ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbart22c11
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1SSPN_MOUSE (Q62147) Sarcospan (K-ras oncogene-associated protein... 30 2.3
2LEU1_SALTY (P15875) 2-isopropylmalate synthase (EC 2.3.3.13) (Al... 29 5.1
3LEU1_SALTI (Q8Z9I0) 2-isopropylmalate synthase (EC 2.3.3.13) (Al... 29 5.1
4ASSY_BUCAP (Q8KA60) Argininosuccinate synthase (EC 6.3.4.5) (Cit... 28 6.7

>SSPN_MOUSE (Q62147) Sarcospan (K-ras oncogene-associated protein)|
           (Kirsten-Ras-associated protein)
          Length = 216

 Score = 30.0 bits (66), Expect = 2.3
 Identities = 17/57 (29%), Positives = 29/57 (50%), Gaps = 3/57 (5%)
 Frame = -1

Query: 214 LLLVCMICLMGPQQIVVFDVRNYVLLSSAIRPVICMRTVKFAC---TLTCQFWCSRS 53
           L ++C+   +  +  V F ++ +  L SA+  ++CM  V FA    +L  QF C  S
Sbjct: 75  LFMLCVSYQVDERTCVQFSMKVFYFLLSALGLMVCMLAVAFAAHHYSLLAQFTCETS 131



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>LEU1_SALTY (P15875) 2-isopropylmalate synthase (EC 2.3.3.13)|
           (Alpha-isopropylmalate synthase) (Alpha-IPM synthetase)
          Length = 522

 Score = 28.9 bits (63), Expect = 5.1
 Identities = 15/43 (34%), Positives = 20/43 (46%)
 Frame = +2

Query: 146 VVTYIEHHNLLRTHQADHTYEQQLITARTSVVGTGVDRHQHGL 274
           V T I HH + RT Q         I A  ++VG+G   H  G+
Sbjct: 256 VHTNINHHEIWRTSQTVSQICNMPIPANKAIVGSGAFAHSSGI 298



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>LEU1_SALTI (Q8Z9I0) 2-isopropylmalate synthase (EC 2.3.3.13)|
           (Alpha-isopropylmalate synthase) (Alpha-IPM synthetase)
          Length = 522

 Score = 28.9 bits (63), Expect = 5.1
 Identities = 15/43 (34%), Positives = 20/43 (46%)
 Frame = +2

Query: 146 VVTYIEHHNLLRTHQADHTYEQQLITARTSVVGTGVDRHQHGL 274
           V T I HH + RT Q         I A  ++VG+G   H  G+
Sbjct: 256 VHTNINHHEIWRTSQTVSQICNMPIPANKAIVGSGAFAHSSGI 298



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>ASSY_BUCAP (Q8KA60) Argininosuccinate synthase (EC 6.3.4.5)|
           (Citrulline--aspartate ligase)
          Length = 401

 Score = 28.5 bits (62), Expect = 6.7
 Identities = 11/30 (36%), Positives = 20/30 (66%)
 Frame = -1

Query: 151 NYVLLSSAIRPVICMRTVKFACTLTCQFWC 62
           NY+L ++  RP+I  + V+FA ++  +F C
Sbjct: 88  NYLLGTAIARPIIAKKQVEFASSIGAKFLC 117


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 47,024,585
Number of Sequences: 219361
Number of extensions: 752826
Number of successful extensions: 1710
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1692
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1710
length of database: 80,573,946
effective HSP length: 101
effective length of database: 58,418,485
effective search space used: 2278320915
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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