of HSP's gapped (non-prelim): 87 length of query: 467 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 445 effective length of database: 17,147,199,772 effective search space: 7630503898540 effective search space used: 7630503898540 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
