>SYI_ENTFA (Q836V1) Isoleucyl-tRNA synthetase (EC 6.1.1.5) (Isoleucine--tRNA|
           ligase) (IleRS)
          Length = 926

 Score = 31.6 bits (70), Expect = 0.47
 Identities = 21/61 (34%), Positives = 27/61 (44%), Gaps = 1/61 (1%)
 Frame = +2

Query: 11  WSFIYSMEKLLQLATQCNKPSRHALKQQESIFKTWM-HLDLQEKN*FRDEVLKTRRHAAH 187
           WSF+   E+ +QLA     P       +E +  TW   +D      FRD VLK    A H
Sbjct: 767 WSFLQEEEEYVQLA---EFPGYETFTNEEELMDTWAAFMD------FRDNVLKALEEARH 817

Query: 188 S 190
           S
Sbjct: 818 S 818

>VAX2_MOUSE (Q9WTP9) Ventral anterior homeobox 2 (Ventral retina homeodomain|
           protein)
          Length = 292

 Score = 30.4 bits (67), Expect = 1.1
 Identities = 18/44 (40%), Positives = 24/44 (54%), Gaps = 5/44 (11%)
 Frame = +1

Query: 286 ALMIHVPGFPGLAETHR-----NPVHSLPRLASTGIASAAWPKP 402
           +L+   PG PGL  +HR     +P +S PRL     ASA+ P P
Sbjct: 199 SLLALTPGLPGLPASHRGTSLVDPRNSSPRLNPMPSASASSPLP 242

>Z585B_PONPY (Q5RB30) Zinc finger protein 585B|
          Length = 769

 Score = 30.4 bits (67), Expect = 1.1
 Identities = 11/22 (50%), Positives = 16/22 (72%)
 Frame = +2

Query: 113 WMHLDLQEKN*FRDEVLKTRRH 178
           W HLDL ++N +RD +L+T  H
Sbjct: 41  WQHLDLSQRNLYRDVMLETYSH 62

>ARPA_ECOLI (P23325) Ankyrin-repeat protein A (Ankyrin-like regulatory protein)|
          Length = 728

 Score = 30.4 bits (67), Expect = 1.1
 Identities = 19/51 (37%), Positives = 29/51 (56%)
 Frame = -3

Query: 338 FLCVSAKPGNPGTWIISAFIWPRLAAALESDQQRVFKPLTAEYLGLTHANY 186
           FL +S K  N  T I++A   P+LAA    D ++V+K L+A+    +H  Y
Sbjct: 435 FLAISRKDKNVVTSILNAL--PKLAATHHLDNEQVYKFLSAKNRTSSHVLY 483

>CAC1A_RABIT (P27884) Voltage-dependent P/Q-type calcium channel alpha-1A subunit|
            (Voltage-gated calcium channel alpha subunit Cav2.1)
            (Calcium channel, L type, alpha-1 polypeptide isoform 4)
            (Brain calcium channel I) (BI)
          Length = 2424

 Score = 30.4 bits (67), Expect = 1.1
 Identities = 29/86 (33%), Positives = 36/86 (41%), Gaps = 17/86 (19%)
 Frame = -2

Query: 402  RLRPRRAGDAGGRQPRQAV------------HGVSVRLRQAGKPRNVDHQRLHMA----- 274
            R RPRR    GGR  R+A              G SV L +A +P     QRL        
Sbjct: 2290 RRRPRRRRGGGGRALRRAPGPREPLAQDSPGRGPSVCLARAARPAGP--QRLLPGPRTGQ 2347

Query: 273  SPRGRARVRPAACLQASHRGVPWSYP 196
            +PR R   +PA  +Q   RG+  S P
Sbjct: 2348 APRARLPQKPARSVQRERRGLVLSPP 2373

>Z585B_HUMAN (Q52M93) Zinc finger protein 585B (zinc finger protein 41-like|
           protein)
          Length = 769

 Score = 30.0 bits (66), Expect = 1.4
 Identities = 11/22 (50%), Positives = 16/22 (72%)
 Frame = +2

Query: 113 WMHLDLQEKN*FRDEVLKTRRH 178
           W HLDL ++N +RD +L+T  H
Sbjct: 41  WRHLDLSQRNLYRDVMLETYSH 62

>EURL_MOUSE (Q9D7G4) Protein EURL homolog|
          Length = 290

 Score = 29.6 bits (65), Expect = 1.8
 Identities = 12/28 (42%), Positives = 17/28 (60%)
 Frame = +2

Query: 2   KANWSFIYSMEKLLQLATQCNKPSRHAL 85
           K NW   Y+  K L L ++C+K S+H L
Sbjct: 93  KINWIVQYAQNKNLDLESECSKTSQHPL 120

>GCST_XYLFT (Q87EZ6) Aminomethyltransferase (EC 2.1.2.10) (Glycine cleavage|
           system T protein)
          Length = 368

 Score = 29.3 bits (64), Expect = 2.3
 Identities = 25/77 (32%), Positives = 37/77 (48%)
 Frame = +1

Query: 154 RGLENTASRSA*FAWVRPRYSAVRGLKTRCWSDSSAAARRGHMKALMIHVPGFPGLAETH 333
           R + N A+R    AW+  + SA   ++    +D +  A +G   A    V     LAETH
Sbjct: 110 RFIVNAATREKDLAWINTQASAFN-VRVEERADLAMLAVQG--PAARAQVTNL--LAETH 164

Query: 334 RNPVHSLPRLASTGIAS 384
           R+ V  L R A+  +AS
Sbjct: 165 RDAVEKLGRFAALEVAS 181

>GCST_XYLFA (Q9PGW5) Aminomethyltransferase (EC 2.1.2.10) (Glycine cleavage|
           system T protein)
          Length = 368

 Score = 29.3 bits (64), Expect = 2.3
 Identities = 25/77 (32%), Positives = 37/77 (48%)
 Frame = +1

Query: 154 RGLENTASRSA*FAWVRPRYSAVRGLKTRCWSDSSAAARRGHMKALMIHVPGFPGLAETH 333
           R + N A+R    AW+  + SA   ++    +D +  A +G   A    V     LAETH
Sbjct: 110 RFIVNAATREKDLAWINTQASAFN-VRVEERADLAMLAVQG--PAARAQVTNL--LAETH 164

Query: 334 RNPVHSLPRLASTGIAS 384
           R+ V  L R A+  +AS
Sbjct: 165 RDAVEKLGRFAALEVAS 181

>SYL_PORGI (Q7MW49) Leucyl-tRNA synthetase (EC 6.1.1.4) (Leucine--tRNA ligase)|
           (LeuRS)
          Length = 925

 Score = 29.3 bits (64), Expect = 2.3
 Identities = 12/21 (57%), Positives = 15/21 (71%)
 Frame = -3

Query: 215 EYLGLTHANYALRDAVFSRPR 153
           ++LG    NY LRDA+FSR R
Sbjct: 465 KHLGCVKVNYRLRDAIFSRQR 485

>VAX2_HUMAN (Q9UIW0) Ventral anterior homeobox 2|
          Length = 290

 Score = 28.5 bits (62), Expect = 4.0
 Identities = 17/44 (38%), Positives = 23/44 (52%), Gaps = 5/44 (11%)
 Frame = +1

Query: 286 ALMIHVPGFPGLAETHR-----NPVHSLPRLASTGIASAAWPKP 402
           +L+   P  PGL  +HR     +P +S PRL     ASA+ P P
Sbjct: 199 SLLALTPSLPGLPASHRGTSLGDPRNSSPRLNPLSSASASPPLP 242

>GPA6_CAEEL (Q93743) Guanine nucleotide-binding protein alpha-6 subunit|
          Length = 364

 Score = 28.5 bits (62), Expect = 4.0
 Identities = 18/38 (47%), Positives = 22/38 (57%)
 Frame = +2

Query: 17  FIYSMEKLLQLATQCNKPSRHALKQQESIFKTWMHLDL 130
           FI SM    QL  + NK +R  +KQ   IFKT +H DL
Sbjct: 234 FIVSMSDYDQLDPEDNKYNR--MKQSYEIFKTIVHSDL 269

>SALM_DROVI (P39806) Homeotic protein spalt-major|
          Length = 1402

 Score = 28.5 bits (62), Expect = 4.0
 Identities = 13/33 (39%), Positives = 18/33 (54%)
 Frame = +1

Query: 304 PGFPGLAETHRNPVHSLPRLASTGIASAAWPKP 402
           P FPGL   +R P+  L  L +T  ++A  P P
Sbjct: 548 PAFPGLPGIYRPPMELLKSLGATAGSTAGLPHP 580

>MGR5_RAT (P31424) Metabotropic glutamate receptor 5 precursor (mGluR5)|
          Length = 1203

 Score = 28.5 bits (62), Expect = 4.0
 Identities = 13/32 (40%), Positives = 20/32 (62%)
 Frame = -3

Query: 365  ANLGRLCTGFLCVSAKPGNPGTWIISAFIWPR 270
            AN+  L +  L  +A PG PGT I S+++ P+
Sbjct: 1066 ANISELNSMMLSTAATPGPPGTPICSSYLIPK 1097

>BPA1_HUMAN (Q03001) Bullous pemphigoid antigen 1 isoforms 1/2/3/4/5/8 (230 kDa|
           bullous pemphigoid antigen) (BPA) (Hemidesmosomal plaque
           protein) (Dystonia musculorum protein) (Dystonin)
           (Fragment)
          Length = 3214

 Score = 28.5 bits (62), Expect = 4.0
 Identities = 13/23 (56%), Positives = 17/23 (73%)
 Frame = +1

Query: 307 GFPGLAETHRNPVHSLPRLASTG 375
           GFP LAET ++P+  LP +AS G
Sbjct: 11  GFPRLAETLQHPMCPLPLVASAG 33

>DAX1_PIG (P79386) Nuclear receptor 0B1 (Nuclear receptor DAX-1)|
          Length = 471

 Score = 28.1 bits (61), Expect = 5.2
 Identities = 10/35 (28%), Positives = 18/35 (51%)
 Frame = +1

Query: 217 AVRGLKTRCWSDSSAAARRGHMKALMIHVPGFPGL 321
           A++G   +CWS   +     ++K  ++  P  PGL
Sbjct: 361 AIKGFLAKCWSLDISTKEYAYLKGTVLFNPDLPGL 395

>MAFB_HUMAN (Q9Y5Q3) Transcription factor MafB (V-maf musculoaponeurotic|
           fibrosarcoma oncogene homolog B)
          Length = 323

 Score = 28.1 bits (61), Expect = 5.2
 Identities = 16/49 (32%), Positives = 19/49 (38%)
 Frame = -2

Query: 360 PRQAVHGVSVRLRQAGKPRNVDHQRLHMASPRGRARVRPAACLQASHRG 214
           P  A  G  V   + G   +  H   H ASP   +   PA  L  SH G
Sbjct: 141 PHHAYPGAGVAHDELGPHAHPHHHHHHQASPPPSSAASPAQQLPTSHPG 189

>SYL_BACFR (Q64MG4) Leucyl-tRNA synthetase (EC 6.1.1.4) (Leucine--tRNA ligase)|
           (LeuRS)
          Length = 943

 Score = 28.1 bits (61), Expect = 5.2
 Identities = 19/63 (30%), Positives = 29/63 (46%)
 Frame = -3

Query: 341 GFLCVSAKPGNPGTWIISAFIWPRLAAALESDQQRVFKPLTAEYLGLTHANYALRDAVFS 162
           G +  S +PG P   ++   +  + A A   +       + A  LG    N+ LRDA+FS
Sbjct: 431 GIMMNSPRPGAPEGGLVLNGLTVKEAIAKTKEY------IKATGLGRVKVNFRLRDAIFS 484

Query: 161 RPR 153
           R R
Sbjct: 485 RQR 487

>HAS1_ASPFU (Q4WQM4) ATP-dependent RNA helicase has1 (EC 3.6.1.-)|
          Length = 622

 Score = 27.7 bits (60), Expect = 6.8
 Identities = 14/41 (34%), Positives = 22/41 (53%), Gaps = 8/41 (19%)
 Frame = +3

Query: 279 YEGADDPRSWVSRLGGDAQKPRA--------QPAEVGVHRH 377
           ++  DDPR ++ R+G  A+   A        QP+EVG  +H
Sbjct: 462 FDPPDDPRDYIHRVGRTARGTNAKGRSLMFLQPSEVGFLKH 502

>SYL_BACTN (Q8A329) Leucyl-tRNA synthetase (EC 6.1.1.4) (Leucine--tRNA ligase)|
           (LeuRS)
          Length = 944

 Score = 27.7 bits (60), Expect = 6.8
 Identities = 12/19 (63%), Positives = 13/19 (68%)
 Frame = -3

Query: 209 LGLTHANYALRDAVFSRPR 153
           LG    NY LRDA+FSR R
Sbjct: 470 LGRVKVNYRLRDAIFSRQR 488

>GAG_MLVFF (P26806) Gag polyprotein (Core polyprotein) [Contains: Matrix|
           protein p15; RNA-binding phosphoprotein p12; Capsid
           protein p30; Nucleocapsid protein p10]
          Length = 537

 Score = 27.7 bits (60), Expect = 6.8
 Identities = 14/27 (51%), Positives = 15/27 (55%)
 Frame = +3

Query: 267 EARPYEGADDPRSWVSRLGGDAQKPRA 347
           E  P EGA DP   VSRL G  + P A
Sbjct: 180 EVAPTEGAPDPSPMVSRLRGRKEPPVA 206

>Z585A_PONPY (Q5RDX1) Zinc finger protein 585A|
          Length = 737

 Score = 27.3 bits (59), Expect = 8.9
 Identities = 10/22 (45%), Positives = 15/22 (68%)
 Frame = +2

Query: 113 WMHLDLQEKN*FRDEVLKTRRH 178
           W HLD  ++N +RD +L+T  H
Sbjct: 9   WRHLDPSQRNLYRDVMLETYSH 30

>Z585A_HUMAN (Q6P3V2) Zinc finger protein 585A|
          Length = 769

 Score = 27.3 bits (59), Expect = 8.9
 Identities = 10/22 (45%), Positives = 15/22 (68%)
 Frame = +2

Query: 113 WMHLDLQEKN*FRDEVLKTRRH 178
           W HLD  ++N +RD +L+T  H
Sbjct: 41  WRHLDPSQRNLYRDVMLETYSH 62


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 59,393,693
Number of Sequences: 219361
Number of extensions: 1187535
Number of successful extensions: 3436
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 3331
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3433
length of database: 80,573,946
effective HSP length: 109
effective length of database: 56,663,597
effective search space used: 1359926328
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)