>NAC48_ORYSA (Q7F2L3) NAC domain-containing protein 48 (ONAC048)|
          Length = 303

 Score = 90.1 bits (222), Expect = 3e-18
 Identities = 52/84 (61%), Positives = 58/84 (69%), Gaps = 16/84 (19%)
 Frame = -1

Query: 493 MPRAHADSSCSEHVLTA--SCERPEVQSQPKISDWERTFASTAPGVNPAAGL--PAG--- 335
           MPR HADSSCSE VL+   +CE   VQSQPKIS+WERTFA+  P +NPAA +  PAG   
Sbjct: 224 MPRLHADSSCSEQVLSPEFACE---VQSQPKISEWERTFATVGP-INPAASILDPAGSGG 279

Query: 334 ---------DPLLQDILMYWGKPF 290
                    DPLLQDILMYWGKPF
Sbjct: 280 LGGLGGGGSDPLLQDILMYWGKPF 303

>CUTL2_HUMAN (O14529) Homeobox protein cut-like 2 (Homeobox protein Cux-2)|
           (Cut-like 2)
          Length = 1424

 Score = 35.8 bits (81), Expect = 0.064
 Identities = 26/93 (27%), Positives = 39/93 (41%), Gaps = 9/93 (9%)
 Frame = +3

Query: 240 SAAPKPHVQPPSRTDSQKGLPQYMRMSWRSGSPAGSPAAGLTPGA-VEANVRSQSEILG- 413
           S  P P  +P   T SQ G P  ++    SG PA +P   L+P A V++ +R     +G 
Sbjct: 660 SVPPSPPERPSLATASQNGAPALVKQEEGSGGPAQAPLPVLSPAAFVQSIIRKVKSEIGD 719

Query: 414 -------WLCTSGRSHDAVSTCSEQLESACARG 491
                  W    G      ++ S  L S+ + G
Sbjct: 720 AGYFDHHWASDRGLLSRPYASVSPSLSSSSSSG 752

>Y741_CHLMU (Q9PJT6) Hypothetical protein TC0741 precursor|
          Length = 1007

 Score = 35.4 bits (80), Expect = 0.084
 Identities = 20/75 (26%), Positives = 38/75 (50%), Gaps = 5/75 (6%)
 Frame = +2

Query: 194 IDSGGSPESPRLVSSLSRAQTTRAAAESDGFSERLAPVHE---DVLEERVAGRQPRRRVD 364
           +  GG+P  P +++++ +   T    E+ G +ER  P ++   D++ +       +  V 
Sbjct: 746 VGDGGTPSGPDILAAVRKHLDTVYPGENGGSTERPLPANQNLGDIIHDVEQNGSAKETVV 805

Query: 365 A--RGGGGERSLPVG 403
           +  RGGGG  S P+G
Sbjct: 806 SPYRGGGGNTSSPIG 820

>NAC2_ARATH (Q39013) NAC domain-containing protein 2 (ANAC002)|
          Length = 289

 Score = 33.1 bits (74), Expect = 0.42
 Identities = 27/83 (32%), Positives = 37/83 (44%), Gaps = 15/83 (18%)
 Frame = -1

Query: 493 MPRAHA-DSSCSEHVLTASCERPEVQSQPKISDWERTFAST------------APGVNPA 353
           +P+ H  DSSCSE V++      EVQS+PK  DW                   A   N  
Sbjct: 208 VPKLHTTDSSCSEQVVSPEFTS-EVQSEPKWKDWSAVSNDNNNTLDFGFNYIDATVDNAF 266

Query: 352 AGLPAGDPL--LQDILMYWGKPF 290
            G  + + +  LQD+ MY  KP+
Sbjct: 267 GGGGSSNQMFPLQDMFMYMQKPY 289

>PER3_HUMAN (P56645) Period circadian protein 3 (hPER3)|
          Length = 1201

 Score = 32.0 bits (71), Expect = 0.93
 Identities = 30/98 (30%), Positives = 39/98 (39%), Gaps = 2/98 (2%)
 Frame = +3

Query: 90   PSSNTPGLPRLIAAVRDSLYTIDTFHPTATSICCR*IPAARPSHPGWFPLSAAPKPHVQP 269
            P    P  P   A    S    +  HPTA+++     P   PSHP    LS        P
Sbjct: 977  PPRENPSHPTASALSTGSPPMKNPSHPTASALSTGSPPMKNPSHPTASTLSMG-----LP 1031

Query: 270  PSRTDSQKGLPQYMRMSWRSGSPA--GSPAAGLTPGAV 377
            PSRT S          S  S SP+  GS A+G +  ++
Sbjct: 1032 PSRTPSHPTATVLSTGSPPSESPSRTGSAASGSSDSSI 1069

>PRD16_HUMAN (Q9HAZ2) PR domain zinc finger protein 16 (PR domain-containing|
           protein 16) (Transcription factor MEL1)
          Length = 1276

 Score = 30.4 bits (67), Expect = 2.7
 Identities = 19/54 (35%), Positives = 24/54 (44%)
 Frame = +3

Query: 201 PAARPSHPGWFPLSAAPKPHVQPPSRTDSQKGLPQYMRMSWRSGSPAGSPAAGL 362
           PA  P  PG FP S  P+P + PP+        P       +  SP G+PA  L
Sbjct: 508 PALTPGFPGIFPPSLYPRPPLLPPTPLLKS---PLNHTQDAKLPSPLGNPALPL 558

>M3K14_MOUSE (Q9WUL6) Mitogen-activated protein kinase kinase kinase 14 (EC|
           2.7.11.25) (NF-kappa beta-inducing kinase)
           (Serine/threonine-protein kinase NIK)
          Length = 942

 Score = 30.4 bits (67), Expect = 2.7
 Identities = 21/68 (30%), Positives = 29/68 (42%)
 Frame = +3

Query: 54  HIHHDQVQYSLRPSSNTPGLPRLIAAVRDSLYTIDTFHPTATSICCR*IPAARPSHPGWF 233
           H+   +    LRP    P L +LI+ ++   +     HP AT       P   P+HP  F
Sbjct: 207 HLCFKKQDEGLRPVLPRPELHKLISPLQCLNHVWKLHHPQATG------PRPHPTHP--F 258

Query: 234 PLSAAPKP 257
           P S  P P
Sbjct: 259 PYSGMPHP 266

>FUT3_PONPY (Q8HYJ5) Galactoside 3(4)-L-fucosyltransferase (EC 2.4.1.65) (Blood|
           group Lewis alpha-4-fucosyltransferase) (Lewis FT)
           (Fucosyltransferase 3) (FUCT-III)
           (Alpha-3/4-fucosyltransferase)
          Length = 372

 Score = 30.4 bits (67), Expect = 2.7
 Identities = 22/87 (25%), Positives = 37/87 (42%), Gaps = 5/87 (5%)
 Frame = +3

Query: 201 PAARPSHPGWFPLSAAPKPHVQPPSRTDSQKGLPQYMRMSWRSGSPAGSPAAGLTPGAVE 380
           P+ RP    W   S  P P+ Q     D    L     MS+RS S   +P   L P + +
Sbjct: 134 PSPRPQGQRWIWFSLEPPPNCQHLEALDGYFNL----TMSYRSDSDIFTPYGWLEPWSGQ 189

Query: 381 -----ANVRSQSEILGWLCTSGRSHDA 446
                 N+ +++E++ W  ++ +   A
Sbjct: 190 PAHPPLNLSAKTELVAWAVSNWKPDSA 216

>ZCH14_MOUSE (Q8VIG0) Zinc finger CCHC domain-containing protein 14 (BDG-29)|
          Length = 956

 Score = 30.4 bits (67), Expect = 2.7
 Identities = 29/110 (26%), Positives = 45/110 (40%), Gaps = 11/110 (10%)
 Frame = +3

Query: 90  PSSNTPGLPRLIAAVRDSLYTIDT-----------FHPTATSICCR*IPAARPSHPGWFP 236
           P++    +P  I   R +LYT +T             P   S C     A+  SHP    
Sbjct: 665 PNNGQISVPPAIMNPRTALYTANTKVAFSAVSSVPVGPLQGSFCANSNTASPSSHPSTSF 724

Query: 237 LSAAPKPHVQPPSRTDSQKGLPQYMRMSWRSGSPAGSPAAGLTPGAVEAN 386
            S A  P    PS + +   +P+    S+ SG  AGS + G  P + +++
Sbjct: 725 ASMASLPSCPAPSSSPALSSVPE---SSFYSGG-AGSSSPGNIPASSQSH 770

>EPHAA_HUMAN (Q5JZY3) Ephrin type-A receptor 10 precursor (EC 2.7.10.1)|
          Length = 1008

 Score = 30.0 bits (66), Expect = 3.5
 Identities = 14/35 (40%), Positives = 19/35 (54%)
 Frame = +3

Query: 300 PQYMRMSWRSGSPAGSPAAGLTPGAVEANVRSQSE 404
           PQ + +SWR   PAG+P A  T   +    + QSE
Sbjct: 467 PQSVSLSWREPIPAGAPGANDTEYEIRYYEKGQSE 501

>TAF1C_HUMAN (Q15572) TATA box-binding protein-associated factor RNA polymerase I|
            subunit C (TATA box-binding protein-associated factor 1C)
            (TBP-associated factor 1C) (TBP-associated factor RNA
            polymerase I 110 kDa) (TAFI110)
          Length = 869

 Score = 30.0 bits (66), Expect = 3.5
 Identities = 26/90 (28%), Positives = 34/90 (37%), Gaps = 4/90 (4%)
 Frame = +3

Query: 213  PSHPGWFPLSAAPKPHVQPPSR----TDSQKGLPQYMRMSWRSGSPAGSPAAGLTPGAVE 380
            P  P W P  A P P   PPS+        +G+P   R   R    A  P    TPG   
Sbjct: 775  PHSPEWPPADALPLPPTTPPSQELTPDACAQGVPSEQRQMLRD-YMAKLPPQRDTPGCAT 833

Query: 381  ANVRSQSEILGWLCTSGRSHDAVSTCSEQL 470
                SQ+  +    T  + H  V + S+ L
Sbjct: 834  TPPHSQASSV--RATRSQQHTPVLSSSQPL 861

>DSCL1_HUMAN (Q8TD84) Down syndrome cell adhesion molecule-like protein 1|
            precursor (Down syndrome cell adhesion molecule 2)
          Length = 2053

 Score = 30.0 bits (66), Expect = 3.5
 Identities = 24/89 (26%), Positives = 39/89 (43%), Gaps = 4/89 (4%)
 Frame = +3

Query: 18   PNQSHIHSLVQIHIHHDQVQY-SLRPSSNTPGLPRLIAAVRDSLYTIDT---FHPTATSI 185
            P ++ I +L + +  H Q ++ +L P+S + GLP   A    S  T+       P   + 
Sbjct: 1925 PREASIRNLARTY--HTQARHLTLDPASKSLGLPHPGAPAAASTATLPQRTLAMPAPPAG 1982

Query: 186  CCR*IPAARPSHPGWFPLSAAPKPHVQPP 272
                 P   P+ P   P +A P P  +PP
Sbjct: 1983 TAPPAPGPTPAEPPTAPSAAPPAPSTEPP 2011

>Y2082_MYCTU (Q10690) Hypothetical protein Rv2082|
          Length = 721

 Score = 30.0 bits (66), Expect = 3.5
 Identities = 26/84 (30%), Positives = 33/84 (39%)
 Frame = +3

Query: 234 PLSAAPKPHVQPPSRTDSQKGLPQYMRMSWRSGSPAGSPAAGLTPGAVEANVRSQSEILG 413
           P   AP P   PP  T S    P    +    G P+  PAAG+ P A  A      + LG
Sbjct: 259 PFGTAPMPPGPPPPGTVSPPLPPSAPAVG--VGGPS-VPAAGMPPAAAAATAPLSPQSLG 315

Query: 414 WLCTSGRSHDAVSTCSEQLESACA 485
              T+G +    +    Q  SA A
Sbjct: 316 QSFTTGMTTGTPAAAGAQALSAGA 339

>CBPA_DICDI (P35085) Calcium-binding protein|
          Length = 467

 Score = 30.0 bits (66), Expect = 3.5
 Identities = 16/57 (28%), Positives = 23/57 (40%)
 Frame = +3

Query: 201 PAARPSHPGWFPLSAAPKPHVQPPSRTDSQKGLPQYMRMSWRSGSPAGSPAAGLTPG 371
           P  +P  PG +P     +P   PP     Q+G+   +  +   G P   P  G  PG
Sbjct: 167 PPQQPGQPGAYPPQQPGQPGAYPP-----QQGVQNTLAKTGAPGQPGVPPPQGAYPG 218

>YA4E_SCHPO (Q09731) Hypothetical WD-repeat protein C31A2.14 in chromosome I|
          Length = 962

 Score = 29.6 bits (65), Expect = 4.6
 Identities = 27/105 (25%), Positives = 40/105 (38%), Gaps = 19/105 (18%)
 Frame = +3

Query: 231 FPLSAAPK---PHVQPPSR---------TDSQKGLPQYMRMSWRSG-------SPAGSPA 353
           FPL   P+   P +Q PS          TDS  G P Y  +  R            GSP 
Sbjct: 598 FPLEPPPESPGPSLQIPSNNPVYTNLTDTDSMMGAPDYFSIPARQNRNRKPHTEVVGSPT 657

Query: 354 AGLTPGAVEANVRSQSEILGWLCTSGRSHDAVSTCSEQLESACAR 488
              T   +   V  +   +G L   GRS  + S  ++ ++++  R
Sbjct: 658 VVRTKEIIPPKVTREGSFMGRLKKLGRSKSSKSLQTDFMKASVER 702

>CABIN_RAT (O88480) Calcineurin-binding protein Cabin 1 (Calcineurin|
           inhibitor) (CAIN)
          Length = 2182

 Score = 29.6 bits (65), Expect = 4.6
 Identities = 17/48 (35%), Positives = 21/48 (43%)
 Frame = +1

Query: 49  KSIYTMTKYSTLCVPPRTHRGSRVSSPPSVTPCTLLIPFIQRLRVSAV 192
           +S+  M  + T C PPR   G R+       P  LL P I    VS V
Sbjct: 275 ESLLAMYNHLTTCEPPRPSLGKRIDLSDYQDPSQLLAPSIVVTPVSVV 322

>TISD_HUMAN (P47974) Butyrate response factor 2 (TIS11D protein) (EGF-response|
           factor 2) (ERF-2)
          Length = 492

 Score = 29.6 bits (65), Expect = 4.6
 Identities = 23/59 (38%), Positives = 27/59 (45%), Gaps = 3/59 (5%)
 Frame = +3

Query: 204 AARPSHPGWF--PLSAAPKPHVQ-PPSRTDSQKGLPQYMRMSWRSGSPAGSPAAGLTPG 371
           AA PS P  F  P   +  P    PPS  DS      Y+  S  SGS +GS +  L PG
Sbjct: 420 AAPPSPPFSFQLPRRLSDSPVFDAPPSPPDSLSDRDSYLSGSLSSGSLSGSESPSLDPG 478

>NAC71_ORYSA (Q53NF7) NAC domain-containing protein 71 (ONAC071)|
          Length = 329

 Score = 29.3 bits (64), Expect = 6.0
 Identities = 13/18 (72%), Positives = 14/18 (77%)
 Frame = -1

Query: 493 MPRAHADSSCSEHVLTAS 440
           MPR H DSS SEHVL+ S
Sbjct: 237 MPRLHTDSSGSEHVLSPS 254

>FOXE1_MOUSE (Q8R2I0) Forkhead box protein E1 (Thyroid transcription factor 2)|
           (TTF-2)
          Length = 371

 Score = 29.3 bits (64), Expect = 6.0
 Identities = 27/86 (31%), Positives = 35/86 (40%), Gaps = 7/86 (8%)
 Frame = +3

Query: 198 IPAARPSHP-----GWFPLSAAPKPHVQPPSRTDSQK--GLPQYMRMSWRSGSPAGSPAA 356
           +PAARP++P     G+ P  AAP P   P +     +  GL     +S   G PA S A 
Sbjct: 182 VPAARPAYPGAVYAGYAPPLAAPPPVYYPAASPGPCRVFGLVPERPLSPDLG-PAPSAAG 240

Query: 357 GLTPGAVEANVRSQSEILGWLCTSGR 434
           G    A  A           +CT  R
Sbjct: 241 GSCAFAAAAGAAGTGSFQPAVCTGAR 266

>PRP_PIG (Q95JC9) Basic proline-rich protein precursor [Contains:|
           Proline-rich peptide SP-A (PRP-SP-A); Proline-rich
           peptide SP-B (PRP-SP-B); Parotid hormone (PH-Ab)]
          Length = 676

 Score = 29.3 bits (64), Expect = 6.0
 Identities = 20/65 (30%), Positives = 24/65 (36%), Gaps = 1/65 (1%)
 Frame = +3

Query: 201 PAARPSHPGWFPLSAAPKPHVQPPSRTDSQKGLPQYMRMSWRSGSPAGSPAAG-LTPGAV 377
           P   P  PG  P  A P P   PP+    Q   P   +   +   PAG P  G  +PG  
Sbjct: 399 PPPGPPPPGPAPPGARPPPPPPPPADEPQQGPAPSGDKPKKKPPPPAGPPPPGPPSPGPA 458

Query: 378 EANVR 392
               R
Sbjct: 459 PPGAR 463

>CEBPB_BOVIN (O02755) CCAAT/enhancer-binding protein beta (C/EBP beta)|
          Length = 348

 Score = 29.3 bits (64), Expect = 6.0
 Identities = 24/82 (29%), Positives = 34/82 (41%), Gaps = 1/82 (1%)
 Frame = +3

Query: 219 HPGWFPLSAAPKPHVQPPSRTDSQKGL-PQYMRMSWRSGSPAGSPAAGLTPGAVEANVRS 395
           HPG F     P P   PP+   ++ G  P   +    +G+P G  AAG+  G   A    
Sbjct: 153 HPGCFAPLHPPPPPPPPPAELKAEPGFEPADCKRKEEAGAPGGG-AAGMAAGFPYA---- 207

Query: 396 QSEILGWLCTSGRSHDAVSTCS 461
               LG+      S  ++ST S
Sbjct: 208 LRAYLGYQAVPSGSSGSLSTSS 229

>I11RA_PONPY (Q5RF19) Interleukin-11 receptor alpha chain precursor|
           (IL-11R-alpha) (IL-11RA)
          Length = 422

 Score = 28.9 bits (63), Expect = 7.8
 Identities = 31/117 (26%), Positives = 47/117 (40%), Gaps = 14/117 (11%)
 Frame = +3

Query: 99  NTPGLPRLIAAVRDSLYTIDTFHPTATSICCR*IPAARPS-HPGWFPLSAAPKPHVQPPS 275
           + PG PR + A     +T     P       +     RP+ HP W  +  A    V    
Sbjct: 228 SVPGYPRRLRAS----WTYPASWPRQPHFLLKFRLQYRPAQHPAWSTVEPAGLEEVI--- 280

Query: 276 RTDSQKGLPQYMRMS---------WRSGSPA--GSPAAGLTPGAVEA--NVRSQSEI 407
            TD+  GLP  +R+S         W + SP   G+P+ G  P  + A   + +Q E+
Sbjct: 281 -TDAVAGLPHAVRVSARDFLDAGTWSTWSPEAWGTPSTGTVPKEIPAWGQLHTQPEV 336

>IF2_PROAC (Q6A7M5) Translation initiation factor IF-2|
          Length = 964

 Score = 28.9 bits (63), Expect = 7.8
 Identities = 20/60 (33%), Positives = 25/60 (41%), Gaps = 2/60 (3%)
 Frame = +3

Query: 201 PAARPSHPGWFPLSAAPKPHVQPPSRTDSQKGLPQYMRMSWR--SGSPAGSPAAGLTPGA 374
           P  +P  P     S +PKP  +P  R     GLP   R   R  +G   G+P  G  P A
Sbjct: 164 PKPKPGAP-----SKSPKPGARPGPRPGGSAGLPSAARPGPRPGAGRRTGAPRPGNNPFA 218

>Y1836_MYCTU (Q50597) Hypothetical protein Rv1836c/MT1884|
          Length = 677

 Score = 28.9 bits (63), Expect = 7.8
 Identities = 22/89 (24%), Positives = 32/89 (35%), Gaps = 7/89 (7%)
 Frame = +3

Query: 213 PSHPGWFPLSAAPKPHVQPPSRTDSQKGLPQYMRMSWRSGSPAGSPAAGLTPGAVEANVR 392
           P  P W P  A P     PP      +G        W++G  +     G++ G + A V 
Sbjct: 71  PPRPDWEPTGAEPIAAAPPPLFRFGHRG-----PGDWQAGHRSADGRRGVSIGVIVALVA 125

Query: 393 SQSEILGWL-------CTSGRSHDAVSTC 458
               + G +         S RSH A + C
Sbjct: 126 VVVMVAGVILWRFFGDALSNRSHTAAARC 154

>KS6A4_MOUSE (Q9Z2B9) Ribosomal protein S6 kinase alpha-4 (EC 2.7.11.1) (Nuclear|
           mitogen-and stress-activated protein kinase 2) (90 kDa
           ribosomal protein S6 kinase 4) (RSK-like protein kinase)
           (RLSK)
          Length = 773

 Score = 28.9 bits (63), Expect = 7.8
 Identities = 11/35 (31%), Positives = 19/35 (54%)
 Frame = -1

Query: 433 RPEVQSQPKISDWERTFASTAPGVNPAAGLPAGDP 329
           RP+++S+  + ++   F    P  +PA   P GDP
Sbjct: 319 RPQIRSELDVGNFAEEFTRLEPVYSPAGSPPPGDP 353


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 69,889,551
Number of Sequences: 219361
Number of extensions: 1592957
Number of successful extensions: 6417
Number of sequences better than 10.0: 25
Number of HSP's better than 10.0 without gapping: 5984
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6406
length of database: 80,573,946
effective HSP length: 103
effective length of database: 57,979,763
effective search space used: 3478785780
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)